G45127 (pde4b,LOC107659050,LOC107739135,LOC107590663,LOC107591166)


Basic Information

Item Value
gene id G45127
gene name pde4b,LOC107659050,LOC107739135,LOC107590663,LOC107591166
gene type non-coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056704.1
NCBI id CM032073.1
chromosome length 27473687
location 14371274 ~ 14372094 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>TU66798
GGAAATGGCTACAAATTAGCTGTGAATTTTTATTCCTGAAACATCTTTCGACAAAAGCAACATGCAGTCACACAAACCAGAACAGCCACAATCTACATAAtatgaagataaaataaatacttcattCACGATTTGTTGACCAAggttagattaaaaaaaaaaattttgcacTAAAGGAGACACCAAACTAGACATATTCCTACATGACCTAAGAAATGTGCATGTCCCACAATCCATATGCAAAGCCAAAATCATCAACGCAGTGACTGAATGGCaccatatttatattaaaatacaaagaataaGTCATCATACTCAGAGATGCCACGAGAAAGGGTACAATTCCTTTTCTAAATAAGTAACACTGCCAAAGCAACCGAATAAAGGAGGAAGGAGGGTTTTTATAAAGCCAGTGCAGACTAATGAAGCAACAACCTGACTTTTATagctatatttttatagtttactCTCTTCcaaaaaaacctaaatttaACTTAAACCTAGATGAAcattttgtacacattttttataagATTTTGAAAGTTGAGGAGCAGAGAAAGGCGCTGATTGACACAGACTCACCATTCAGAGTCCACAGGTGTAATGTCAATGCGAGGGGGTGTAATGAAGGGCAGTGTCGTTGGTCTTGCCATGATCTCGTCATCTGGACTGCGGGACCTCTCCGTCTGCCGCCATGATAGAGGAGGCAACTGTAGGTTACCAGAGAAACGGCGCCGCCTCCGCCGCAGGTCCACCCCCAGCGTGCAACCCGAGGAGGTGAAAGACTCACTCAGTCTGCAGTCCGGAGGCTCTTTACTGTC

Function

symbol description
pde4b Enables 3',5'-cyclic-AMP phosphodiesterase activity and cAMP binding activity. Involved in T cell receptor signaling pathway; positive regulation of interferon-gamma production; and positive regulation of interleukin-2 production. Predicted to be located in Z disc; cell periphery; and membrane. Predicted to be part of voltage-gated calcium channel complex. Predicted to be active in cytosol; nucleus; and perinuclear region of cytoplasm.

NR:

description
PREDICTED: cAMP-specific 3',5'-cyclic phosphodiesterase 4B isoform X1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU66798 True 821 lncRNA 0.41 1 14371274 14372094

Neighbor

gene id symbol gene type direction distance location
ttc22 ttc22,LOC107692368,LOC107590622,LOC107659045,LOC107591163 coding upstream 173955 14192585 ~ 14197319 (+)
wwc3 LOC107590624,LOC107709196,LOC107659042,LOC107738905,LOC107692367 coding upstream 201188 14133341 ~ 14170086 (+)
cldn34a cldn34,cldn34a,LOC107659013,LOC107709183,LOC107590626,LOC107692425,LOC107591192 coding upstream 250092 14117791 ~ 14121182 (+)
shroom2a LOC107659040,LOC107738857,LOC107591159,LOC107692366,LOC107590625 coding upstream 254752 14079628 ~ 14116522 (+)
jak1 LOC107659055,LOC107709186,LOC107556544,LOC107739023,LOC107591175,LOC107692376 coding downstream 123373 14495467 ~ 14523316 (+)
LOC122347575 NA coding downstream 336414 14708508 ~ 14712351 (+)
LOC122347452 LOC107692384,LOC107739088 coding downstream 408832 14780926 ~ 14790192 (+)
dock7 dock7,LOC107591182 coding downstream 543772 14915866 ~ 14957203 (+)
kank4 kank4,LOC107731645,LOC107704518,LOC107717130,LOC107692389,LOC107556542,LOC107591186 coding downstream 592818 14964912 ~ 15008069 (+)
G45125 pde4b,LOC107591166,LOC107692372,LOC107659050,LOC108443455,LOC106584037 non-coding upstream 7348 14362347 ~ 14363926 (+)
G45124 NA non-coding upstream 27878 14343168 ~ 14343396 (+)
G45123 NA non-coding upstream 35432 14335446 ~ 14335842 (+)
G45122 NA non-coding upstream 43030 14327454 ~ 14328244 (+)
G45121 NA non-coding upstream 50931 14319206 ~ 14320343 (+)
G45131 NA non-coding downstream 30414 14402508 ~ 14402937 (+)
LOC122346521 NA non-coding downstream 119712 14491806 ~ 14494033 (+)
G45182 NA non-coding downstream 214408 14586502 ~ 14636681 (+)
G45312 pgm1,LOC107704513,LOC107731639,LOC107556550,LOC107692428,LOC107739071,LOC107591179 non-coding downstream 394551 14766645 ~ 14767982 (+)
G45333 foxd3,LOC107717135,LOC107591180,LOC107731647,LOC107692383,LOC107704516 non-coding downstream 433211 14805305 ~ 14813679 (+)
meltf mfi2,LOC107692364,LOC107709202,LOC107659038,LOC107591189,LOC107739178,LOC107590629 other upstream 390988 13972173 ~ 13980286 (+)
G44887 NA other upstream 961362 13394229 ~ 13409912 (+)
G44645 NA other upstream 1261908 13108735 ~ 13109366 (+)
smx5 lsm2,LSM2,smx5 other upstream 1289155 13080565 ~ 13082119 (+)
crocc2 crocc2,LOC107593190,LOC107753661,LOC107694109,LOC107752664,LOC107552261,LOC107696746 other upstream 1565574 12765821 ~ 12805700 (+)
pomgnt1 pomgnt1,LOC107675946,LOC107692396 other downstream 864071 15236165 ~ 15244280 (+)
G45419 sgip1,sgip1a,LOC107739126 other downstream 986767 15358861 ~ 15459386 (+)
G45448 LOC107585177,LOC107673508,LOC107711046,LOC107748403,LOC107582692 other downstream 1192887 15564981 ~ 15566668 (+)
G45894 NA other downstream 2814614 17186708 ~ 17187308 (+)
G46022 NA other downstream 3623097 17995191 ~ 17996717 (+)

Expression


Co-expression Network