LOC122347614 (rab6ba,rab6b,LOC107696768,LOC107552273,LOC102207753,LOC100696791,LOC107694122,LOC103354239)


Basic Information

Item Value
gene id LOC122347614
gene name rab6ba,rab6b,LOC107696768,LOC107552273,LOC102207753,LOC100696791,LOC107694122,LOC103354239
gene type misc
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056704.1
NCBI id CM032073.1
chromosome length 27473687
location 12525756 ~ 12897718 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>TU66261
TTAAGAACCTTagcaaaaaaaaattaaaaaattaaaaacaagcacaaagtgtataataaaacagcattatcaggtataaaaatatattgtacaaacTTTTGAtgcttattttcaaaatgtcttcacaTTTGAAAGTATAATTTGAAATCTACTACATGGctacaataattatttgaagCTACACACGCCTCAACTCACACACAGCTTGATATTCGACACACTCGTGTGTATCTGTGTGCATTTGGGTATAAAGAGCGCCCCGCATCCTTCACATAGTCTTCAAATACACAtacaccaaaaaaagaaaagaaatgaatcatCAAATTGCGTATTAACCAAATCTTAAGGACAACATACAGACATTTCTGTCACAAGTTCTGTGACCTCTCCAAAGACGCCACCGTCCGTTGACGAGAGCCGTGGCTATAAAGTATGATAAACTGTTTATAGTGCTATACGTAGTTAATTATTAATACCAGAAAAACTGTGTGAAGTTGGAAAATCCCTGAATCTGTCCAGTTATTGCTCCGCAGGTGGAAATAAATACCCAAGAAGTTAGTGCACAACTTGAGAAAAGTCCAAACTGAATTCATCGCATTTCCAGCCAGATGTTGAAAGGAGGAGGGGTTTCTGACGAGAAATATCCAGGGGCTCAATTCACTGAGAGGGCTCTCAAAAGTGAGCTGCGATGGGCTAAGCAGAGTCGAGGCATCACAGGGGTCCCTCTGGCTTGTTCTCTAAGCTGTACTCTCTGGTCCGCTGCATTTTCCAGCCAATAAATGCCAGGAGCGCAATGCCTACCGTCTTAAAGCCCACCTGCAGTCCTAGATA
>TU66268
tataataaaacagcattatcaggtataaaaatatattgtacaaacTTTTGAtgcttattttcaaaatgtcttcacaTTTGAAAGTATAATTTGAAATCTGCTACGGGctacaataattatttgaagCTACACACGCCTCAACTCACACACAGCTTGATATTCGACACACTCGTGTGTATCTGTGTGCATTTGGGTATAAAGAGCGCCCCGCATCCTTCACATAGTCTTCAAATACACAtacaccaaaaaaagaaaagaaatgaatcatCAAATTGCGTATTAACCAAATCTTAAGGACAACATACAGACATTTCTGTCACAAGTTCTGTGACCTCTCCAAAGACGCCACCGTCCGTTGACGAGAGCCGTGGCTATAAAGTATGATAAACTGTTTATAGTGCTATACGCAATTTGatgattcatttctttttcttttttggtgtaTGTATTTGAAGACTATGTGAAGGATGCGGGCGCTCTTTATACCCAAATGCACACAGATACACACGAGTGTCGAATATCAAGCTGTGTGTGAGTTGAGGCGTGTGTAGcttcaaataattattgtagCCCGTAGCAGATTTCAAATTATACTTTCAAAtgtgaagacattttgaaaataagcaTCAAAAgtttgtacaatatatttttatacctgataatgctgttttattatacactttgtgcttgtttttaatttttaattttttttgccatggttcttaaaacaaatgacaacaTGCTTTTATAATTGCTGCTTGGAGTAATGAATCGTGACTTTCTAAGTCTTTATTATTCAATATGTAACATATATTTACCAATGTGTaacttatttcaaatataaaatttgttcacaatttgttgcttttttatttcgCCACTTGACTGATCTTTAAAGAAAgcaaatgtctgtttttttttataattgagaCTTTTATCTAAATCATTTTGCGtaatttcaatttcataatTTACTTCTCATCTTTTGACTCGATCTTTATCTTGCAAAATCTTAGGAGATGCACATATTGCAATCTGGGTCTTGTCAAACTCTTCTGATGTTATTTAGCATTATCATTAATGCTGTTACTACTTCATTTAAACGAAGTCACCAAACTTGCgcaattataaatatgtttgtaatctatgattttttttttttcttctattagCAAAATGGGAATTCTTTCCAAGTGCCCCCTGGAACCCACTTAATTACCCCCTAGGTAGGTACATATATACCCCTGCTTGGGAATTTCTGGTCACACAGGCATGCTTTAAATGACCAGCTTTTGAAATCTACCCCGGGCACCAAccaattaacaaataaatcaagcaTTGTCAAGATATGCCTGTTATAAGatagatctatatatataatcaaaagcATATGTAGGCGATACAGCATGACGTCATGCTCTGTGGGTTGCTACAGCATGACGTCACGCTCCGTGGGTCGATACAGCATTACGTCTTGCATgcgcgtgagagagagagagagagcgggagaggTGAGGCCGCGCATGCGCAGCTGCCCAGCCTGACAGCCGATCCAGTGCAGCATTCCCGTTTCCTAACGCACAGGAGCGCCGCTTTTTCCATCGCGCTGCCCCATCCAGACATTCACACCGGTGGGAACACGCTGTTAAAAACAAGCCCTCAAACATGTCTGTGGGTAGTGACTTTGGAAACCCTTTAAGGAAATTCAAACTCGTCTTTCTTGGAGAGCAAAGCGGTGAGTGACACATCGGAATTGCCGAGGAAGTTTTAGTAACGAGcgttattattgattatttacaTGCACCTGCTTGATTTGAACACGATGAAGACATTGTATCGAACATCAGATTCGTAAGCCAGTGTATCGCATCTGTATCGTGTTCAAATCAAGCAGGTGCAtgtaaataatcaataataacgCTCGTTACTAAAACTTCCCTCGGCAATTCCGATGTGTCACTC
>TU66270
tataataaaacagcattatcaggtataaaaatatattgtacaaacTTTTGAtgcttattttcaaaatgtcttcacaTTTGAAAGTATAATTTGAAATCTGCTACGGGctacaataattatttgaagCTACACACGCCTCAACTCACACACAGCTTGATATTCGACACACTCGTGTGTATCTGTGTGCATTTGGGTATAAAGAGCGCCCCGCATCCTTCACATAGTCTTCAAATACACAtacaccaaaaaaagaaaagaaatgaatcatCAAATTGCGTATTAACCAAATCTTAAGGACAACATACAGACATTTCTGTCACAAGTTCTGTGACCTCTCCAAAGACGCCACCGTCCGTTGACGAGAGCCGTGGCTATAAAGTATGATAAACTGTTTATAGTGCTATACGTAGTTAATTATTAATACCAGAAAAACTGTGTGAAGTTGGAAAATCCCTGAATCTGTCCAGTTATTGCTCCGCAGGTGGAAATAAATACCCAAGAAGTTAGTGCACAACTTGAGAAAAGTCCAAACTGAATTCATCGCATTTCCAGCCAGATGTTGAAAGGAGGAGGGTTTCTGACGAGAAATATCCAGGGGCTCAATTCACTGAGAGGGCTCTCAAAAGTGAGCTGCGATGGGCTAAGCAGAGTCGAGGCATCACAGGGGCTCAATTCACTGAGAGGGCTCTCAAAAGTGAGCTGCGATGGGCTAAGCAGAGTCGAGGCATCACAGGGGTCCCTCTGGCTTGTTCTCTAAGCTGTACTCTCTGGTCCGCTGCATTTTCCAGCCAATAAATGCCAGGAGCGCAATGCCTACCGTCTTAAAGCCCACCTGCAGTCCTAGATACCTGCGACAAGCCATCACGATCATCATCAGTGCCACTTCTTTATTATTTGCCGACGCTAATTAGTGTAGCCTGCTTTCTGTTTTAGCGATATTTGACACAAATGTACCTTTCGTAATGCATTTGGGTCAAAAGAGAACATATTCTTACCTGTTTCTAAGGAGGTTGTTGTCATAGTAACCACATCCTTGCTTTTCTCACAAGCAATTTTCCACCAGATACACGTGGAATCTATGGTCATCCCAA
>XM_043243024.1
GCCCAGCCTGACAGCCGATCCAGTGCAGCATTCCCGTTTCCTAACGCACAGGAGCGCCGCTTTTTCCATCGCGCTGCCCCATCCAGACATTCACACCGGTGGGAACACGCTGTTAAAAACAAGCCCTCAAACATGTCTGTGGGTAGTGACTTTGGAAACCCTTTAAGGAAATTCAAACTCGTCTTTCTTGGAGAGCAAAGCGTGGGGAAGACTTCCCTGATCACACGCTTCATGTACGACAGCTTTGACAACACGTATCAGGCGACAATTGGAATTGACTTCCTGTCAAAAACCATGTATTTGGAGGACAGAACGGTTCGGTTGCAGTTGTGGGACACGGCAGGCCAGGAACGTTTCAGGAGCCTCATTCCGAGCTATATAAGAGACTCCACCGTAGCTGTGGTGGTGTATGACATCACaaatGTGAATTCATTCCAGCAAACTTCCAAATGGATCGATGATGTGAGAACGGAGGAGAGAAGTGATGTCATCATCATGCTGGTGGGCAATAAAACAGATCTGGCAGATAAGAGGCAAATCACGATCGAGGAAGGCGAGCAGCGGGCCAAGGAGCTGAGTGTGATGTTTATCGAGACCAGTGCCAAGACAGGCTACAATGTCAAACAGCTGTTTCGACGTGTGGCAGCTGCCCTTCCAGGAATGGAGAGCATGCAAGAGACAAGCAAAGAAGGCATGATTGACATTAAATTGGACAAACCACAGGAGCCTCCGACTACCGAGGGTGGATGTTCCTGTTAATAGCTCACATCTGATTTCCAGCATCATCTACACCACGTGCTTGTTGTGTTGCTTCCTCTTGGTTAGCTTCCAGTTGTGTTTTCAGATTGGATATTTGGCCTTCCCATCTGACTTTAGTAACTGGTTGGAATCAGTGTTACAtcaatttcaaatgtaaaatagtaTACTTTAGTAACAAAATTGCCAAAAATCCTAAAAATtcaaatcaacaaaaatgta

