G45075 (lrrc7,LOC107659039,LOC107709201)


Basic Information

Item Value
gene id G45075
gene name lrrc7,LOC107659039,LOC107709201
gene type non-coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056704.1
NCBI id CM032073.1
chromosome length 27473687
location 13992745 ~ 13996966 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>TU66717
CTGCTCTGGAAAGCCGTCCATACTCTTCTGGCCTTTAGTCTGGATGAAGCAGCGGGCGCTCTGAGGCCGGGGGCTGGTGGTGGTGATGGGCATGGGCAGAGGCGACTGGTACTGCTGGATGGACACCTTGTTGATGGCCCCCTCATACTGCTGGTCGCGGGCCGTCCGGTGGGGAGGGTTGGCTGAGGTTATCATCATAGTCTGTTGTTGATGGGGATTGTGAACGCCAGGCTTTGATGACATTCATGTTCTCTGGTGGCACGTCTCTTCTTCCCAGTGAATACGGGGCCCACTGGCTACTTGGGGAAACCACCTCTTGTCCATTATCTAAAATATTGCTCTGTTGTGAAGGTGTCTGAAAGGATATAGTGCTGTCAGCAAGCAGAATTCAAGACACTGCTCTAGAAAGACACTGCTTTTACAAAATGAATTTGGCATGGTAAATTTCCCAAATACCTTGACTCTTTTTTGTGAACTGGCTTTTAGCATTGTTCATTGCAATTCATTGCATCacagcaaattattattattatagttattatattataaattatatccttaatgcattattctaaACAATTAGATTTCGAAAATTAATTTAGtacaatttcacaatattcaagaatgaataatgcttttaaaatgactaagcttgtgtgttttctttcgTTTTATAGTATTAATGTAGCTGATTAACTTccattgatattaaaatattttaacatctgCATGTACGTCTAGTTAAAAAGACCTTCCAATATATGATCATTATTTGGTGAAGACAGATGCTCTTGTAATAACAATTCTGCAGAATATCTATTGCTGTTAAttgcatcaaataaatattgagcttattaaaaacagctaaaaactAATTTACGAAAAGGCATGTTTGcaataaaaggaataaataatcATGGTGTTCAACACCTGGTTGGACTCGAGTTTGTGTAGCGCACTGTGCTTTATTCTCTTACAATATTCAAGTATGCAAGTAAATAGAGGTTAGTGAACAGTGCACAcagatattaataatttttagtgAATTCAAAGTGACTGATAAAGTTTGATATTTGGTGTCATTTAATAAGCACCAAGAAGGCCTTTCATAAACATATTTCTGCTATCGGTCACAGATTGCTTTGTTCTGTGAGTTAAAGACAGAAGACCAAACACAAAGACTGAGCACATGCAACAGAAAACACCTATATATGTTTAACATCACAGTGAGAGACAGTGTCTTGCCTGGAAGTGTTAGATTAGTGTTAAACTGTGAAATGTGTTAGATGGTCTATTGTAGTGTACACAAAAATGTTCcagaattatttatattaccaCTGTTTTAGAAGTTAAAGCAGGAGCTGCTCGAAAGAGAGGTCTAAAAAGAAAGTCTTGGTAGGAGACGTTATGTTCAAGTACGTTTTACTTCCTCATGCTGAAACTGGGGCTGAAGTTGCTTCATACTCACATTTGGTAGAGGTAGCCACTGAGTTGTTTGGTTTTCATGCTTTGTGTTATTGTAAAAGTTTATTGTCATGCTTCTGCTGGCATGCGGTGCAGCATAGCCTCCAGAGTACAGCATGCCGAAGTTTACTGTGTTGTGCTTAAGGACAGCGCTCTGATTGGAGGGAAACAACCACATGACATGAGTGAATGGGTGTGCCACACAGAAAGGTCAAAAGGCTGTGGCTGGGGATACACTGGACTGCACATTGCTGTAACAGAGTGAGTAAGCTTGACAAACAGAACAACAACAGAACGTCATTACTGCCCACGTGACACATTAGTGATACACAGCGGTTACACTTACAGAATATTAATAGCAGCAGTGTAGGACTAAATTACGTGAACAATGAAGTATGCTGTAGTACTGTAATCCACTTACACAGAAACAAAGGCATGTAACTGGGTGAATCTCAGGAAAGAAATGGCAGGGTCAGATTCCACCccaataaaaaagagaaaagaaatcgGTTATATTTTGCACAAAAGAATCGAAGGATTTCTGGCAATGTGACTGTTACTTTTCAGGTCAGTGAGTTTTCCTCCATCATTATTTGGTACCGtaaaagcaatttaaattagtgtaataaagtaaaaattactttaatgtaaaaaaaaaataaaaaatcagtgctgtcaaacgattaaaagtttttgttcgtgtgtttactgtttatatatttattatgtatatataatacacactatatttagaaaatattcacatgtctatgtttatattaatataatttatatataaatatttttacagatttttctgaaatgcatgggtgtgtatttatatatacataatc

