G45333 (foxd3,LOC107717135,LOC107591180,LOC107731647,LOC107692383,LOC107704516)


Basic Information

Item Value
gene id G45333
gene name foxd3,LOC107717135,LOC107591180,LOC107731647,LOC107692383,LOC107704516
gene type non-coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056704.1
NCBI id CM032073.1
chromosome length 27473687
location 14805305 ~ 14813679 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>TU67090
tgttttcatatttattaacaaatgaaGTTGATTTACAACACAATATAGCTACAtagaatacatatatttaaattttataaacataCTTCTTCAGTCTTTCAATAAGAacagtttaatatttcatattggaaaacaaaggggggaaaaaaacattcttctcGAAATCAATTCTttgagaataaaaacaaaatattacgGGAAAGTAAGGCTCACTCAGCTATCAGTTTAAACAACGAAATGaaacaggaaagaaaaacatgtaaattaatttctttgtacaaatatttacaaacattacCTGTACTGAAAGCATTCCTTTTTGAttatgaattttcttttttttttttttcaaaagtcttTACATGGCTACATTGGGGCGGACGGATCGTCCAGTGCTGCCTATAGTTCGTGCTGTATcgtctttaaaatatatatgtctaaaaaaaatagtttgattaTCATTGAGAAGGCCATTTAGACACCGCCGCCGTGGACGCTGTCGGTAAAAATTGTCCGGAGATGATATTTGACGGGACGCTGAGAATGGGCGCGATGGCGGCTGACGTCCGGGACAGGGACAGGGACTGCGCGCTCAGTAAGGCGGACTGCACCGTCACGGGCGGCCGCAGGAAAGTCTGCGCGCTCGTGGAGCTACTGGAGACCCCGATAATGTTCTCTATGCTGAACGACGGCCGACTGGACGGCTCGGATTTGATGATTGACGCCGTGCTCAGGCTGTTCAGCTGCAGCTGGAGACTCGGGCTCAGTTGAGAGTTAAATGCTTTTCTGTTCAGTTCCGCGGAGGGCAGGAGAGGCACCGCGGGAGGCAGCATCGGACCCACCGGGGGAATGTACGGGTACTGCAAAGCGGCGGCGGGGTGCGTGTAAGCGGCAGGGTGAATTCCGTAGTGGCGTCCGTAGGGATTCCCAATGCTGTACGCCCCAAAGCTCTGCATCATGAGGGCGGTCTGGTCCCTGAGAATGTCCGGCTGGTGTCTCTTGAAGCGTTTCCTCCTCCTCAGAAAGCTGCCGTTGTCGAACATATCTTCCGACTGGGGGTCGAGGGTCCAGTAGTTGCCCTTGCCCGGGTTGCCCGGTTCCCGTGGGATCTTGACAAAGCAGTCGTTGAGGGACAAGTTGTGGCGAATGGAGTTTTGCCAGGCCGGGAACTTCTCTCGGTAGTACGGGAAGCGGTTGCTGATGAACTCGCAGATTCCGCTGAGAGTCAGCTTCTTCTGCGGGCTCTGGAGGATGGCCATGGTGATGAGGGCGATGTAGGAGTAGGGCGGCTTCACCAGGCTGTTCTTGGGCTTGCTTTGCATGGAGCCGGTGGAGCTCTCCTGAGCGTCCCCCTTTGACTCCCCCTCGCCGGCGCTCTCGCACGGGCTGTCGCTGTGCTCCTTCACCTCGATCTCCTCCACCTCATCTCCCCGGTCCTGCATGCACTGGCTCTCGCAGTCGCTGTCCCGCTCCATCCCCTCGTCGCCCTCCCCGACCACGTCGATATCCACATCGTCAGCTGTGAGCACGGTCTGACCGGACATGTTGCTGGCGCTGGTGCCTCCAGACAGGGTCATCACCGCTCACTTTACCGCTGGAGCAAACCAAGCTGGAAGCAGAATTAACCTGCACgtggaTGAAAACTGTATGGAACAGACTGctaatgttaaatgaaaatacttcACTGGCAGCTCATGGCACCAACAACACTGGACTGATTCACTGTTATGTGCCATCTGTTGGCCAAAAtgggaaataataaaaaaaaatgatcaaaaaataaaacatagaaacCGCTGAATGAAGGATCTGTA
