LOC122346673


Basic Information

Item Value
gene id LOC122346673
gene name NA
gene type non-coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056704.1
NCBI id CM032073.1
chromosome length 27473687
location 14263789 ~ 14279029 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>TU67011
cacacacacacaggcggcGGGTGTTTTTGAGACAGTGCGCGAAGCAGAAATCCGAGGAAATGTGGTGATATAACAACAGGTGAAGAGAGAAACTAGTGCAGTCTTGCTGGATCAGCcggtttattttctgtttacatGCTGGTTTACCTCATGGCAACCACAACATGTTTCCTTCAATCCTAGGACCTCAGATTTCAAGAAAGTCATGGAGCGGCACGCTGCACCATAACAAGGCTCCTTGGAGATAGAGGAATGCAAATCTGCAATCATGATGGAAGG
>TU67012
cacacacacacaggcggcGGGTGTTTTTGAGACAGTGCGCGAAGCAGAAATCCGAGGAAATGTGGTGATATAACAACAGGTGAAGAGAGAAACTAGTGCAGTCTTGCTGGATCAGCcggtttattttctgtttacatGCTGGTTTACCTCATGGCAACCACAACATGTTTCCTTCAATCCTAGGACCTCAGATTTCAAGAAAGTCATGCAGGAGCGGCACGCTGCACCATAACAAGGCTCCTTGGAGATAGAGGAATGCAAATCTGCAATCATGATGGAAGG
>TU67013
cacacacacacaggcggcGGGTGTTTTTGAGACAGTGCGCGAAGCAGAAATCCGAGGAAATGTGGTGATATAACAACAGGTGAAGAGAGAAACTAGTGCAGTCTTGCTGGATCAGCcggtttattttctgtttacatGCTGGTTTACCTCATGGCAACCACAACATGTTTCCTTCAATCCTAGGACCTCAGATTTCAAGAAAGTCATGGCTCCTTGGAGATAGAGGAATGCAAATCTGCAATCATGATGGAAGG
>XR_006251154.1
acacacacacacacaggcggcGGGTGTTTTTGAGACAGTGCGCGAAGCAGAAATCCGAGGAAATGTGGTGATATAACAACAGGTGAAGAGAGAAACTAGTGCAGTCTTGCTGGATCAGCcggtttattttctgtttacatGCTGGTTTACCTCATGGCAACCACAACATGTTTCCTTCAATCCTAGGACCTCAGATTTCAAGAAAGTCATGGAGCGGCACGCTGCACCATAACAAGGCTCCTTGGAGATAGAGGAATGCAAATCTGCAATCATGATGGAAGGTGAGGGCTTGGTCTATTTTTATCTTATTGCTTCTCGTTGCGTGTACGGCCCAGTGTGTGCTGGCTTTAAATGCCATAA
>XR_006251155.1
acacacacacacacaggcggcGGGTGTTTTTGAGACAGTGCGCGAAGCAGAAATCCGAGGAAATGTGGTGATATAACAACAGGTGAAGAGAGAAACTAGTGCAGTCTTGCTGGATCAGCcggtttattttctgtttacatGCTGGTTTACCTCATGGCAACCACAACATGTTTCCTTCAATCCTAGGACCTCAGATTTCAAGAAAGTCATGCAGGAGCGGCACGCTGCACCATAACAAGGCTCCTTGGAGATAGAGGAATGCAAATCTGCAATCATGATGGAAGGTGAGGGCTTGGTCTATTTTTATCTTATTGCTTCTCGTTGCGTGTACGGCCCAGTGTGTGCTGGCTTTAAATGCCATAA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU67011 False 279 lncRNA 0.47 4 14263867 14279026
TU67012 False 282 lncRNA 0.47 4 14263867 14279026
TU67013 False 254 lncRNA 0.46 3 14263867 14279026
XR_006251154.1 False 360 lncRNA 0.46 4 14263789 14279029
XR_006251155.1 True 363 lncRNA 0.47 4 14263789 14279029

Neighbor

gene id symbol gene type direction distance location
ttc4 ttc4,LOC107659046,LOC107738930,LOC107709194,LOC107692369 coding downstream 63046 14197692 ~ 14200743 (-)
lurap1 lurap1,LOC107709195,LOC107590621,LOC107692438,LOC107591165,LOC107659044 coding downstream 73460 14179872 ~ 14190329 (-)
cldn33b LOC107739195,LOC107591162,LOC107659043,LOC107709197,LOC107590677,LOC107692437 coding downstream 135472 14126574 ~ 14128317 (-)
lrrc7 lrrc7,LOC107709201,LOC107692363,LOC107739104 coding downstream 223626 13986047 ~ 14040163 (-)
mrpl47 LOC107659009,LOC107732024,LOC107590634,LOC107709209,LOC107692352,LOC107548661 coding downstream 570963 13691026 ~ 13692826 (-)
pde4ba pde4b,pde4ba,LOC107659050,LOC107692372,LOC108443455,LOC107591166,LOC105913193 coding upstream 6468 14285497 ~ 14402960 (-)
lepr LOC107709190,LOC107738956,LOC107692373,LOC107591169,LOC107659051 coding upstream 135780 14414809 ~ 14450272 (-)
dnajc6 dnajc6,LOC107659052,LOC107692374,LOC107591170,LOC107590617 coding upstream 179960 14458989 ~ 14485480 (-)
ak4 ak4,LOC107590615,LOC107659053,LOC107692375,LOC107591174 coding upstream 206577 14485606 ~ 14492466 (-)
raver2 raver2,LOC107709187,LOC107659056,LOC107556545,LOC107692377,LOC107739056,LOC107591176 coding upstream 244653 14523682 ~ 14583001 (-)
G45271 sgip1,sgip1a,LOC107739126 non-coding downstream 47513 14214638 ~ 14216276 (-)
G45270 LOC107692440 non-coding downstream 50803 14211366 ~ 14212986 (-)
G45225 lrrc40,LOC107590628,LOC107709203 non-coding downstream 281904 13981229 ~ 13981885 (-)
G45206 NA non-coding downstream 291695 13911684 ~ 13972094 (-)
G45198 NA non-coding downstream 402344 13861235 ~ 13861445 (-)
G45277 NA non-coding upstream 214092 14493121 ~ 14494022 (-)
LOC122346442 NA non-coding upstream 372687 14651716 ~ 14656031 (-)
G45355 NA non-coding upstream 626473 14905502 ~ 14905708 (-)
G45532 NA non-coding upstream 823661 15102690 ~ 15154616 (-)
G45543 NA non-coding upstream 906123 15185152 ~ 15239640 (-)
G45257 ttc22,LOC107590622,LOC107692368,LOC107659045,LOC107591163 other downstream 70623 14160475 ~ 14193166 (-)
pex5la pex5la,LOC107709207,LOC107590632,LOC107659033,LOC107692357,LOC107548659,LOC107732026 other downstream 477886 13718202 ~ 13785903 (-)
tmem131 tmem131,LOC107659030,LOC107692350,LOC107732007 other downstream 582495 13655260 ~ 13681294 (-)
LOC122347614 rab6ba,rab6b,LOC107696768,LOC107552273,LOC102207753,LOC100696791,LOC107694122,LOC103354239 other downstream 1366071 12525756 ~ 12897718 (-)
brdt brdt,LOC107678354,LOC107749988,LOC107675431,LOC107730697,LOC107564432 other downstream 3194323 11055035 ~ 11069466 (-)
LOC122347580 ttc4,LOC107738930,LOC107659046,LOC107709194,LOC107692369 other upstream 1048554 15327583 ~ 15330851 (-)
insl5a LOC107692440 other upstream 1210089 15489118 ~ 15490685 (-)
LOC122346545 LOC107582692,LOC107673508,LOC107711046 other upstream 1256357 15535386 ~ 15685485 (-)
G45606 sec61a1,LOC103358725,LOC108436273,LOC108440718,LOC103023094,LOC106518493,LOC102228108 other upstream 1324881 15603910 ~ 15605470 (-)
LOC122347279 LOC107556984,LOC107731622,LOC107692431,LOC107675940,LOC107594634,LOC107717133 other upstream 1477280 15756309 ~ 15765107 (-)

Expression


Co-expression Network