scly (scly,LOC107552249,LOC107552250,LOC107752645)


Basic Information

Item Value
gene id scly
gene name scly,LOC107552249,LOC107552250,LOC107752645
gene type misc
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056704.1
NCBI id CM032073.1
chromosome length 27473687
location 12154268 ~ 12159899 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>TU66023
AGTAGTAAAGCGTGCCGGTGCTGTCTGCCGCATCATCAGTTTGAACTGTGAATTATTGACAAGATATACGCTAAAGAGCAGAAGAGAGTGTGATCTAGATAATGGCTGAAAAGACCCCTGTCATCCTGGGTCATAATCTATGGGGAACCGAAACACATCATTGTGGGTCTGAcctgcatcatcatcatcatcatcatcatcatcatcatgtgtCTGATGGGCCAGAGAGAATATATATGGATTACAACGCCACCACGCCAGTGGATCCAGAGGTGGTCAGCGTTATTACTGATGCTTT
>TU66030
CTTGGAGGAGATAAGATTCATTTTAACAGCCATTTTCCTGGTTCAGACATTTTGCCCAACACGTGTAACATATCCATTTTGGGAAGGGGACTTCAGGGGCGTAGAGTGCTGTCCACCTGTAGGAGGTTGTTGGCCAGTGTGGGTGCTGCCTGCCACTCAGACAGAGAAGATCAACCTTCCCATATTCTTCTGAGCTGTGGGATTCCATATCATGTGGCTACCAACGCTTTGAGGATCAGTGTGGGTAGAAGTACCTCCCATGAAGATGTGGACATTGTCGTGGAGGATCTGAGAGACACTGTAGAGCAACTGGAGCGAATGAACTAGCACCAGGGATATTTTACctgcctctgtgtgtgtatatgtatataaccaaaaaagttttagttttgcaCATAAATTCTGAAATAAGTGTGGAGTTCAGATTTCAGGGTCATCGTCAGGTTGCACTATATCGATCTAAGAGCTCTTTATTTAgcagaatataatatttaatgtgactCTTATCAGGTGGTGTGTCATGAGACTAGAGTTCAGGATTCAGACATTGTCAGGttgctctatatatatatatttaatcagaaTATAATGTTCAACGTGCATATTACTTGGtaaaacataatatatggaACTTCAGGGAATTTAGCTCATAAatagtaaaagaaaatacataaagCAGCTTGCAAACGGAGGTGTGCAATGTGTAAAGTCCACAAAGTCCAATTACAGACTGACTTATAGAGTGTGTCACTTTGCAAAAAGTGATCGAattgtttatttctgtcattgGGAAACTAACCAACCACtgcacaaaatatgaaaatcagcTCCCCATAACAGAACAAATTAcactgcaaaatataatttttggtaTGTATTGCACACTCGTATTTGCATATGAGTGTTGGCTTTGGTCATTTCaggtcagtttttatttttaacatagttAAAATTGCCTCAGTTATTTGGTTTTGATACTCATTAATTTATCCCTTCTGATTTTATATTGAATGCACTGTTGtatgttgtattttaaaaactgtttcatAATTGAATATTGAATTGTTCTTATTATGTTGTAGATGtccataacatttttttcatggaATCAACAGAGACCTGTTCGTTTGAACTTGCCGGCTGCACTTGCGATGGAGCGTGCGCTCTGAGAATGAGACGGAGATATCCGTTACCTGTACAACAAAGACGCactagcattattaaatgagCTAAATGGACTCTCTTTAAACATCTAAGCGCTGATCTGATCTCCCCTGATGCTGAATCATTAAAGTTCATATGCT
>XM_043241013.1
