LOC122347615


Basic Information

Item Value
gene id LOC122347615
gene name NA
gene type non-coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056704.1
NCBI id CM032073.1
chromosome length 27473687
location 14129347 ~ 14131078 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>TU66741
CCATCTGCCTCTGTGGAGAAAAGGAGAGAAGTGGTCCTGAAATGCCTAATCGAGTACATGGGGAGAGACAGGAAGACCTCATCAGTGTCCTCCACAGTCGTGATGTGCACGCCGAGCTTGGCGGTTTCCCTTCTCAAAGTTAACATGTGCCATCACCCCGACACGATTGGGATTATCACAGAGGGACAGCCCGTGGTCAGAGGTGTTCCAAACCTGTCCAAAGCATGCTGCCTCCTGTTTGGACTTAACCTAGGCCCTTGACCTCAAGCATCCTCAAAACTGGTCTGTACGTTTGAGATATATCAGAGGCTCTTTGTGGGACTGGACCCCATGCGTCCTAAACTATCATCCAAGTATGCAAATTTG
>XR_006251242.1
cagATGTAGCATCTCGCTCAGCACGATCTGGATCTCATAGACTGATTAACACGATCTGTGCAGAGTTCCCGAGAATCAGTGTCCTATCACTTGAGTTCCTAATGGGAGGATCCATCTGCCTCTGTGGAGAAAAGGAGAGAAGTGGTCCTGAAATGCCTAATCGAGTACATGGGGAGAGACAGGAAGACCTCATCAGTGTCCTCCACAGTCGTGATGTGCACGCCGAGCTTGGCGGTTTCCCTTCTCAAAGTTAACATGTGCCATCACCCCGACACGATTGGGATTATCACAGAGGGACAGCCCGTGGTCAGAGGTGTTCCAAACCTGTCCAAAGCATGCTGCCTCCTGTTTGGACTTAACCTAGGCCCTTGACCTCAAGCATCCTCAAAACTGGTCTGTACGTTTGAGATATATCAGAGGCTCTTTGTGGGACTGGACCCCATGCGTCCTAAACTATCATCCAAGTATGCAAATTTGggagttcttaaaaataatagttgttgaatatatagaaaaaaatgtaaaaaaattctcATTGCAGTTCCAGTGTGATACAA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU66741 False 366 lncRNA 0.51 2 14130488 14130998
XR_006251242.1 True 557 lncRNA 0.46 4 14129347 14131078

Neighbor

gene id symbol gene type direction distance location
cldn34a cldn34,cldn34a,LOC107659013,LOC107709183,LOC107590626,LOC107692425,LOC107591192 coding upstream 8165 14117791 ~ 14121182 (+)
shroom2a LOC107659040,LOC107738857,LOC107591159,LOC107692366,LOC107590625 coding upstream 12825 14079628 ~ 14116522 (+)
trnag-ucc_2 NA coding upstream 48343 14080933 ~ 14081004 (+)
lrrc40 lrrc40,LOC107709203,LOC107590628 coding upstream 143518 13981225 ~ 13985829 (+)
dlg1a dlg1,LOC107659037,LOC107738730,LOC108427717,LOC108271975 coding upstream 157444 13867877 ~ 13971903 (+)
wwc3 LOC107590624,LOC107709196,LOC107659042,LOC107738905,LOC107692367 coding downstream 2263 14133341 ~ 14170086 (+)
ttc22 ttc22,LOC107692368,LOC107590622,LOC107659045,LOC107591163 coding downstream 61507 14192585 ~ 14197319 (+)
jak1 LOC107659055,LOC107709186,LOC107556544,LOC107739023,LOC107591175,LOC107692376 coding downstream 364389 14495467 ~ 14523316 (+)
LOC122347575 NA coding downstream 577430 14708508 ~ 14712351 (+)
LOC122347452 LOC107692384,LOC107739088 coding downstream 649848 14780926 ~ 14790192 (+)
G45084 LOC107739195,LOC107591162,LOC107659043,LOC107709197,LOC107590677,LOC107692437 non-coding upstream 1003 14016435 ~ 14128344 (+)
G45075 lrrc7,LOC107659039,LOC107709201 non-coding upstream 132381 13992745 ~ 13996966 (+)
G45070 NA non-coding upstream 268738 13860255 ~ 13860609 (+)
G45056 NA non-coding upstream 292528 13836607 ~ 13836819 (+)
G44998 LOC102783117 non-coding upstream 467250 13661812 ~ 13662097 (+)
G45112 NA non-coding downstream 83133 14214211 ~ 14215282 (+)
G45095 pde4b,LOC107659050 non-coding downstream 132523 14263601 ~ 14286676 (+)
G45119 pde4b non-coding downstream 166553 14297631 ~ 14298231 (+)
G45121 NA non-coding downstream 188128 14319206 ~ 14320343 (+)
G45122 NA non-coding downstream 196376 14327454 ~ 14328244 (+)
meltf mfi2,LOC107692364,LOC107709202,LOC107659038,LOC107591189,LOC107739178,LOC107590629 other upstream 149061 13972173 ~ 13980286 (+)
G44887 NA other upstream 719435 13394229 ~ 13409912 (+)
G44645 NA other upstream 1019981 13108735 ~ 13109366 (+)
smx5 lsm2,LSM2,smx5 other upstream 1047228 13080565 ~ 13082119 (+)
crocc2 crocc2,LOC107593190,LOC107753661,LOC107694109,LOC107752664,LOC107552261,LOC107696746 other upstream 1323647 12765821 ~ 12805700 (+)
pomgnt1 pomgnt1,LOC107675946,LOC107692396 other downstream 1105087 15236165 ~ 15244280 (+)
G45419 sgip1,sgip1a,LOC107739126 other downstream 1227783 15358861 ~ 15459386 (+)
G45448 LOC107585177,LOC107673508,LOC107711046,LOC107748403,LOC107582692 other downstream 1433903 15564981 ~ 15566668 (+)
G45894 NA other downstream 3055630 17186708 ~ 17187308 (+)
G46022 NA other downstream 3864113 17995191 ~ 17996717 (+)

Expression


Co-expression Network