>TU67092
tttttttttttggcgctAAGCATATTTAGGAAGTTCATTAAATAGGGGTTGCGTAATATTTTCAGCGcgcttgtttttgttgcatgACATTTAATCTGCAAATAGGCCACCACCTTTCACCTCGACCTTTACCTTTAGCCTGCTCACCGTCCTAACAATTCTCCGAGGAACGCTTGCTCGCGCTACATCTTTGAAGCTGTTTTTGCGTGGATGAGATTAATTGAACCACGTTGCTATTAATGGTATTGAATAGTTCAAGCAGACTGTGGCCCCGTGTGATGTCCCGTTTATCAATACGGGCCACTTAGAGGATGAAGTCGAAGCGCCTTTAACGCCGCctaaagtaaatatttactTTCGAAAATATTTTCTGCCCAACGCGCGCATTCGTTTAATAATTTCTACGCGTCTTTGTTACTCCAGTAGATATTCTTTAGGAGCGTTATAGGAGTCTACTCGAACGATATTTCCGCAGCCTCCAAACGTGTGCTGGTTTATTGCTTTAGGTCGTGCCgttgtttaattataaatacaaacgcaCGCGCGCAGGCGGGTTATTCGCGTGCGTTTTGGCGCTGCGTGTTGCAGAATGATGGAGGGTTTTGTCAGGggcttaaaatgtaaaagaccATATATCTCGAGTCAGTGCGCGCTGAAAGACATCGCGGGTGATATCGCCCAAAATGAGATCAAATTCGTCCTCTCTGTGAtcttttgaagctccataaatccgGCTTTATACCTTCGCAGTTTGTTaatgaaatgtacatttaagcACACATGCACGGCTTAACCCGACAAAACCTTTTAGAATAATAAGCTAACTCTTTCCAGCATGAACCTATTAGGGGACGCAGGCATAGCAGGTGACGGTGCGGATACAGTGGCTGAATGTGATTACCCAGCAAGGTCAGAAACAAATAGCTCACAAATAGCAAAGCAGGATCGAATTTATGCCTAATTAAATCGCTGAAATAAAAGAGATAGAAGGGAAAATTGAAGGGCGTAATGGGAAATGTGTCCATTCAGGGGAAGAGGGGGTCTTGCAGAAGAAAGGATGCAACCCAGATGAAAACTGAACTTGAATAGGAGGATGCTTTGCATTTGAAGGGTATATTAAAGCTGCACGGACTTCGATAAAACAGATAGGCCACCCAACACGTTAATGAATGGGCCTTCgcaatatgttattaatttctcgttaatattgtttttaatccttttagttttttcttgttttttttttttttttttttttttgtgtgtaagaCGTCTGTCATCAGCACTAGAGTCGTGCTTTATCCGAATCGACAGCCCCTCAGCAAACCGTTAACCGTGATGCATATTTCTATATCGGTATTAAAGAGTCTGCCCTTCGTTGCGATCGAATATATTTCGCAAGCGTCGCATCTTTTGCGAAATCGGTCTTGtagaaacgagtcgtttttattATGTAAGCAGGGTTGGGGGGCAAGCTCGTGCAACTGTGATAAATGAATGGCTTTGTTAGCGCGCTTTTAATTACGGTTATTGTGCCAATTATTTTACATCAACTCCGCATTATCAGCACgtcagatttaataaaaaggaGCCATTTGCGGGAAAACCGTTCCTCTCATCTAGAAAGGGAAGTGTCCACGTCACACTCTggttaaaaaatgacttttcatttaaatgcaatccTTAATTGGATTTTCTACGGTCGACACCGTGATTCCCCAAGGCTATACCCACCAGAAGGCAGGATCTCCGTTTTTCTCTCTGAATTCACCATTTTCACCCTCTTGAAGAATCCACTCTATCAACCTGCAACTTTCTGTCAAACAATATGATCCAGCTCATTTTTAACAGTCCCCTTTGTAGTATCATCCTGCAGGCTCGTACCATTACAGCCAAAGCAGAAAATCAGCGTTACGCTCCGCAAACTCGGTTGAACATAACATAATTCCGCAGGTAGGCCCATACAAAATAGCGCACGACAACGGTATCAAAACAGTGttggaaaaataataaacgAATACCTGATTTAAGACATCACCCCCGAATAAAAAAGGAGGGCTgtgcttttgaaaatgaacgtgcgattattgttattattttatattcacgATCTGTTTGCATTTTACACAGAGTTGCTGTGTGAACTGTGTCatgcaaaatgtttcattttctcttttaaatgcatttcccACACAAAGCACAGAGCTCTGTCAAATGTCTCAATGAATGTATCCTGTAATGaataatgcttgttttttttttgtgctgtgaTTTTTCTCTTTCCGTATAGCTGGAAGCAGAATTAACCTGCACGTAAGTAACTGCCACAAAATGCTAACTCATCTTCTCAAACCTAACCGatgaattaattgttaaaaaaaagacccAACTGGAATAAAACCTTACATTTCTGCTAGTTCGTGGCTTCATATTGGTACGAAGCATTTAATAATCAAGCATTGGCTGTGCATTCAAGAATGAAACCTTTGTGAACGTAGCATATATTTAATCTCACTTTACGAAATGCTCTTTTAATATTGCCTTATGTTTGATGTGGTTGTATGTGGTCCACGATGTCGAGGACGGGTGCAAAAACGACGCCTCCAGCCAGATTAACATGCCAAAGCGCGTAGTTAAGCATGTGTGATGTTACTCGGTTTGTACGTTCAATTGTTATTTAGATGAAGACTGAAGTAGCACATTATCACGACGAGAGGGTGTTATTTGGGTTTTGTCTTAACTTACTAACACGAACTTCCTGCGTAATGCAAGTTCATCCAGCATCTCTTTTATACACGTCTAGATTCTTTTGATAAGAAGCGTTCTGCTGAGGGAACATTAAACAGGATGCGCCTTACGCGTTCTCAGTCGCCATGGATACACTGACGCTATCTTTTTATATGGGGTAGATATAACGCCTAGCTAGGGGTTTAACGTCAACGTAAAGGGTTTAAAATGAGTTTCATCGCTGCACTCACTTTCTACCGCCTTCTCCATTTCTAGTAAACATGATCAAATCGTCACATTATTTATTCGGAATACCGTAAACCGTTTACAATCAGGCCATTAATTCGGCCACTATTCCGTTTAACTCAGATtgaagtcaaataaaatgtgcGATGAACTCATCACCGCAGGACGTCACTTTTCCACCGGTTTggatttatcttttattttcagtcaaatttgtattttgtaaaataatgtattccTGTTCATTCGTTTGTAAATGTACACGCGCTCAATTTGGTACATTTCCTTAAAACGAATGTCGTCTTGATGTCGTTCTCACAAACAtggctattttttattttttattttgatgacatCGTGAATTGTATCATTTCCAGATTGACGAATTATTAAAATGGGTTGCAAACCGCATGGTTGTCGTGTATTATGATGTTCACCGAACACTGTGTCTCCAACACGAATAAAGAGAGAGTCGATACAATCAATGGCTTCAATTCATTAAGTCCACTCAAGTTTATGTCTTAGGTGGGCTATGGCCCTTGTCATCAGCTAATAATTCTTCCATTCGAGTCTCACAACTTCTCTCTTCAACAAATGCCTCCGGCTATAAATACTAATGAAATATCTTTGGCTAATTTGATTTTGCTGGTACACTTGCAGTTATGGCTGAACTTTCCCACGAGACGAGCTGATTGAAGGGTCTCAGATCCTATAACGGAAGGGGGAAAACATTCAGAGCATTTCCATAATTACCCAATTGGCAGCCTAATGACCTTCCAGGACAATAAAAAGATCTCTTGTTAATTCCATCTTTCATGCTGACGTTCACTAGATCCCTATCTTATATGTTGAGAGTTCACAAGATAACAAGTgt

