LOC122346508


Basic Information

Item Value
gene id LOC122346508
gene name NA
gene type non-coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056704.1
NCBI id CM032073.1
chromosome length 27473687
location 13589885 ~ 13594601 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>TU66580
CTGCAGCGCCGCTTCAAGTCGAACTTAATGTCGAGTAAACAATAGAGGGTGCGGTTAGTTTTTTCTACTGCAAACATATTGGATGTAGTAAAATACgcgtttcattcagaaatgaacactggCAGTTTGAGGGGCGTGGTTAAGGAAGTCAAGCTCATGCTCAAAccgtcaaactgatgtcatcagagaagcGTCGTTGTTCTGGaggggaggagcattttcagGTCCTATCCCAGGATGGTCAGGAACGACtggcagcagagacagacagaagactGTGTCAAGGGAAGACACGGGTTCACAAGAGGAAACCTACCGTGGAAGATACACTTATAGGATCTCCATGGAGAATCAGCTATATGGAGCACCTAAGACAGTACAGGGGATGACTGGAACCGGGAAAGCTTCAGCTTCTGGCTTCAGACTGCTCCACAAAGTCTGACTGCTGAGGGTGTCGGAGGAAGCCCCACCAGGGTTCACTGACCGGAGAACTTTACTGGAGGAGAAAAATAGTGCTTGTGTCCCCGGATGAGGGGGAATGGCGCAGCATGCGTGACACTGGCCAGTTCTTCACGGCAATTACCTGTTACCCAACACACGGGAAGCGACTGGCTCCAGGGGAAGACTGTAGTACCTTGTGAAGGTGTTCGGTGTCAGATCTGCAGATGTCTGCCAGTGAAGCACCGTGTGCCAATGCAAAGGAGGAGGCAACACTTACCCCTAGGGGGCACGGAGCACCTAGGGCCTGTTAAGCCAAGGTGATGGTATCCGCTATCCAGTGGGCCAACCTCTGCTTGGAGACAACCTTCCCTTTCTGCTGACCTTCGTGACAGACAAAAAGCTGCTCAGAGCTTCTGAAGCTCTGGGTGCCCTCCACATCTATGCATAGAGCTCTGACGGGACACATCAACGtatatttaatactgttttttatttgaaaacacaaTAGTGTTATCacactttataatttttttctattatatcatttgtaaataattaattcattcctTTTTCATAGTTAATGCTCCTTTAAATGCTCCTGCgattaattatgtttttgaaacCTAACAGATTGTAGAATTAGTATGGTATGTACCAATCACCAACATTTAAGTTTAGTGCTGAAAGATATGACAGTGGTCTTTCAGATGCACTGTCATTCTCCATCGATTACTATGACCTTGTGATATCCTCTGTCTCGCTAACATTCAGCGAGCATGTCACTACTAGGGATCTCACATGGCTGGGTGGCTAGAGCTCTACATTAAAACAGCCACCATTCAAGGGCGGAGTCTATTGTGGTCTCCATCTATTGGTGGCTTACACCACAGAGGGGTGTGGGTTACCTCCACGTCAAGACCAATCGTTTTACTAGCTTTTTTGAAAGCACAATATTGACTTTTGTTTCTCTCACATGTCACTGTGGAGCAGCCTGTGAGCTTGTTAAGTTAAGTGAGCCTATCTGCCAAGGgagaagatttttttgtttaactttcaGTGTTTTATAGTGACATGGTTTGTGCTAATTTTCTGATTCAGTGTGACTAAATATGTGTAACCTGCTCACAAAATCTGCCCACCCTTAATGTGACATTAGCTGTGTGTCACTCTCCTCACTGACACAAAGTTTATCAGGCACTCTCAggaataaaggtacaaaagttgtcACCGGGGTGGTACCTTTTTAACAGGTACATGCTTGTCTCTCCATTTTAGTAactaaaaggtacatattaatacttaaagtGGACCTAATAGgtcaatatatacatttataataataaataaaacatttgaacctaataggttaccttttgaaaaggtaccatcACAGTGTCCCAAAGTGCATGGTGGATAATCTTGCTTATCTCTGACAAGTGTGCTTATATGCTTTCAGTTTCTTATAACGTCATGCTCAGATACATagataacaacaaaaacaggttAATTTGCAACATTAGCCTTTGCAcacttttacagtatttacctCGCACAATGTATTCACATAGCATAAGGTTAATCGCATCAgcataaatgcacacattattttaaaaaaatatatatagcatagCTGAGTGCATACAGCAAATAGCGTGCCATTTTTGGAGCAGGAGGGTTATTGATTATGCAGCCAGTCTGGCCCACACTTCCCTCAGGCTGTGTCCCTCATTGGGAGCTAGGTTGACTGTCTCTTCATCACTTCCTAGATCTCTCCTCTAATTGTGTGTGTGGAGATGAGCTCAGGCACCCCGCTAACCTGCTGGCTCCAGGACGACCTGGCAGAAACATGAGGCGAGCGAGCAGAAGAAATGATTGGAAGCCAGATATGGGAGGCTCTTTTCGCAGTTATGAGAAGAAAGTCAAGATTGCAAGATATATGGAAGTACAAGAGTTTATATgagtttacattttgcaattcagctttttttttttttcacagaaaaaaatttcaaattgtgaaatataaaaaagtagtgctgggcaatgattaatccttattatgtgtgtgtatactatatacatatacatatacata
