G45312 (pgm1,LOC107704513,LOC107731639,LOC107556550,LOC107692428,LOC107739071,LOC107591179)


Basic Information

Item Value
gene id G45312
gene name pgm1,LOC107704513,LOC107731639,LOC107556550,LOC107692428,LOC107739071,LOC107591179
gene type non-coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056704.1
NCBI id CM032073.1
chromosome length 27473687
location 14766645 ~ 14767982 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>TU67064
ACCAAAGCTTTCTTCACCACAGAGGGATAACTTGCCAGCATCCATCAAGTTTCCAAAGAATTTCCAGCCTGTGGGAGTCTCATAAAGCGGCATCTTTAAAGCTTTGGCTACACTGTatggcaaaaacaaacaatatgtcGCTCTACAGTTTATGAGATGGTGCGTGGTGCACACTTTCTACACCTACTGAGATGGTTAAACACTGAGCTAAatcaaaaaatatacacaagCTTAGATGGTCATACTTGTCCAAAGCCCCGCTGGTGGGCATACTGCGAGCCAGACCCTTTACACCAGTCTTCTGGAAATAAGGGATGGATGTAATGTTGGCACCGATGACTGCCACAGAGTCGGAGGGGTTTACAAAGAATCCATGTTTACCCAAAACCATGTTACGATCACCATCAAAAGCTGCTCCGAAGTCATATTCACCTCCCTTCATAGTGTTGACCAGATCAGCAGCATACGTTAAGTTAGGGTCGGGATGGTGTCCTCCAAAGTCCTCAGAGGGGACACAGTTAACAGCAGAGTTAGCAGGCGAGCCAAGCTCTTCACACACAATCTTCTTCACATAGGGACCCACAACTAGTGTGAAGAACACAAAGAGAGGCAGCTTTCATTTTCAGAGGCCTTACGCACGTTTTTGATGTTGTGAGAGGAATGAAATCCATACCTCCATGCATTGCATCGAGCCGTACATTGATATGATTAGGTCCTGAGAGCAATTCTTTCAGAGCAGCAAAATCAAAGATATCTCTCAGCATCTCTGCATAGGATTCCACCGAGTCCACAATTT

Function

symbol description
pgm1 Predicted to enable phosphoglucomutase activity. Predicted to be involved in carbohydrate metabolic process. Predicted to act upstream of or within glucose metabolic process. Predicted to be active in cytosol. Is expressed in central nervous system; digestive system; myotome; notochord; and yolk syncytial layer. Human ortholog(s) of this gene implicated in congenital disorder of glycosylation It; endometrial cancer; and teratoma. Orthologous to human PGM1 (phosphoglucomutase 1).

NR:

description
PREDICTED: phosphoglucomutase-1-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU67064 True 796 lncRNA 0.45 2 14766645 14767982

Neighbor

gene id symbol gene type direction distance location
LOC122347575 NA coding upstream 54294 14708508 ~ 14712351 (+)
jak1 LOC107659055,LOC107709186,LOC107556544,LOC107739023,LOC107591175,LOC107692376 coding upstream 243329 14495467 ~ 14523316 (+)
ttc22 ttc22,LOC107692368,LOC107590622,LOC107659045,LOC107591163 coding upstream 569326 14192585 ~ 14197319 (+)
wwc3 LOC107590624,LOC107709196,LOC107659042,LOC107738905,LOC107692367 coding upstream 596559 14133341 ~ 14170086 (+)
cldn34a cldn34,cldn34a,LOC107659013,LOC107709183,LOC107590626,LOC107692425,LOC107591192 coding upstream 645463 14117791 ~ 14121182 (+)
LOC122347452 LOC107692384,LOC107739088 coding downstream 12944 14780926 ~ 14790192 (+)
dock7 dock7,LOC107591182 coding downstream 147884 14915866 ~ 14957203 (+)
kank4 kank4,LOC107731645,LOC107704518,LOC107717130,LOC107692389,LOC107556542,LOC107591186 coding downstream 196930 14964912 ~ 15008069 (+)
cyldl LOC107556989,LOC107731632,LOC107704521,LOC107692392,LOC107717142,LOC107594643 coding downstream 380148 15148130 ~ 15154622 (+)
ghrhrb ghrhrb,LOC107704523,LOC107692395,LOC107556991,LOC107731650,LOC107717144 coding downstream 395011 15162993 ~ 15184666 (+)
G45182 NA non-coding upstream 129964 14586502 ~ 14636681 (+)
LOC122346521 NA non-coding upstream 272612 14491806 ~ 14494033 (+)
G45131 NA non-coding upstream 363708 14402508 ~ 14402937 (+)
G45127 pde4b,LOC107659050,LOC107739135,LOC107590663,LOC107591166 non-coding upstream 394551 14371274 ~ 14372094 (+)
G45125 pde4b,LOC107591166,LOC107692372,LOC107659050,LOC108443455,LOC106584037 non-coding upstream 402719 14362347 ~ 14363926 (+)
G45333 foxd3,LOC107717135,LOC107591180,LOC107731647,LOC107692383,LOC107704516 non-coding downstream 37323 14805305 ~ 14813679 (+)
G45364 mafa,mafaa,LOC107717140,LOC107591187,LOC107556987,LOC107731633 non-coding downstream 242264 15010246 ~ 15086529 (+)
G45371 NA non-coding downstream 331855 15099837 ~ 15114651 (+)
LOC122347325 NA non-coding downstream 462839 15230821 ~ 15231746 (+)
LOC122347324 NA non-coding downstream 463842 15231824 ~ 15233054 (+)
meltf mfi2,LOC107692364,LOC107709202,LOC107659038,LOC107591189,LOC107739178,LOC107590629 other upstream 786359 13972173 ~ 13980286 (+)
G44887 NA other upstream 1356733 13394229 ~ 13409912 (+)
G44645 NA other upstream 1657279 13108735 ~ 13109366 (+)
smx5 lsm2,LSM2,smx5 other upstream 1684526 13080565 ~ 13082119 (+)
crocc2 crocc2,LOC107593190,LOC107753661,LOC107694109,LOC107752664,LOC107552261,LOC107696746 other upstream 1960945 12765821 ~ 12805700 (+)
pomgnt1 pomgnt1,LOC107675946,LOC107692396 other downstream 468183 15236165 ~ 15244280 (+)
G45419 sgip1,sgip1a,LOC107739126 other downstream 590879 15358861 ~ 15459386 (+)
G45448 LOC107585177,LOC107673508,LOC107711046,LOC107748403,LOC107582692 other downstream 796999 15564981 ~ 15566668 (+)
G45894 NA other downstream 2418726 17186708 ~ 17187308 (+)
G46022 NA other downstream 3227209 17995191 ~ 17996717 (+)

Expression


Co-expression Network