CTGTCCGACCGTCTAAGAGGAGGAGGGGTTTAGTCATGTACACTTCCGGTTCAAAGTAGTAAAGCGTGCCGGTGCTGTCTGCCGCATCATCAGTTTGAACTGTGAATTATTGACAAGATATACGCTAAAGAGCAGAAGAGAGTGTGATCTAGATAATGGCTGAAAAGACCCCTGTCATCCTGGGTCATAATCTATGGGGAACCGAAACACATCATTGTGGGTCTGAcctgcatcatcatcatcatcatcatcatcatcatcatgtgtCTGATGGGCCAGAGAGAATATATATGGATTACAACGCCACCACGCCAGTGGATCCAGAGGTGGTCAGCGTTATTACTGATGCTTTAACTGTGGCGTGAAATCCCAGCAGTAATTACCTACCAGGTCTAAAAGCTAGAGACATTATTTACCATTCCAGAGACACTATTGCCAGGATGGTTGGTGGAAAAGCAGCAgacattatttttacttcagGAGGAACTGAGGCCAATAATCTGGTGTTTCACACAGCTGTGGAGCACTTCAGGCTGAGCAAGGCTTCTGCAGAGGGAGACGTGAACAGTGAGCAGCTAAATGGAAGAGGCTCCCCGCCTCATATTATCATCTCCAATGTCGAGCATGACTCCATCCAACTCGCAgctaaacatttgttaaaagaGGGTAAAGCAGATGTCACATTTGTGCCAGTGTCCAAGGTGACGGCACGGGTGGAGGTCGAGGATGTCATTGCAGCGATTCGTCCCACCACCTGCCTGGTGTCGGTCATGCTGGCCAATAATGAAACAGGCATTATTATGCCAATTAAAGATATTTGTCAGAGGGTGAGGGAAGTGAACAAACAGAGGGCAGCATCAGCTCCCAGAATCCTCCTTCACACGGATGCTGCACAGGCCATCGGAAAGATAAGAGTGGATGCACATGAGCTGGGAGTAGACTATATTACCATTGTAGGGCACAAGTTTTATGGCCCTCGAATTGGCGCTTTGTTTGTGAATGATCCTGGACCCACGACTCCGGTTTACCCTCTGTTTTTTGGAGGAGGACAAGAGCGCAACTTCAGGCCAGGAACTGAGAACACAGCAATGATAGCCGGTCTGGGAAAGgCTGCAGAATTGGTCAACTTAAATCTAGTGGAGTATGAAGCCCATTTCCTGGACATACGATTCTATCTAGAGCAGAAGCTGCTTGTAAgctGTCTTGGAGGAGATAAGATTCATTTTAACAGCCATTTTCCTGGTTCAGACATTTTGCCCAACACGTGTAACATATCCATTTTGGGAAGGGGACTTCAGGGGCGTAGAGTGCTGTCCACCTGTAGGAGGTTGTTGGCCAGTGTGGGTGCTGCCTGCCACTCAGACAGAGAAGATCAACCTTCCCATATTCTTCTGAGCTGTGGGATTCCATATCATGTGGCTACCAACGCTTTGAGGATCAGTGTGGGTAGAAGTACCTCCCATGAAGATGTGGACATTGTCGTGGAGGATCTGAGAGACACTGTAGAGCAACTGGAGCGAATGAACTAGCACCAGGGATATTTTACctgcctctgtgtgtgtatatgtatataaccaaaaaagttttagttttgcaCATAAATTCTGAAATAAGTGTGGAGTTCAGATTTCAGGGTCATCGTCAGGTTGCACTATATCGATCTAAGAGCTCTTTATTTAgcagaatataatatttaatgtgactCTTATCAGGTGGTGTGTCATGAGACTAGAGTTCAGGATTCAGACATTGTCAGGttgctctatatatatatatttaatcagaaTATAATGTTCAACGTGCATATTACTTGGtaaaacataatatatggaACTTCAGGGAATTTAGCTCATAAatagtaaaagaaaatacataaagCAGCTTGCAAACGGAGGTGTGCAATGTGTAAAGTCCACAAAGTCCAATTACAGACTGACTTATAGAGTGTGTCACTTTGCAAAAAGTGATCGAattgtttatttctgtcattgGGAAACTAACCAACCACtgcacaaaatatgaaaatcagcTCCCCATAACAGAACAAATTAcactgcaaaatataatttttggtaTGTATTGCACACTCGTATTTGCATATGAGTGTTGGCTTTGGTCATTTCaggtcagtttttatttttaacatagttAAAATTGCCTCAGTTATTTGGTTTTGATACTCATTAATTTATCCCTTCTGATTTTATATTGAATGCACTGTTGtatgttgtattttaaaaactgtttcatAATTGAATATTGAATTGTTCTTATTATGTTGTAGATGtccataacatttttttcatggaATCAACAGAGACCTGTTCGTTTGAACTTGCCGGCTGCACTTGCGATGGAGCGTGCGCTCTGAGAATGAGACGGAGATATCCGTTACCTGTACAACAAAGACGCactagcattattaaatgagCTAAATGGACTCTCTTTAAACATCTAAGCGCTGATCTGATCTCCCCTGATGCTGAATCATTAAAGTTCATATGCTCTGA