>XR_006251135.1
GGTGTTacatcaaagtaccgcgagagTGTATATACGAGCATATGGAACCATCAGCTGTCGAAcgctctcgcggtactttgatgtcacacACCGATCGGTCGCTGCAGCGCCGCTTCAAGTCGAACTTAATGTCGAGTAAACAATAGAGGGTGCGGTTAGTTTTTTCTACTGCAAACATATTGGATGTAGTAAAATACgcgtttcattcagaaatgaacactggCAGTTTGAGGGGCGTGGTTAAGGAAGTCAAGCTCATGCTCAAAccgtcaaactgatgtcatcagagaagcGTCGTTGTTCTGGaggggaggagcattttcagGTCCTATCCCAGGATGGTCAGGAACGACtggcagcagagacagacagaagactGTGTCAAGGGAAGACACGGGTTCACAAGAGGAAACCTACCGTGGAAGATACACTTATAGGATCTCCATGGAGAATCAGCTATATGGAGCACCTAAGACAGTACAGGGGATGACTGGAACCGGGAAAGCTTCAGCTTCTGGCTTCAGACTGCTCCACAAAGTCTGACTGCTGAGGGTGTCGGAGGAAGCCCCACCAGGGTTCACTGACCGGAGAACTTTACTGGAGGAGAAAAATAGTGCTTGTGTCCCCGGATGAGGGGGAATGGCGCAGCATGCGTGACACTGGCCAGTTCTTCACGGCAATTACCTGTTACCCAACACACGGGAAGCGACTGGCTCCAGGGGAAGACTGTAGTACCTTGTGAAGGTGTTCGGTGTCAGATCTGCAGATGTCTGCCAGTGAAGCACCGTGTGCCAATGCAAAGGAGGAGGCAACACTTACCCCTAGGGGGCACGGAGCACCTAGGGCCTGTTAAGCCAAGGTGATGGTATCCGCTATCCAGTGGGCCAACCTCTGCTTGGAGACAACCTTCCCTTTCTGCTGACCTTCGTGACAGACAAAAAGCTGCTCAGAGCTTCTGAAGCTCTGGGTGCCCTCCACATCTATGCATAGAGCTCTGACGGGACACATCAACGtatatttaatactgttttttatttgaaaacacaaTAGTGTTATCacactttataatttttttctattatatcatttgtaaataattaattcattcctTTTTCATAGTTAATGCTCCTTTAAATGCTCCTGCgattaattatgtttttgaaacCTAACAGATTGTAGAATTAGTATGGTATGTACCAATCACCAACATTTAAGTTTAGTGCTGAAAGATATGACAGTGGTCTTTCAGATGCACTGTCATTCTCCATCGATTACTATGACCTTGTGATATCCTCTGTCTCGCTAACATTCAGCGAGCATGTCACTACTAGGGATCTCACATGGCTGGGTGGCTAGAGCTCTACATTAAAACAGCCACCATTCAAGGGCGGAGTCTATTGTGGTCTCCATCTATTGGTGGCTTACACCACAGAGGGGTGTGGGTTACCTCCACGTCAAGACCAATCGTTTTACTAGCTTTTTTGAAAGCACAATATTGACTTTTGTTTCTCTCACATGTCACTGTGGAGCAGCCTGTGAGCTTGTTAAGTTAAGTGAGCCTATCTGCCAAGGgagaagatttttttgtttaactttcaGTGTTTTATAGTGACATGGTTTGTGCTAATTTTCTGATTCAGTGTGACTAAATATGTGTAACCTGCTCACAAAATCTGCCCACCCTTAATGTGACATTAGCTGTGTGTCACTCTCCTCACTGACACAAAGTTTATCAGGCACTCTCAggaataaaggtacaaaagttgtcACCGGGGTGGTACCTTTTTAACAGGTACATGCTTGTCTCTCCATTTTAGTAactaaaaggtacatattaatacttaaagtGGACCTAATAGgtcaatatatacatttataataataaataaaacatttgaacctaataggttaccttttgaaaaggtaccatcACAGTGTCCCAAAGTGCATGGTGGATAATCTTGCTTATCTCTGACAAGTGTGCTTATATGCTTTCAGTTTCTTATAACGTCATGCTCAGATACATagataacaacaaaaacaggttAATTTGCAACATTAGCCTTTGCAcacttttacagtatttacctCGCACAATGTATTCACATAGCATAAGGTTAATCGCATCAgcataaatgcacacattattttaaaaaaatatatatagcatagCTGAGTGCATACAGCAAATAGCGTGCCATTTTTGGAGCAGGAGGGTTATTGATTATGCAGCCAGTCTGGCCCACACTTCCCTCAGGCTGTGTCCCTCATTGGGAGCTAGGTTGACTGTCTCTTCATCACTTCCTAGATCTCTCCTCTAATTGTGTGTGTGGAGATGAGCTCAGGCACCCCGCTAACCTGCTGGCTCCAGGACGACCTGGCAGAAACATGAGGCGAGCGAGCAGAAGAAATGATTGGAAGCCAGATATGGGAGGCTCTTTTCGCAGTTATGAGAAGAAAGTCAAGATTGCAAGATATATGGAAGTACAAGAGTTTATATgagtttacattttgcaattcagctttttttttttttcacagaaaaaaatttcaaattgtgaaatataaaaaag

