pomgnt1 (pomgnt1,LOC107675946,LOC107692396)


Basic Information

Item Value
gene id pomgnt1
gene name pomgnt1,LOC107675946,LOC107692396
gene type misc
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056704.1
NCBI id CM032073.1
chromosome length 27473687
location 15236165 ~ 15244280 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>TU67192
ACTCATTACCTGCATATGGCCAAGCGCTACTAGACCCGACCTAAACTAAATTACAGTTATATTTTCTGGAGAGTCGGGACGTCGTTTCCGTGCAACATAAAATGCTGCTGAGATGAAGAAGACGTGATCCCAGGCGTTGTCGGATGCAGGCAGGTCTTGTGATCGGGAGCAGCGGGCAGGACTGCAGGAATGGACACCTGGACACCCAACCCGAGAGCCAAACCCTTCATCCCCCGCCAGCAGCGCAGCCTCTACCTCACCTGGAAATACAGACTcaccaacaaaagagcagtgCGGCGGATCTGCCAGGCCAGTGCTGTCCTCTTTCTACTGATCACAGTGATTGTCAATATCAAACTCATTCTTGACACGAGGAGAGTTGCCAGTGAGGACGATGCTGTTCAAGAGTATGATGACGTCCTGCCTAACATGGAAACCCCGCGCAGACCAGCGAGTGGGAGAAAGGTTTTGGATATCGAGGTGTATTCTAGTCGATCTAAGGTTTATGTAGCAGTGGATGGCACCACTGTTCTGGAAGATGAGATGAGGGAGCAGGGCCGAGGCGTGCATGTTATAGTTTTAAATCAGGCAACTGGTCATGTCATGGCCAAAAGAGTGTTCGATACTTATTCTCCCCATGAGGATGAAGCCATGATCCTCTTCCTCA
>XM_043240997.1
ttgaaaaaagagcGTGCGGCTTCGTCCTGCAATCTGGCTTCACACTACTCATTACCTGCATATGGCCAAGCGCTACTAGACCCGACCTAAACTAAATTACAGTTATATTTTCTGGAGAGTCGGGACGTCGTTTCCGTGCAACATAAAATGCTGCTGAGATGAAGAAGACGTGATCCCAGGCGTTGTCGGATGCAGGCAGGTCTTGTGATCGGGAGCAGCGGGCAGGACTGCAGGAATGGACACCTGGACACCCAACCCGAGAGCCAAACCCTTCATCCCCCGCCAGCAGCGCAGCCTCTACCTCACCTGGAAATACAGACTcaccaacaaaagagcagtgCGGCGGATCTGCCAGGCCAGTGCTGTCCTCTTTCTACTGATCACAGTGATTGTCAATATCAAACTCATTCTTGACACGAGGAGAGTTGCCAGTGAGGACGATGCTGTTCAAGAGTATGATGACGTCCTGCCTAACATGGAAACCCCGCGCAGACCAGCGAGTGGGAGAAAGGTTTTGGATATCGAGGTGTATTCTAGTCGATCTAAGGTTTATGTAGCAGTGGATGGCACCACTGTTCTGGAAGATGAGATGAGGGAGCAGGGCCGAGGCGTGCATGTTATAGTTTTAAATCAGGCAACTGGTCATGTCATGGCCAAAAGAGTGTTCGATACTTATTCTCCCCATGAGGATGAAGCCATGATCCTCTTCCTCAACATGGTCACACGTGGAAGAATCCTCATCTTTACTATTAAGGATGAGGCTTTCCACTTGAAGGATGCAGCAAAGAATCTTCTGAAAGGTTTGGGGAGTCAGGTAGCTGTCACTTTAGGTTGGAGAGATATGTGGACTCTGGTTGTAAGAAGGGAGGTGTATGGGGAGAAGCACTCCAAGTCTCCTGCTCTGTCCACATGGGGTGATCCTGTGCTGCTGAAGACTGAGGTCCAGCTGACAGCTTCTGAAGAGGCAGAGTGCCATTGGGCAGACACCGAGCTGACGCGGAGAAAACTCTTTTGCAGTAAAGTGGAAGGATATGGAAGCATTTGTAGTTGCAAAGACCGCCCCATAGAGTTTAACCCAGACCCACTGCCTAGCAACAAAGTCTACAACGTCCCAGTAGCAGTTATAGCTGGAAATAGACCAAACTATCTCTACAGAATGCTGCGCTCTCTTCTTATATCCCATGGTGTCAATCCACAGATGATCACTGTTTTCATCGATGGCTACTATGAGGAACCcatggatgtggtggatctctTCGGTCTTAAAGGAGTTCAACATACCCCTATCAGTATTAAGAATGCTAGAGTGTCACAGCACTACAAAGCCAGCTTGACTGCAACCTTCAGTCTGCACccaGATGCAGATTTTGCCATTGTCTTGGAGGAAGACCTGGATATTTCCATAGATTTTTTCAGCTTTCTCAGCCAGACTATCCATTTGTTGCGTGAGGATGACAGTCTGTACTGTATCTCAGCCTGGAATGACCAAGGCTATGAGCACACCGCAGAGGACCCGTCTCTGTTGTACAGAGTGGAGAGTATGCCCGGCCTTGGCTGGGTGCTTAAAAAAAGCCTTTACAAGGATGAACTAGAGCCCAAATGGCCAACTCCTGAGAAGCTATGGGACTGGGACATGTGGATGCGGATGCCAGAACAGAGGAAGGGGAGAGAATGTGTCATTCCTGATGTCTCCCGCTCTTATCACTTTGGCATCATTGGGTTAAATATGAATGGTTACTTCCATgaagtttactttaaaaagcacaaGTTCAACACTATTCCGAATGTTCAGATGAGAAATGTAGATAGCTTGAAGAAAGATGCATATGAGATCGAAATCCAAAACCTGCTACGTGAGGCTGAGGTCCTGGACCACAGTAAAAACCCATGCGAAGACTCATTTATCCCAGACACAGAGGGAAAGACCTTTGTAATGTTCATTAAAATGGAGCAAGAGACGGATACAAACACTTGGACGGAACTGGCGAAGTGCCTGCATGTATGGGACCTGGATGTACGAGGTTATCACAAAGGACTCTGGAGGCTCTTCAGAAAGAAGAACCACGTATTAGTGGTGGCTGTTCCAATCTCACCATACTCTGTTAAGAAGCCCAATAACGTCACTCCCATTCACTTGGAGCCAGCACCTAAAGAGGAGGGACCTCCTGTGGAACAGATTTAGAGCAGTTTTAATCCCACCCAAAGGGCCTTTCCTAACCACTAACAGACAAGGCCCATGTCATGCGGATAATGGGCCTTGTGTTCTTCAGGCCGTTGCAAGACAAAGGGGATAGGATGAACCTGACTGAACCGTCCTGTGCTGGTGCCCTCTAGGAACTGCAGGCTTTTTAAACTAGAATGATAATAGTGTGGATTTCTTAAATGGCGTGTGGAGTGACCTTCTTGTTTTGTTGGTATGCATTTTACAGTGGGAGCTTCTCCTGGGGTCGTGAAATTTCATATGTGTTTATGCTGGAAGGTTTGACATTAGAAACGAATTGATGGATGTTTTAAAGTATTACTGGTACTATGATAGAAACCAGTGCTGGTTTTAGTTACTGAATTGTGACAACAGTTAATGTCAAACCAGGACACTCCGAAAAAGGGATTAGGAGGGTACAGAAGACataagatactttttttttttttaacactactGAGTGCTTTGGGCCGTCCTGCACATGCGTTTTAACTTAtgtctatttattttgtcaatattaaGATAACtaggtttatttttacttaatggATTCACTTTTA