Function

symbol description
scly Predicted to enable catalytic activity. Orthologous to human SCLY (selenocysteine lyase).

NR:

description
selenocysteine lyase

GO:

id name namespace
GO:0008152 metabolic process biological_process
GO:0030170 pyridoxal phosphate binding molecular_function
GO:0003824 catalytic activity molecular_function

KEGG:

id description
K01763 SCLY; selenocysteine lyase

RNA

RNA id representative length rna type GC content exon number start site end site
TU66023 False 298 lncRNA 0.45 3 12154322 12155432
TU66030 False 1304 lncRNA 0.38 3 12158062 12159895
XM_043241013.1 True 2510 mRNA 0.43 14 12154268 12159899

Neighbor

gene id symbol gene type direction distance location
kif1aa kif1aa,kif1a,LOC107696745,LOC107694128,LOC107552277,LOC108427666,LOC107593169 coding upstream 1304 12097680 ~ 12152964 (+)
atg4b atg4b,LOC107696761,LOC107552278,LOC107593167,LOC107694120 coding upstream 72240 12075450 ~ 12082028 (+)
boka boka,bok,LOC107733256,LOC107752647,LOC107696759,LOC107694130 coding upstream 79704 12065298 ~ 12074564 (+)
farp2 farp2,LOC107694112,LOC107696757 coding upstream 99258 12011095 ~ 12055010 (+)
trnai-aau_2 NA coding upstream 181224 11972971 ~ 11973044 (+)
LOC122346457 scly,LOC107552249,LOC107552250,LOC107752645 coding downstream 279201 12439100 ~ 12444241 (+)
LOC122346426 klhl30,LOC107753621,LOC107694118,LOC107696751,LOC107752665,LOC107593185 coding downstream 304643 12464542 ~ 12469417 (+)
LOC122347050 tmem131,LOC107659030,LOC107692350 coding downstream 544746 12704645 ~ 12731083 (+)
LOC122346842 LOC107752644,LOC107696763,LOC107593183,LOC107552264,LOC107753650,LOC107694115 coding downstream 580920 12740819 ~ 12760408 (+)
LOC122346411 klhl30,LOC107753621,LOC107694118,LOC107696751,LOC107752665,LOC107593185 coding downstream 600961 12760860 ~ 12765699 (+)
G44575 hdlbp,LOC107733253,LOC107694132,LOC107552253,LOC107696756,LOC107752661 non-coding upstream 160131 11993558 ~ 11994137 (+)
G44574 hdlbpa,hdlbp,LOC107752661,LOC107694132,LOC107733253,LOC107696756 non-coding upstream 176857 11937101 ~ 11977411 (+)
LOC122347449 NA non-coding upstream 448342 11689692 ~ 11705926 (+)
G44521 NA non-coding upstream 510570 11641081 ~ 11643698 (+)
G44483 NA non-coding upstream 725438 11427845 ~ 11428830 (+)
G44604 NA non-coding downstream 317225 12477124 ~ 12482182 (+)
G44606 LOC107593190,LOC107696746,LOC107552261,LOC107753661,LOC107694109,LOC107752664 non-coding downstream 333054 12492953 ~ 12493642 (+)
G44611 NA non-coding downstream 404193 12564092 ~ 12671665 (+)
G44622 NA non-coding downstream 504921 12664820 ~ 12699577 (+)
G44615 NA non-coding downstream 923481 13083380 ~ 13084230 (+)
G44588 NA other upstream 61813 12087399 ~ 12092455 (+)
LOC122346564 LOC107733248,LOC107694106,LOC107576895 other upstream 143729 12002147 ~ 12010539 (+)
G44478 LOC107749977,LOC107730703,LOC107675437,LOC107564626,LOC107698886,LOC107555394 other upstream 733938 11415273 ~ 11420330 (+)
pik3r6a zgc:158654,LOC107733898,LOC107555378,LOC107704002,LOC107757422,LOC105903457 other upstream 1261808 10882960 ~ 10892460 (+)
LOC122347096 LOC107704003,LOC107733914,LOC107555377,LOC107569363,LOC107660471,LOC107757423 other upstream 1271369 10870378 ~ 10882899 (+)
LOC122347491 LOC107593172,LOC107593170,LOC107694117,LOC107753639,LOC107552274 other downstream 361874 12521773 ~ 12526957 (+)
crocc2 crocc2,LOC107593190,LOC107753661,LOC107694109,LOC107752664,LOC107552261,LOC107696746 other downstream 605922 12765821 ~ 12805700 (+)
smx5 lsm2,LSM2,smx5 other downstream 920666 13080565 ~ 13082119 (+)
G44645 NA other downstream 948836 13108735 ~ 13109366 (+)
G44887 NA other downstream 1234330 13394229 ~ 13409912 (+)

Expression


Co-expression Network