Function

symbol description
lrrc7 Predicted to enable signaling receptor binding activity. Predicted to be involved in several processes, including cellular response to tumor necrosis factor; negative regulation of NF-kappaB transcription factor activity; and positive regulation of Ras protein signal transduction. Predicted to be active in basolateral plasma membrane. Orthologous to human LRRC7 (leucine rich repeat containing 7).

NR:

description
PREDICTED: LOW QUALITY PROTEIN: leucine-rich repeat-containing protein 7-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU66717 True 2318 lncRNA 0.37 2 13992745 13996966

Neighbor

gene id symbol gene type direction distance location
lrrc40 lrrc40,LOC107709203,LOC107590628 coding upstream 6916 13981225 ~ 13985829 (+)
dlg1a dlg1,LOC107659037,LOC107738730,LOC108427717,LOC108271975 coding upstream 20842 13867877 ~ 13971903 (+)
ptmaa NA coding upstream 134845 13854242 ~ 13857900 (+)
phb2b phb2b,LOC107692360,LOC107591156,LOC108427714 coding upstream 168953 13820119 ~ 13823792 (+)
pde6d pde6d,LOC107590678,LOC107591155 coding upstream 172826 13813916 ~ 13819919 (+)
shroom2a LOC107659040,LOC107738857,LOC107591159,LOC107692366,LOC107590625 coding downstream 82662 14079628 ~ 14116522 (+)
trnag-ucc_2 NA coding downstream 83967 14080933 ~ 14081004 (+)
cldn34a cldn34,cldn34a,LOC107659013,LOC107709183,LOC107590626,LOC107692425,LOC107591192 coding downstream 120825 14117791 ~ 14121182 (+)
wwc3 LOC107590624,LOC107709196,LOC107659042,LOC107738905,LOC107692367 coding downstream 136375 14133341 ~ 14170086 (+)
ttc22 ttc22,LOC107692368,LOC107590622,LOC107659045,LOC107591163 coding downstream 195619 14192585 ~ 14197319 (+)
G45070 NA non-coding upstream 132136 13860255 ~ 13860609 (+)
G45056 NA non-coding upstream 155926 13836607 ~ 13836819 (+)
G44998 LOC102783117 non-coding upstream 330648 13661812 ~ 13662097 (+)
LOC122346715 NA non-coding upstream 334979 13656192 ~ 13657766 (+)
G44997 bivm,LOC107732014,LOC107659026,LOC107548643,LOC107731835,LOC107692346 non-coding upstream 341862 13650115 ~ 13650883 (+)
G45084 LOC107739195,LOC107591162,LOC107659043,LOC107709197,LOC107590677,LOC107692437 non-coding downstream 19469 14016435 ~ 14128344 (+)
LOC122347615 NA non-coding downstream 132381 14129347 ~ 14131078 (+)
G45112 NA non-coding downstream 217245 14214211 ~ 14215282 (+)
G45095 pde4b,LOC107659050 non-coding downstream 266635 14263601 ~ 14286676 (+)
G45119 pde4b non-coding downstream 300665 14297631 ~ 14298231 (+)
meltf mfi2,LOC107692364,LOC107709202,LOC107659038,LOC107591189,LOC107739178,LOC107590629 other upstream 12459 13972173 ~ 13980286 (+)
G44887 NA other upstream 582833 13394229 ~ 13409912 (+)
G44645 NA other upstream 883379 13108735 ~ 13109366 (+)
smx5 lsm2,LSM2,smx5 other upstream 910626 13080565 ~ 13082119 (+)
crocc2 crocc2,LOC107593190,LOC107753661,LOC107694109,LOC107752664,LOC107552261,LOC107696746 other upstream 1187045 12765821 ~ 12805700 (+)
pomgnt1 pomgnt1,LOC107675946,LOC107692396 other downstream 1239199 15236165 ~ 15244280 (+)
G45419 sgip1,sgip1a,LOC107739126 other downstream 1361895 15358861 ~ 15459386 (+)
G45448 LOC107585177,LOC107673508,LOC107711046,LOC107748403,LOC107582692 other downstream 1568015 15564981 ~ 15566668 (+)
G45894 NA other downstream 3189742 17186708 ~ 17187308 (+)
G46022 NA other downstream 3998225 17995191 ~ 17996717 (+)

Expression


Co-expression Network