crocc2 (crocc2,LOC107593190,LOC107753661,LOC107694109,LOC107752664,LOC107552261,LOC107696746)


Basic Information

Item Value
gene id crocc2
gene name crocc2,LOC107593190,LOC107753661,LOC107694109,LOC107752664,LOC107552261,LOC107696746
gene type misc
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056704.1
NCBI id CM032073.1
chromosome length 27473687
location 12765821 ~ 12805700 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>TU66085
CCTGTGTCGTGATTGCTACTTTCCCACTTGTGGCTATATTCTAGCACGAACTGTTTTGCGTTAACGTGCTTATGTGCGTTATTTAAGCGTTGATATTTATTGGAGAGTGCGCTGTGCGCGCTTTGTCAACAGTGCAAAACTTTTAAAGCCTGTGAGACTTTATTAGCGTGCGTATCACCCCGTTAAACTCTGTCGAAGCgtttaaaacactttaagaaTTGAGGACAATTGGAAAAACGTCGCTGTCCGTTTAAGTGTGTTGGCTCGCTACCAGTTTCCAGATGAGTTGTGAAGGGGATCAAGGACTGGAAGCCGTGATTCAGAAGCTGGAGGAGACACTGCTTAACCCAGATAGCGGTGGAGAGGAGAAGACTTACACTCTGAGGGGAGATGAAGAGGAGTCCAACGTCACGCCCGTTCCCGCTCGCATCCGTGAGATCATCACCAGAAACCTGGCTGATACGCCCACAGGCGAGAGCAGCGAGGTGGAGGAGAACCGGCTGCCGAAGGATCTGCCTTCTCAGATGTGCGCAGACAGAGACCAGCTGCTTAGCAGGCAGGCTGCTCTCACTAGCCGGCTGGAGCAGATGCTGTTGCAGCAGTCAGGAGATTCAGACCAGCAGAGTCTGTTTGGCGCAGAGCAGGGTTGGCTAAGAGAGGAAGGACGATCTTATAGGC
>TU66087
GACAGCACTGCGGAGCAGCTTGGACAGGATGGAAATAAATCGGTCCGAAGACCGAACTGAGAGGGATGCCTTACGTAGTGAGATCAGCAGTCTGCAACAGTTACTGCACAACATTAATCAGGTGGTTAGTGGTGAAAGTTCCTCAGACTTATCAAAAGATCAGCACCCATCTGCAGGATCTATTTCCTCTTCTCAACGAGACAGTATTCCAGTATCTGTGCAAAAAGCCCTCTTACAGCGGCAGGCACAAATTCA
>XM_043241197.1
atgctacttttgttttcctgtatgaatgtaaaatttgaatttgaattgaaatataTCTTATACTAATGTTGTTGGCAACCATGGAATTTTTCGTTTGACtgaatttatgttgtttttactcagaaaaaaaattgtattaggAAGTTACAAAATCGTGTCGTTGTAAACCCTTGTTAGTTTTCAGTAATTGCAATGGATATTTAACAAAGTGCCAACAAAGACCGGAATAAACAGTGTTGTATTTGTGCAGCCGTGACCTGCAGCGTCTGTAACTATGGAAGCCAGAAAGCTTGCGTTTTAATTCTCATGACAACAAGCCAGAGCGTCCGGTTTCCCTGTCAACCAGAGGCACCCACCTCGCGCCTGTGTCGTGATTGCTACTTTCCCACTTGTGGCTATATTCTAGCACGAACTGTTTTGCGTTAACGTGCTTATGTGCGTTATTTAAGCGTTGATATTTATTGGAGAGTGCGCTGTGCGCGCTTTGTCAACAGTGCAAAACTTTTAAAGCCTGTGAGACTTTATTAGCGTGCGTATCACCCCGTTAAACTCTGTCGAAGCgtttaaaacactttaagaaTTGAGGACAATTGGAAAAACGTCGCTGTCCGTTTAAGTGTGTTGGCTCGCTACCAGTTTCCAGATGAGTTGTGAAGGGGATCAAGGACTGGAAGCCGTGATTCAGAAGCTGGAGGAGACACTGCTTAACCCAGATAGCGGTGGAGAGGAGAAGACTTACACTCTGAGGGGAGATGAAGAGGAGTCCAACGTCACGCCCGTTCCCGCTCGCATCCGTGAGATCATCACCAGAAACCTGGCTGATACGCCCACAGGCGAGAGCAGCGAGGTGGAGGAGAACCGGCTGCCGAAGGATCTGCCTTCTCAGATGTGCGCAGACAGAGACCAGCTGCTTAGCAGGCAGGCTGCTCTCACTAGCCGGCTGGAGCAGATGCTGTTGCAGCAGTCAGGAGATTCAGACCAGCAGAGTCTGTTTGGCGCAGAGCAGGGTTGGCTAAGAGAGGAAGGACGATCTTATAGGCTGAAGCTCCAGGCCTTTCAGGAGAGCCAACACAGACAGGCTCAGCTGGTGCAGAAACTACAGGCAAAGTTGCTCCAATATAAGAGGAGATGTGGAAATCTAGAGCAGCAGGTGCTGGAGAAAACCTCAGAGTCAGAGAAACTGAGGCTCTCTCTCCAGTCTCACCTAGACTCTTCAGCACACCGTCTCCAGCGTTTTGAGCAGGAACACAATATGGATGTCCAAAGTAAACTCGCTCTGTTGGAGGATGAGCAGAAACGGTGTTCTGGTTTGAGCCAGGTCAATGCACTGCTCCGGGAACAACTCGAACAAGCCAACGAAGCCAATCAGGCCCTGACGGAAAGCCTGCAGAAGGCACGAGAGGAGGCAGAGCAGAGGGACACGCGACTCAGGAGGGAACTTGAGATGAATACCTCCCGAAACGGCCGCGAGCAAGCCCGTGTGCGATCTCTGTGGCGCCAGGCGGCCTTCCTGAGAAGCTCTTTTACCCAGCTGCGGGCCTTCGCTGACAGGAGTCTGTCGGACATGCGAGCCGAGTGCGCGGTGGCTGGCCATCGTCTTCAAACAGCCTGTGTGAATTTGGAGGCTAGCATGAGCCAGCCTTGTACCCCTGCTATCAGTGGAGTATCTGCATTGGAGAATCAACTAAGAGGCAAACTAAAAGATGCTATGCAGCTGCAAGCCCGCTTTGACGCAGAGAAAGTAGAGCTTAACTCTAGGATCCTGGAATTGGGTGAAATGGTAAAGCAGCTGAGAGCACAGAACATTGAGAAGGAAAGCAATCTGACAGCACTGCGGAGCAGCTTGGACAGGATGGAAATAAATCGGTCCGAAGACCGAACTGAGAGGGATGCCTTACGTAGTGAGATCAGCAGTCTGCAACAGTTACTGCACAACATTAATCAGGTGGTTAGTGGTGAAAGTTCCTCAGACTTATCAAAAGATCAGCACCCATCTGCAGGATCTATTTCCTCTTCTCAACGAGACAGTATTCCAGTATCTGTGCAAAAAGCCCTCTTACAGCGGCAGGCACAAATTCAGGAGCTGCAGGGACGTCTGGATGCTTCCCAAGAGCAGGTTGCCACCTTGCGAGATCAGCTGCGTATGGGGGAAGATGAAACCAGAAGCCTGGAACAAAGAATCCGGGAACTGCAGCAAGAAAATCAACTTCTGGAGAGATCTGAGGAGGACAGCACTAGAGATGCCCTAAGATACCGCACCTCACTGGGCATAGTAAACAGTGAAAAAGGAGAGCTTGAGAGGCAGCTCTCAGGCCTGCAGCAGCAGCTGGaatgcacacaaacagagcAGGAAGCTTTGAGAAGCTCTTCTCTGGATGTTCAGAGGCAGAGAGACCTCCTCAGGCAGCAGAGGGAGGACCTGAGGCAGCTGGCTCGAGAACGCTCTGAATCCGAGAGGGGaCGACACTCTCTGGAGCAGCTGGAGATGAGACACTCGGATGTGCGCAAAGAGCTGGTCACACTAAAAGAAGCTCTGAGTCAGCTGACTTTACAGAAAGAGGTTTTGGAGGATGAAAAGAGCACTCTTGCACAGGCTCTCTCCAGGGCGGAGGCCCAGAATGCTGAGCAGGAACTGGCGCTCACTAAACTACGAAGTGAAGATGCAGGGCTACAGGACTCCCTGGCCAAGATGGGAGCCCTGAGTGAGGGATTGGCTAAAGATAAGGTCGAATTGAACCGTCTTCTCTTACAGGTCGAAGCTGAAAAGGCTGAGCTCGGCGAACGTAAACGGGAAGCAGAGCTAGAGCGAGCGGCAGCCAGAGAGGAGCTAGCCAGACTTCAGCAGGAGCTGTTAGACCTAACGGCAGAGAAACGTGCTCTGGAGGCCTCACATATTCACCTTCAAGAGAGTCAAGTGACCCAGGAAGCAGAGTGCAACCTCCTACAGAAGGAGAAAAGTTCAGCCCTGGAGCAACACGCCCAGGTCAGTAAGCAGAAGCAAACCCTGCAGGGACAGCTGAACACATGTCATAGAGAAATGGAGCTCAGTGCTGCCTCGCTAAAGAAGACTTGCAAGGAAAGAGATGAACTGGCGAGAGACAAAGCCAATCTCACAGTGCAGCTCACCTCAGAGCAACGTAAATCCAAGGCCCTGGCCCAAGACCTGGCCGCTCTGCGgGCTGAGAGAGAGTCTCTAGAGTCAGGCCTGTTGGACAGGCAGGAACTGGCCTCAATGCTAGAGGATGACCGGGCTAGGCTAGATGGAGAGAATACTAGTCTACAGCAGGCTAACGAGACTTTGACGCgTGAGCTGTCTAATGTTCACAGTGAACTAGAGCAGCAAATGACCCGGGCATTGCAGGAGAAACAGGCTTTAGAGTTGAAGCTTGCTCAGGTCGAGAGAAACGCACAACAAACCCTCATTACAACACAGCAAAGCCATCAGGATCAACTGCATGCGGAGCGAAAGCACAAGGAGCGCATGCGTGTGGAGTTGTGTGCACAGAGGGAGCAGGCAGAGTCGCAGCTGCGGGCTGAGTGCAAGGAGCTGCGCATGCAGAGTCGCAGAGTTCAGCAACAGCTGCAGGAAGAACTTGCCAAGCTGCAGCAGCACTGTACAGAATCCCTGCTGCAGGCCGAAAGCCATaaacagcagGTTCTATCTGAGAAGGAGGTAGAGAAAGCTACTCTTACTGAGCGCATAATTACCCTCGAGCGTGACATAGAGACAGCTGCCCTTGAAAAGGATCGTATGCGTAGAGACTTCCTGAGCAAACAGGAGCAGGACAAGgaCACACTTTTAGGTTTGCAGGTAGAGCTTCAGGACCTACGCTCTCGTTTCGGGGAGTCTCTGAGTTCCCGTGAAGTTTCAGAGCGCAGCTTAAATGACCAGATCAGAGAGCTTTCTATGCAGAAGCAGGAGTCTCAGCAAGAGGTGGAGCGTTTGAGAAGGGAACTGAATGAGGTGGAGGAGAGCAGGGACTCTGGCCGTAAGGAACTAATCGAGGCCCACAGAGAGCTGAGGGAGTGTTTGCAGGACAGGGACGCCCAGCGGCATGAGGGCTTGGAACTGAAGAGAGCTCTAGGAGATGTTGCGAGAGAAAAAGAGGCCATCCATGCTTCCAATCATGAACTCCGAACAGCTGTGAAGAGAGCCGAGTTTGAAAACAACAGtttgaagCGAGTGGGAGAAGAAAAGGATCAGAGGCTGGCAGTGCTGGAAGAATGTAAATCCTCCCTACAGCAGGAGGCGCTGAAGCTGAGAACCAACATGCGTGAACTTGAGAAATCTCGCTTGCAGGCACGCAGGGAACTGCAGGAACTGCGCAGACAGGTGAAGACATTAGAGGGTCAGTGCACTCAACAAGGGCAAGAGTTGAGTGACATGCAGGCCAGACTGACCCAGGAAGAGCATAGAGAGGAGGAAATGAGAAAAGAGACATTTGCTCTCCGACAAAGAGTACTGGAATGTGATGCTGGCAGAGAAGCAGCTCTGAAGGAGGCTGCAGGCTTGCAGCGGCGTGTAGCAGAACTGGAAGAAGTGCAGCGCCAGGAGAAAGAATTGCAACAACAACAGGATGCCAATCTTCAGGAGAGCCAAATGAAGCAGCGTGAGGAGGTTGCTCGCTTGGAGGGGGCACTGCAGGAAGCCCAGGCCCAGCTCAGGGAGTTTGGGCTGAAGGTAAGTCTAGCTGAGGCCCGGGCCCAAGGGCTGGAAGAGCAGCTGGGACAGAATGACGCCATACGGAGAGATCTTGAGCACAGGTTGAATGTTCTCAGTTCAACCCTGAAACGTACACTTGGAAGCGGACGTGGAAGATGTTCACCCGCACCTGGGGAACGCGGGCGGAGTCCCTCACCATGGAGAACTCGATCACCTGTGAAAGGTGAACCCAAGTCAGATGAGCCTGGGGTAAGTGGATTGCTGGTGTGTTCTTTGTCCCCCTCCCACGGAGAAGATGGAGAATTGGATTTGGACTCAGTTCACATGTTGCTACGTAACTTCCAGCAAGAGCTCAgggacacacagagagagcggGATGAGGCCCAATCACAGGTGCATAATCTCAGCAAGCAGGTAGAAAGCCTGCAAGCCAGTCAGGAAAGAGGCAACACACGTGTTCAGATGCTGAAACAATCTCTCAGAGAGCTTGAGGATGGAAAGCGTGAGCTGGCCAAGCATTTAGAGGGGACACAAGCATCACTCGCCTTACGGGATGAGGCGGTTCAGCGTGGGGAGTTACAGAATAGGATTATGAGTGAAGAGTTGGCCAAAATGAAGAACAGCCAACAGATAACTGAGGCAGAAGCCAAAGCACTGAAGGAGAAGCTGGAGCGCTCCCAGGCCACTGAGGAAAGTCTGGAGGCTGAGCGCCGCCGTATGAAGGAGACCTGTGAGACAGCGGAAGCTCGAGCTGCCAGGCTGGAACTCACACGCCGGGGGTTGGAGGGAGAGCTGCAGCGTGCCCAGCTCCGAGCCACAGAGACAGAGTCGGAGGTCAGCTCACTGCAGGACCGCCTCAACAATCTCCGCAGAGAACTGGGAGACAGCGAAGAGCGTGCTGCCCTCCTGAAGGTTGAGGGTGAGAGGCTGGCAACCGCCTTGGCACACACAGAACTGCAGGAAAGCCAGTTAAGGGAGCAACTGCAGTCAATGACTGCATCCTTGACTGAGAGCAATGCTGCTATAGGAGCAGCACAAGAACAGGCCGCACAGCTACAGCGAGCTCTCACAGCCAATGAACATGACCGGAAGATGCTGCAGGAAAGGTTGGATAAGACACGAGAGGCTCTAACAAACAGTAGGAAGCAAAATCAAGGCTTGAGTGAGAAACTACAGATCCTGCAGAGAAGCCAGGAAGAGTCTGAACTCAGGGTCTCTGAACTGGACAAACAGACACGAGGCCTGCAGGAGGCTGTGAGACAAAGGCAACAGGCTAAGCAGGAGGTGCAAGAGAGCTATGCACTCTTGCAGGGACAAAAGGATCAGCTTCAGGAGCAGGTGGCTACCCTGCAgaccactgcacatcggctacAAGGAGACAAAACTGAGCTGGAGAGGGCACTTCTCCGTCTGGAAAAAGACAGGTCATCTCTAAAGCGTACCCTGGAGAAGGTAGAAAAAAATCGCCAAAGAAAGGAGGCAGAGATATTGCATGTGGAGCGTGAGAGAGAACAGCAAGAACAAAAGATACGAAATCTAGAGCAAGATCTAAGCGAGACGCAGGCCGAAATTCACACTCTACAGTCACAGATCTCTATTTTGGAGCAAACTCACTCCCAGAGGCTCCTGGAAGTGACTGCTCGCCACAGGCAAGAACTGGACTTAGAGACAGAGCGGATGAGGGACTCCCAGCAGCAGGCAGAGAGAGCACTGGAGGCTCGAGAGAAAGCTCACCGCCAGAGGGTCCACTGCTTGGAGGAACAGGTTTGCACACTAAAAGAACAGTTGGAGCAGGAGATGAAGAGGAGGCAAGCGTATATGAAGCAGATGATGAGATTGGGGCTCTAAAAACCATAGCGCTTTTTCAGCCCATGGTGACCAactaacagatttttttttaccaaaaatctTTATAGTCTCTCAAAGGCCTATAACCAATGAAACAGGGCCTGTTCTAACATGAATGGACTTATGTATAATGAAAtgttacacatacacacacacatactttagATTTAAACCTCACAAAATCACTGGTCTCAGGGAGAATTGTTGGACTACATTTGCACAAATACTTTAAGTAATCCTGATCCACACCATAAGAACccaataacaacaaacaaagaGATCACTGTTTCACCAAATGCTTCTCAATTGCCAAATTGTTTTAAGGATTTGTGCAGCAAACTGTTGAAACAGACCATAAATCTACCTTAAGTCTATCCCTGTTCATCTTAGAGTATTAAGCATAGTCTGAATTCTacaccacacacacttttaaacatCTGTACCTACCTTAAACATTACACCCTAGTTCCCCCAAACTGTTTTGCAAACCACAAAATTATGCTATTTTCTTTCTACTTTGTAGCTTACATGATTGCTTTGATAAATTAAACCATTTAGAGAATAATCATCTTGTTTTAGTTAGCACCAATCAGCTAAAATACAGTTAGAGTAAATCAGGACAGATAATGAGTCATATATCTTAACTACAAATGCTTtcttaaaagtaatgttttcatATGGTGTTTTTCTAATTATGGGTGTTAAAACAATTTCTGTTTCATAATCAGTGCTATGTTGTAACTATTAGAAAACTGATTTGTTTCATCAGAAAGTAATTTTTATGAGTCAATAAAACCatacaaacaagaaaaa

Function

symbol description
crocc2 Located in ciliary base. Orthologous to several human genes including CROCC (ciliary rootlet coiled-coil, rootletin).

