G45371


Basic Information

Item Value
gene id G45371
gene name NA
gene type non-coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056704.1
NCBI id CM032073.1
chromosome length 27473687
location 15099837 ~ 15114651 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>TU67160
TTGTGTGATCTCAATATGGATACATCCACAGGTGCCCAATTCCATGAGAAATTCAATTGTTCAATTATTTTGCTAAAAACATGACTGTTTTTTCTTCACATGAAATCAACTGATGAACCGGACTGGAGTTGTCAATTACTCGAAGATTATATTTTTTCAGCCGTTTggactgacggcacccattcacaggaTCCTTTGTTCAGCAAGTGATgctaaatttcttcaaatcCAAATCTTGGACGGCCTGATGGATGGGTGGATGAGATGAATGGAGAGGTGGTGAAGAGGGGAGCAGTGCTGCAGCATATCCTGTGCTGATCAATACAAGAGCACTAAACCTGATGAGGGCCACGCGGGCCGCTCCACCCACACAGAGAGAGTGCATGACCCATGCGATGTGAGGTGAATgaccaaaagaaaataaaagACACAGGCGCACTGCTGACTACACACTCCCACCGCTCCAGCTCGCTGCGCCGGACGCCGGGTCACTGCACGGAAGGGTGAGGGGCTAAAGAGCCCCGCGTCTGTCTGCTCAAGTGTGAGACGGAGAGGGGCTCTGCGCTTCTTCTGCTTGAGCTCTTGGGTGGTGGACTGTGATCggc
>TU67161
TTGTGTGATCTCAATATGGATACATCCACAGGTGCCCAATTCCATGAGAAATTCAATTGTTCAATTATTTTGCTAAAAACATGACTGTTTTTTCTTCACATGAAATCAACTGATGAACCGGACTGGAGTTGTCAATTACTCGAAGATTATATTTTTTCAGCCGTTTggactgacggcacccattcacaggaTCCTTTGTTCAGCAAGTGATgctaaatttcttcaaatcCAAATCTTGGACGGCCTGATGGATGGGTGGATGAGATGAATGGAGAGGTGGTGAAGAGGGGAGCAGTGCTGCAGCATATCCTGTGCTGATCAATACAAGAGCACTAAACCTGATGAGGGCCACGCGGGCCGCTCCACCCACACAGAGAGAGTGCATGACCCATGCGATGTGAGGTGAATgaccaaaagaaaataaaaggtgaagatcatgattgtttttttgttgtttctcagACATGAACAGTGTTAGAGTTCAAGGAAACAGATGCAAGAAATCTGGATTCATATTCAGTACTACCAGAGtaaatgtatgaatgtgtgtcctaaaataaaagctagag

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU67160 True 605 lncRNA 0.50 3 15099837 15114651
TU67161 False 569 lncRNA 0.41 2 15099837 15113300

Neighbor

gene id symbol gene type direction distance location
kank4 kank4,LOC107731645,LOC107704518,LOC107717130,LOC107692389,LOC107556542,LOC107591186 coding upstream 91768 14964912 ~ 15008069 (+)
dock7 dock7,LOC107591182 coding upstream 142634 14915866 ~ 14957203 (+)
LOC122347452 LOC107692384,LOC107739088 coding upstream 309645 14780926 ~ 14790192 (+)
LOC122347575 NA coding upstream 387486 14708508 ~ 14712351 (+)
jak1 LOC107659055,LOC107709186,LOC107556544,LOC107739023,LOC107591175,LOC107692376 coding upstream 576521 14495467 ~ 14523316 (+)
cyldl LOC107556989,LOC107731632,LOC107704521,LOC107692392,LOC107717142,LOC107594643 coding downstream 33479 15148130 ~ 15154622 (+)
ghrhrb ghrhrb,LOC107704523,LOC107692395,LOC107556991,LOC107731650,LOC107717144 coding downstream 48342 15162993 ~ 15184666 (+)
LOC122346435 wdr78,LOC107590676 coding downstream 219379 15334030 ~ 15340136 (+)
pfkfb4b pfkfb4b,LOC107711047,LOC107673509,LOC107748389,LOC107585116,LOC108440764,LOC103024058 coding downstream 531369 15646020 ~ 15657188 (+)
LOC122347276 sumf1,LOC107673603,LOC107585117,LOC107667304 coding downstream 568915 15683566 ~ 15691034 (+)
G45364 mafa,mafaa,LOC107717140,LOC107591187,LOC107556987,LOC107731633 non-coding upstream 13308 15010246 ~ 15086529 (+)
G45333 foxd3,LOC107717135,LOC107591180,LOC107731647,LOC107692383,LOC107704516 non-coding upstream 286158 14805305 ~ 14813679 (+)
G45312 pgm1,LOC107704513,LOC107731639,LOC107556550,LOC107692428,LOC107739071,LOC107591179 non-coding upstream 331855 14766645 ~ 14767982 (+)
G45182 NA non-coding upstream 463156 14586502 ~ 14636681 (+)
LOC122346521 NA non-coding upstream 605804 14491806 ~ 14494033 (+)
LOC122347325 NA non-coding downstream 116170 15230821 ~ 15231746 (+)
LOC122347324 NA non-coding downstream 117173 15231824 ~ 15233054 (+)
G45400 NA non-coding downstream 160964 15275615 ~ 15344414 (+)
LOC122346981 NA non-coding downstream 347311 15461962 ~ 15462420 (+)
G45421 NA non-coding downstream 371723 15486374 ~ 15487892 (+)
meltf mfi2,LOC107692364,LOC107709202,LOC107659038,LOC107591189,LOC107739178,LOC107590629 other upstream 1119551 13972173 ~ 13980286 (+)
G44887 NA other upstream 1689925 13394229 ~ 13409912 (+)
G44645 NA other upstream 1990471 13108735 ~ 13109366 (+)
smx5 lsm2,LSM2,smx5 other upstream 2017718 13080565 ~ 13082119 (+)
crocc2 crocc2,LOC107593190,LOC107753661,LOC107694109,LOC107752664,LOC107552261,LOC107696746 other upstream 2294137 12765821 ~ 12805700 (+)
pomgnt1 pomgnt1,LOC107675946,LOC107692396 other downstream 121514 15236165 ~ 15244280 (+)
G45419 sgip1,sgip1a,LOC107739126 other downstream 244210 15358861 ~ 15459386 (+)
G45448 LOC107585177,LOC107673508,LOC107711046,LOC107748403,LOC107582692 other downstream 450330 15564981 ~ 15566668 (+)
G45894 NA other downstream 2072057 17186708 ~ 17187308 (+)
G46022 NA other downstream 2880540 17995191 ~ 17996717 (+)

Expression


Co-expression Network