LOC122347491 (LOC107593172,LOC107593170,LOC107694117,LOC107753639,LOC107552274)


Basic Information

Item Value
gene id LOC122347491
gene name LOC107593172,LOC107593170,LOC107694117,LOC107753639,LOC107552274
gene type misc
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056704.1
NCBI id CM032073.1
chromosome length 27473687
location 12521773 ~ 12526957 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>TU66058
GCCTTCTCATTGgTGCTTTAAACCTGCCGTCCATCGCTGGGGATGGTGCTGGGAAGTCTGATCATGAAACGTTGGGGTTGTCGTTCAGAGCCATTCCACGCTTCTCTGTTGCTAATGCTCACCATCTCCATCTTCTGCTGTATACCCCTCTTCTTCATGGGCTGCCATACAAGATGTTGCTGGTGTTCTGAGCGTTAATGGGCTTCAGCCGTCCTGTAGTGCCAATTGCTCCTGTCCCAGCAGCGCGTTTAACCCAGTGTGTGGGAAAACAACATTGAATACATCTCGCCCTGCCATGCTGGCTGCACAAACTTCACCTTGGATCCCAACAGCCAATACAGAGTCCAGAGTTACAGTAACTGTCAGTGTATTCCCGGTGTGGCCACAGCCAAGCCTGGCCCTTGTGCCAACAGCTGCCCTCACTATCTCCTGCCTGTGATGCTCCTTATATCTCTGGCTGGATTTATAGCCAGCTTAACACACAACCCCATCTACATGATGGTGCTCAGGTCAGTACCTTCAGAAGAGAAGTCCTTCGCAATCGGCGTACAGTTTCTGCTTCTGAGGGTTCTGACCTGGCTGCCAGCTCTGGCTCTATTTGGGATGACCATAGATTCCACGTGTATCTGGTGGAAAATTGCTTGTGAGAAAAGCAAGGATGTGGTTACTATGACAACAACCTCCTTAGAAACAGGTATCTAGGACTGCAGGTGGGCTTTAAGACGGTAGGCATTGCGCTCCTGGCATTTATTGGCTGGAAAATGCAGCGGACCAGAGAGTACAGCTTAGAGAACAAGCCAGAGGGACCCCTGTGATGCCTCGACTCTGCTTAGCCCATCGCAGCTCACTTTTGAGAGCCCTCTCAGTGAATTGAGCCCCTGGATATTTCTCGTCAGAAACCCCTCCTCCTTTCAACATCTGGCTGGAAATGCGATGAATTCAGTTTGGACTTTTCTCAAGTTGTGCACTAACTTCTTGGGTATTTATTTCCACCTGCGGAGCAATAACTGGACAGATTCAGGGATTTTCCAACTTCACACAGTTTTTCTGGTATTAATAATTAACTACGTATAGCACTATAAACAGTTTATCATACTTTATAGCCACGGCTCTCGTCAACGGACGGTGGCGTCTTTGGAGAGGTCACAGAACTTGTGACAGAAATGTCTGTATGTTGTCCTTAAGATTTGGTTAATACGCAATTTGatgattcatttcttttctttttttggtgtaTGTGTATTTGAAGACTATGTGAAGGATGCGGGGCGCTCTTTATACCCAAATGCACACAGATACACACGAGTGTGTCGAATATCAAGCTGTGTGTGAGTTGAGGCGTGTGTAGcttcaaataattattgtagCCATGTAGTAGATTTCAAATTATACTTTCAAAtgtgaagacattttgaaaataagcaTCAAAAgtttgtacaatatatttttatacctgataatgctgttttattatacactttgtgcttgtttttaattttttaatttttttttgctcttaaaacaaatgacaacaTGCTTTTATAATTGCTGCTTGGAGTAATGAATCGTGACTTTCTAAGTCTTTA
>XM_043242840.1
gCTAGAAATAATTAACAATGTTTTTCGCTCAATAAGTTTTTTGGTGCCTGAATGTTTGATCTAAGGGCAAAATCATGTAATATCCAGTATCCTTCCACACACAGAGTTACAGTAACTGTCAGTGTATTCCCGGTGTGGCCACAGCCAAGCCTGGCCCTTGTGCCAACAGCTGCCCTCACTATCTCCTGCCTGTGATGCTCCTTATATCTCTGGCTGGATTTATAGCCAGCTTAACACACAACCCCATCTACATGATGGTGCTCAGGTCAGTACCTTCAGAAGAGAAGTCCTTCGCAATCGGCGTACAGTTTCTGCTTCTGAGGGTTCTGACCTGGCTGCCAGCTCTGGCTCTATTTGGGATGACCATAGATTCCACGTGTATCTGGTGGAAAATTGCTTGTGAGAAAAGCAAGGATGTGGTTACTATGACAACAACCTCCTTAGAAACAGGTATCTAGGACTGCAGGTGGGCTTTAAGACGGTAGGCATTGCGCTCCTGGCATTTATTGGCTGGAAAATGCAGCGGACCAGAGAGTACAGCTTAGAGAACAAGCCAGAGGGACCCCTGTGATGCCTCGACTCTGCTTAGCCCATCGCAGCTCACTTTTGAGAGCCCTCTCAGTGAATTGAGCCCCTGGATATTTCTCGTCAGAAACCCCTCCTCCTTTCAACATCTGGCTGGAAATGCGATGAATTCAGTTTGGACTTTTCTCAAGTTGTGCACTAACTTCTTGGGTATTTATTTCCACCTGCGGAGCAATAACTGGACAGATTCAGGGATTTTCCAACTTCACACAGTTTTTCTGGTATTAATAATTAACTACGTATAGCACTATAAACAGTTTATCATACTTTATAGCCACGGCTCTCGTCAACGGACGGTGGCGTCTTTGGAGAGGTCACAGAACTTGTGACAGAAATGTCTGTATGTTGTCCTTAAGATTTGGTTAATACGCAATTTGatgattcatttcttttctttttttggtgtaTGTGTATTTGAAGACTATGTGAAGGATGCGGGGCGCTCTTTATACCCAAATGCACACAGATACACACGAGTGTGTCGAATATCAAGCTGTGTGTGAGTTGAGGCGTGTGTAGcttcaaataattattgtagCCATGTAGTAGATTTCAAATTATACTTTCAAAtgtgaagacattttgaaaataagcaTCAAAAgtttgtacaatatatttttatacctgataatgctgttttattatacactttgtgcttgtttttaattttttaatttttttttgctcttaaaacaaatgacaacaTGCTTTTATAATTGCTGCTTGGAGTAATGAATCGTGACTTTCTAAGTCTTTATTATTCAATATGTAACATATATTTACCAATGTGTaacttatttcaaatataaaatttgttcacaatt