NR:

description
PREDICTED: rootletin-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU66085 False 678 TUCP 0.51 4 12766183 12780920
TU66087 False 255 lncRNA 0.47 3 12786119 12788171
XM_043241197.1 True 7324 mRNA 0.50 38 12765821 12805700

Neighbor

gene id symbol gene type direction distance location
LOC122346411 klhl30,LOC107753621,LOC107694118,LOC107696751,LOC107752665,LOC107593185 coding upstream 122 12760860 ~ 12765699 (+)
LOC122346842 LOC107752644,LOC107696763,LOC107593183,LOC107552264,LOC107753650,LOC107694115 coding upstream 5413 12740819 ~ 12760408 (+)
LOC122347050 tmem131,LOC107659030,LOC107692350 coding upstream 34738 12704645 ~ 12731083 (+)
LOC122346426 klhl30,LOC107753621,LOC107694118,LOC107696751,LOC107752665,LOC107593185 coding upstream 296404 12464542 ~ 12469417 (+)
LOC122346457 scly,LOC107552249,LOC107552250,LOC107752645 coding upstream 321580 12439100 ~ 12444241 (+)
sned1 sned1,LOC107694110,LOC107753672,LOC107696765,LOC107593186 coding downstream 800 12806500 ~ 12835911 (+)
ryk ryk,LOC107752642,LOC107696766,LOC107694116,LOC107753628 coding downstream 32529 12838229 ~ 12877785 (+)
slco2a1 LOC107753639,LOC107694117,LOC107552274,LOC107593170,LOC107696767,LOC107752643 coding downstream 75634 12881334 ~ 12897897 (+)
rab6ba rab6ba,rab6b,LOC102207753,LOC100696791,LOC103151367 coding downstream 138595 12944295 ~ 12965465 (+)
cep63 cep63,LOC107590660,LOC107694114,LOC107552272 coding downstream 166391 12972091 ~ 12981529 (+)
G44622 NA non-coding upstream 66244 12664820 ~ 12699577 (+)
G44611 NA non-coding upstream 94156 12564092 ~ 12671665 (+)
G44606 LOC107593190,LOC107696746,LOC107552261,LOC107753661,LOC107694109,LOC107752664 non-coding upstream 272179 12492953 ~ 12493642 (+)
G44604 NA non-coding upstream 283639 12477124 ~ 12482182 (+)
G44568 sox14,LOC107679857,LOC107756185,LOC107713406,LOC107713405,LOC107694108,LOC103365676 non-coding upstream 501034 11779030 ~ 12264787 (+)
G44615 NA non-coding downstream 277680 13083380 ~ 13084230 (+)
G44640 NA non-coding downstream 288156 13093856 ~ 13095910 (+)
LOC122346816 NA non-coding downstream 295579 13101279 ~ 13103566 (+)
G44872 NA non-coding downstream 507853 13313553 ~ 13313854 (+)
G44873 NA non-coding downstream 529489 13335189 ~ 13335542 (+)
LOC122347491 LOC107593172,LOC107593170,LOC107694117,LOC107753639,LOC107552274 other upstream 238864 12521773 ~ 12526957 (+)
scly scly,LOC107552249,LOC107552250,LOC107752645 other upstream 605922 12154268 ~ 12159899 (+)
G44588 NA other upstream 673366 12087399 ~ 12092455 (+)
LOC122346564 LOC107733248,LOC107694106,LOC107576895 other upstream 755282 12002147 ~ 12010539 (+)
G44478 LOC107749977,LOC107730703,LOC107675437,LOC107564626,LOC107698886,LOC107555394 other upstream 1345491 11415273 ~ 11420330 (+)
smx5 lsm2,LSM2,smx5 other downstream 274865 13080565 ~ 13082119 (+)
G44645 NA other downstream 303035 13108735 ~ 13109366 (+)
G44887 NA other downstream 588529 13394229 ~ 13409912 (+)
meltf mfi2,LOC107692364,LOC107709202,LOC107659038,LOC107591189,LOC107739178,LOC107590629 other downstream 1166473 13972173 ~ 13980286 (+)
pomgnt1 pomgnt1,LOC107675946,LOC107692396 other downstream 2430465 15236165 ~ 15244280 (+)

Expression


Co-expression Network