Function

symbol description
rab6ba Predicted to enable GTPase activity. Predicted to be involved in Golgi vesicle transport; intracellular protein transport; and retrograde transport, endosome to Golgi. Predicted to be active in Golgi apparatus. Orthologous to human RAB6B (RAB6B, member RAS oncogene family).
rab6b Enables myosin V binding activity. Predicted to be involved in Golgi vesicle transport; intracellular protein transport; and retrograde transport, endosome to Golgi. Located in Golgi apparatus.

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU66261 False 831 lncRNA 0.40 2 12526000 12572671
TU66268 True 1962 lncRNA 0.38 3 12527848 12897718
TU66270 False 1091 lncRNA 0.42 2 12525756 12897718
XM_043243024.1 False 978 mRNA 0.46 9 12630812 12699547

Neighbor

gene id symbol gene type direction distance location
LOC122346505 sox14,LOC107679857,LOC107756185,LOC107713406,LOC107694108,LOC103365676 coding downstream 261043 12262919 ~ 12264713 (-)
zgc:103559 zgc:103559,LOC107752646,LOC107696750,LOC107552265,LOC107733245,LOC108427664 coding downstream 431016 12088224 ~ 12094740 (-)
agxta agxta,agxt,LOC107696749,LOC107552266,LOC108427662 coding downstream 438163 12084281 ~ 12087593 (-)
dtymk dtymk,LOC107593168,LOC107694123,LOC107696762,LOC107552279 coding downstream 442216 12081977 ~ 12083540 (-)
stk25a LOC107733254,LOC107593165,LOC107694119,LOC107696758 coding downstream 463338 12055892 ~ 12062418 (-)
im:7152348 LOC107717945,LOC107694124,LOC107590683,LOC107752641,LOC107696753,LOC107552260 coding upstream 69382 12967100 ~ 12970628 (-)
trnap-ugg_5 NA coding upstream 73365 12971083 ~ 12971154 (-)
trnap-cgg_1 NA coding upstream 73760 12971478 ~ 12971549 (-)
bcl6aa bcl6,LOC107717934,LOC107752633 coding upstream 188382 13086100 ~ 13109224 (-)
tbc1d23 tbc1d23,LOC107731832,LOC107590650,LOC107574489,LOC107752629 coding upstream 492985 13390703 ~ 13407082 (-)
G44730 LOC107552274,LOC107593170,LOC107694117,LOC107696767,LOC107753639 non-coding downstream 456 12523956 ~ 12525300 (-)
G44705 NA non-coding downstream 88007 12149834 ~ 12437749 (-)
G44501 NA non-coding downstream 1096993 11428125 ~ 11428763 (-)
G44460 NA non-coding downstream 1283250 11242277 ~ 11242506 (-)
G44459 NA non-coding downstream 1283724 11241637 ~ 11242032 (-)
G44784 NA non-coding upstream 87094 12984812 ~ 12985135 (-)
G44787 NA non-coding upstream 91387 12989105 ~ 12989307 (-)
G44798 NA non-coding upstream 127389 13025107 ~ 13026209 (-)
LOC122346940 NA non-coding upstream 316324 13214042 ~ 13243671 (-)
G44863 NA non-coding upstream 381965 13279683 ~ 13279882 (-)
brdt brdt,LOC107678354,LOC107749988,LOC107675431,LOC107730697,LOC107564432 other downstream 1456290 11055035 ~ 11069466 (-)
gng12b LOC107555383,LOC107678346,LOC107705318,LOC107564436,LOC105895117,LOC108271932 other downstream 1540624 10948692 ~ 10985132 (-)
ntn1a ntn1a,LOC107555375,LOC107704007,LOC107733905,LOC107569361,LOC107757426,LOC107660463,LOC105903456,LOC106587088,LOC105012279 other downstream 1690231 10578989 ~ 10835525 (-)
G44358 zgc:158654,LOC107733898,LOC107555378,LOC107704002,LOC107757422,LOC107660467 other downstream 1809015 10710045 ~ 10716741 (-)
usp43a usp43a,LOC107733909,LOC107704008,LOC107555366,LOC107659855,LOC107728176,LOC107561022 other downstream 2016753 10434204 ~ 10509003 (-)
tmem131 tmem131,LOC107659030,LOC107692350,LOC107732007 other upstream 757542 13655260 ~ 13681294 (-)
pex5la pex5la,LOC107709207,LOC107590632,LOC107659033,LOC107692357,LOC107548659,LOC107732026 other upstream 820484 13718202 ~ 13785903 (-)
G45257 ttc22,LOC107590622,LOC107692368,LOC107659045,LOC107591163 other upstream 1262757 14160475 ~ 14193166 (-)
LOC122347580 ttc4,LOC107738930,LOC107659046,LOC107709194,LOC107692369 other upstream 2429865 15327583 ~ 15330851 (-)
insl5a LOC107692440 other upstream 2591400 15489118 ~ 15490685 (-)

Expression


Co-expression Network