Function

symbol description
foxd3 Enables DNA-binding transcription factor activity and sequence-specific DNA binding activity. Acts upstream of or within several processes, including iridophore differentiation; negative regulation of macromolecule metabolic process; and nervous system development. Predicted to be located in nucleus. Is expressed in several structures, including mesoderm; nervous system; neural crest; neural keel; and neural plate. Human ortholog(s) of this gene implicated in vitiligo. Orthologous to human FOXD3 (forkhead box D3).

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU67090 False 1814 lncRNA 0.50 3 14805305 14813679
TU67092 True 3847 lncRNA 0.40 2 14808335 14812557

Neighbor

gene id symbol gene type direction distance location
LOC122347452 LOC107692384,LOC107739088 coding upstream 15113 14780926 ~ 14790192 (+)
LOC122347575 NA coding upstream 92954 14708508 ~ 14712351 (+)
jak1 LOC107659055,LOC107709186,LOC107556544,LOC107739023,LOC107591175,LOC107692376 coding upstream 281989 14495467 ~ 14523316 (+)
ttc22 ttc22,LOC107692368,LOC107590622,LOC107659045,LOC107591163 coding upstream 607986 14192585 ~ 14197319 (+)
wwc3 LOC107590624,LOC107709196,LOC107659042,LOC107738905,LOC107692367 coding upstream 635219 14133341 ~ 14170086 (+)
dock7 dock7,LOC107591182 coding downstream 102187 14915866 ~ 14957203 (+)
kank4 kank4,LOC107731645,LOC107704518,LOC107717130,LOC107692389,LOC107556542,LOC107591186 coding downstream 151233 14964912 ~ 15008069 (+)
cyldl LOC107556989,LOC107731632,LOC107704521,LOC107692392,LOC107717142,LOC107594643 coding downstream 334451 15148130 ~ 15154622 (+)
ghrhrb ghrhrb,LOC107704523,LOC107692395,LOC107556991,LOC107731650,LOC107717144 coding downstream 349314 15162993 ~ 15184666 (+)
LOC122346435 wdr78,LOC107590676 coding downstream 520351 15334030 ~ 15340136 (+)
G45312 pgm1,LOC107704513,LOC107731639,LOC107556550,LOC107692428,LOC107739071,LOC107591179 non-coding upstream 37323 14766645 ~ 14767982 (+)
G45182 NA non-coding upstream 168624 14586502 ~ 14636681 (+)
LOC122346521 NA non-coding upstream 311272 14491806 ~ 14494033 (+)
G45131 NA non-coding upstream 402368 14402508 ~ 14402937 (+)
G45127 pde4b,LOC107659050,LOC107739135,LOC107590663,LOC107591166 non-coding upstream 433211 14371274 ~ 14372094 (+)
G45364 mafa,mafaa,LOC107717140,LOC107591187,LOC107556987,LOC107731633 non-coding downstream 196567 15010246 ~ 15086529 (+)
G45371 NA non-coding downstream 286158 15099837 ~ 15114651 (+)
LOC122347325 NA non-coding downstream 417142 15230821 ~ 15231746 (+)
LOC122347324 NA non-coding downstream 418145 15231824 ~ 15233054 (+)
G45400 NA non-coding downstream 461936 15275615 ~ 15344414 (+)
meltf mfi2,LOC107692364,LOC107709202,LOC107659038,LOC107591189,LOC107739178,LOC107590629 other upstream 825019 13972173 ~ 13980286 (+)
G44887 NA other upstream 1395393 13394229 ~ 13409912 (+)
G44645 NA other upstream 1695939 13108735 ~ 13109366 (+)
smx5 lsm2,LSM2,smx5 other upstream 1723186 13080565 ~ 13082119 (+)
crocc2 crocc2,LOC107593190,LOC107753661,LOC107694109,LOC107752664,LOC107552261,LOC107696746 other upstream 1999605 12765821 ~ 12805700 (+)
pomgnt1 pomgnt1,LOC107675946,LOC107692396 other downstream 422486 15236165 ~ 15244280 (+)
G45419 sgip1,sgip1a,LOC107739126 other downstream 545182 15358861 ~ 15459386 (+)
G45448 LOC107585177,LOC107673508,LOC107711046,LOC107748403,LOC107582692 other downstream 751302 15564981 ~ 15566668 (+)
G45894 NA other downstream 2373029 17186708 ~ 17187308 (+)
G46022 NA other downstream 3181512 17995191 ~ 17996717 (+)

Expression


Co-expression Network