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU66580 False 2536 lncRNA 0.43 3 13589986 13594601
XR_006251135.1 True 2573 lncRNA 0.43 3 13589885 13594537

Neighbor

gene id symbol gene type direction distance location
rpl5b rpl5b,rpl5,LOC107659024,LOC107590646,LOC107732018,LOC107566486,LOC107692344,LOC103368809 coding upstream 47318 13536511 ~ 13542567 (+)
LOC122347353 LOC107731845,LOC107659022,LOC107692422 coding upstream 117952 13469404 ~ 13471933 (+)
tp63 tp63,LOC107574491,LOC107590651,LOC107659018,LOC107752631,LOC107696778 coding upstream 199234 13350521 ~ 13390651 (+)
tprg1 tprg1,LOC107590652,LOC107751286,LOC107684336,LOC107552257,LOC107696755,LOC107752662 coding upstream 256311 13314057 ~ 13333574 (+)
LOC122346939 lpp,LOC107684332,LOC107590653,LOC107717931,LOC107696776,LOC107752632,LOC107552245,LOC108427685 coding upstream 310705 13119195 ~ 13279180 (+)
atp1b1a NA coding downstream 3938 13598539 ~ 13607514 (+)
zgc:172121 zgc:172121,LOC107659029,LOC107692348,LOC107732016,LOC107590642,LOC107731828 coding downstream 44393 13638994 ~ 13644273 (+)
si:ch211-201h21.5 si:ch211-201h21.5,LOC107659008,LOC107731846,LOC107590672 coding downstream 57795 13652396 ~ 13655156 (+)
actl6a actl6a,LOC107659031 coding downstream 89828 13684429 ~ 13690950 (+)
ndufb5 LOC107659010,LOC107709185,LOC107590679,LOC107578042 coding downstream 98776 13693377 ~ 13696789 (+)
G44899 NA non-coding upstream 172045 13417558 ~ 13417840 (+)
G44898 NA non-coding upstream 172913 13416759 ~ 13416972 (+)
G44890 NA non-coding upstream 190337 13399022 ~ 13399548 (+)
G44886 NA non-coding upstream 231897 13357403 ~ 13357988 (+)
G44885 NA non-coding upstream 233261 13356269 ~ 13356624 (+)
G44997 bivm,LOC107732014,LOC107659026,LOC107548643,LOC107731835,LOC107692346 non-coding downstream 55514 13650115 ~ 13650883 (+)
LOC122346715 NA non-coding downstream 61591 13656192 ~ 13657766 (+)
G44998 LOC102783117 non-coding downstream 67211 13661812 ~ 13662097 (+)
G45056 NA non-coding downstream 242006 13836607 ~ 13836819 (+)
G45070 NA non-coding downstream 265654 13860255 ~ 13860609 (+)
G44887 NA other upstream 179973 13394229 ~ 13409912 (+)
G44645 NA other upstream 480519 13108735 ~ 13109366 (+)
smx5 lsm2,LSM2,smx5 other upstream 507766 13080565 ~ 13082119 (+)
crocc2 crocc2,LOC107593190,LOC107753661,LOC107694109,LOC107752664,LOC107552261,LOC107696746 other upstream 784185 12765821 ~ 12805700 (+)
LOC122347491 LOC107593172,LOC107593170,LOC107694117,LOC107753639,LOC107552274 other upstream 1062928 12521773 ~ 12526957 (+)
meltf mfi2,LOC107692364,LOC107709202,LOC107659038,LOC107591189,LOC107739178,LOC107590629 other downstream 377572 13972173 ~ 13980286 (+)
pomgnt1 pomgnt1,LOC107675946,LOC107692396 other downstream 1641564 15236165 ~ 15244280 (+)
G45419 sgip1,sgip1a,LOC107739126 other downstream 1764260 15358861 ~ 15459386 (+)
G45448 LOC107585177,LOC107673508,LOC107711046,LOC107748403,LOC107582692 other downstream 1970380 15564981 ~ 15566668 (+)
G45894 NA other downstream 3592107 17186708 ~ 17187308 (+)

Expression


Co-expression Network