Function

NR:

description
PREDICTED: solute carrier organic anion transporter family member 2A1-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU66058 True 1586 lncRNA 0.44 7 12521773 12526890
XM_043242840.1 False 1409 mRNA 0.40 4 12525040 12526957

Neighbor

gene id symbol gene type direction distance location
LOC122346426 klhl30,LOC107753621,LOC107694118,LOC107696751,LOC107752665,LOC107593185 coding upstream 52356 12464542 ~ 12469417 (+)
LOC122346457 scly,LOC107552249,LOC107552250,LOC107752645 coding upstream 77532 12439100 ~ 12444241 (+)
kif1aa kif1aa,kif1a,LOC107696745,LOC107694128,LOC107552277,LOC108427666,LOC107593169 coding upstream 368809 12097680 ~ 12152964 (+)
atg4b atg4b,LOC107696761,LOC107552278,LOC107593167,LOC107694120 coding upstream 439745 12075450 ~ 12082028 (+)
boka boka,bok,LOC107733256,LOC107752647,LOC107696759,LOC107694130 coding upstream 447209 12065298 ~ 12074564 (+)
LOC122347050 tmem131,LOC107659030,LOC107692350 coding downstream 177688 12704645 ~ 12731083 (+)
LOC122346842 LOC107752644,LOC107696763,LOC107593183,LOC107552264,LOC107753650,LOC107694115 coding downstream 213862 12740819 ~ 12760408 (+)
LOC122346411 klhl30,LOC107753621,LOC107694118,LOC107696751,LOC107752665,LOC107593185 coding downstream 233903 12760860 ~ 12765699 (+)
sned1 sned1,LOC107694110,LOC107753672,LOC107696765,LOC107593186 coding downstream 279543 12806500 ~ 12835911 (+)
ryk ryk,LOC107752642,LOC107696766,LOC107694116,LOC107753628 coding downstream 311272 12838229 ~ 12877785 (+)
G44606 LOC107593190,LOC107696746,LOC107552261,LOC107753661,LOC107694109,LOC107752664 non-coding upstream 28131 12492953 ~ 12493642 (+)
G44604 NA non-coding upstream 39591 12477124 ~ 12482182 (+)
G44568 sox14,LOC107679857,LOC107756185,LOC107713406,LOC107713405,LOC107694108,LOC103365676 non-coding upstream 256986 11779030 ~ 12264787 (+)
G44575 hdlbp,LOC107733253,LOC107694132,LOC107552253,LOC107696756,LOC107752661 non-coding upstream 527636 11993558 ~ 11994137 (+)
G44574 hdlbpa,hdlbp,LOC107752661,LOC107694132,LOC107733253,LOC107696756 non-coding upstream 544362 11937101 ~ 11977411 (+)
G44611 NA non-coding downstream 37135 12564092 ~ 12671665 (+)
G44622 NA non-coding downstream 137863 12664820 ~ 12699577 (+)
G44615 NA non-coding downstream 556423 13083380 ~ 13084230 (+)
G44640 NA non-coding downstream 566899 13093856 ~ 13095910 (+)
LOC122346816 NA non-coding downstream 574322 13101279 ~ 13103566 (+)
scly scly,LOC107552249,LOC107552250,LOC107752645 other upstream 361874 12154268 ~ 12159899 (+)
G44588 NA other upstream 429318 12087399 ~ 12092455 (+)
LOC122346564 LOC107733248,LOC107694106,LOC107576895 other upstream 511234 12002147 ~ 12010539 (+)
G44478 LOC107749977,LOC107730703,LOC107675437,LOC107564626,LOC107698886,LOC107555394 other upstream 1101443 11415273 ~ 11420330 (+)
pik3r6a zgc:158654,LOC107733898,LOC107555378,LOC107704002,LOC107757422,LOC105903457 other upstream 1629313 10882960 ~ 10892460 (+)
crocc2 crocc2,LOC107593190,LOC107753661,LOC107694109,LOC107752664,LOC107552261,LOC107696746 other downstream 238864 12765821 ~ 12805700 (+)
smx5 lsm2,LSM2,smx5 other downstream 553608 13080565 ~ 13082119 (+)
G44645 NA other downstream 581778 13108735 ~ 13109366 (+)
G44887 NA other downstream 867272 13394229 ~ 13409912 (+)
meltf mfi2,LOC107692364,LOC107709202,LOC107659038,LOC107591189,LOC107739178,LOC107590629 other downstream 1445216 13972173 ~ 13980286 (+)

Expression


Co-expression Network