Function

symbol description
pomgnt1 Predicted to enable beta-1,3-galactosyl-O-glycosyl-glycoprotein beta-1,3-N-acetylglucosaminyltransferase activity. Predicted to be involved in O-glycan processing. Predicted to act upstream of or within protein glycosylation. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be integral component of Golgi membrane. Is expressed in several structures, including axis; fin bud; myotome; nervous system; and shield. Human ortholog(s) of this gene implicated in lissencephaly; muscular dystrophy (multiple); and retinitis pigmentosa. Orthologous to human POMGNT1 (protein O-linked mannose N-acetylglucosaminyltransferase 1 (beta 1,2-)).

NR:

description
PREDICTED: protein O-linked-mannose beta-1,2-N-acetylglucosaminyltransferase 1-like isoform X1

GO:

id name namespace
GO:0006486 protein glycosylation biological_process
GO:0000139 Golgi membrane cellular_component
GO:0008375 acetylglucosaminyltransferase activity molecular_function

KEGG:

id description
K09666 POMGNT1; beta-1,2-N-acetylglucosaminyltransferase

RNA

RNA id representative length rna type GC content exon number start site end site
TU67192 False 667 TUCP 0.51 6 15236211 15238200
XM_043240997.1 True 2760 mRNA 0.46 26 15236165 15244280

Neighbor

gene id symbol gene type direction distance location
ghrhrb ghrhrb,LOC107704523,LOC107692395,LOC107556991,LOC107731650,LOC107717144 coding upstream 51499 15162993 ~ 15184666 (+)
cyldl LOC107556989,LOC107731632,LOC107704521,LOC107692392,LOC107717142,LOC107594643 coding upstream 81543 15148130 ~ 15154622 (+)
kank4 kank4,LOC107731645,LOC107704518,LOC107717130,LOC107692389,LOC107556542,LOC107591186 coding upstream 228096 14964912 ~ 15008069 (+)
dock7 dock7,LOC107591182 coding upstream 278962 14915866 ~ 14957203 (+)
LOC122347452 LOC107692384,LOC107739088 coding upstream 445973 14780926 ~ 14790192 (+)
LOC122346435 wdr78,LOC107590676 coding downstream 89750 15334030 ~ 15340136 (+)
pfkfb4b pfkfb4b,LOC107711047,LOC107673509,LOC107748389,LOC107585116,LOC108440764,LOC103024058 coding downstream 401740 15646020 ~ 15657188 (+)
LOC122347276 sumf1,LOC107673603,LOC107585117,LOC107667304 coding downstream 439286 15683566 ~ 15691034 (+)
LOC122347482 tsfm,LOC107711018,LOC107585120 coding downstream 451346 15695626 ~ 15697839 (+)
LOC122346397 pomgnt1,LOC107675946,LOC107692396 coding downstream 501794 15746074 ~ 15753735 (+)
LOC122347324 NA non-coding upstream 3111 15231824 ~ 15233054 (+)
LOC122347325 NA non-coding upstream 4419 15230821 ~ 15231746 (+)
G45371 NA non-coding upstream 121514 15099837 ~ 15114651 (+)
G45364 mafa,mafaa,LOC107717140,LOC107591187,LOC107556987,LOC107731633 non-coding upstream 149636 15010246 ~ 15086529 (+)
G45333 foxd3,LOC107717135,LOC107591180,LOC107731647,LOC107692383,LOC107704516 non-coding upstream 422486 14805305 ~ 14813679 (+)
G45400 NA non-coding downstream 31335 15275615 ~ 15344414 (+)
LOC122346981 NA non-coding downstream 217682 15461962 ~ 15462420 (+)
G45421 NA non-coding downstream 242094 15486374 ~ 15487892 (+)
G45447 NA non-coding downstream 266460 15510740 ~ 15577035 (+)
G45456 NA non-coding downstream 335982 15580262 ~ 15583406 (+)
meltf mfi2,LOC107692364,LOC107709202,LOC107659038,LOC107591189,LOC107739178,LOC107590629 other upstream 1255879 13972173 ~ 13980286 (+)
G44887 NA other upstream 1826253 13394229 ~ 13409912 (+)
G44645 NA other upstream 2126799 13108735 ~ 13109366 (+)
smx5 lsm2,LSM2,smx5 other upstream 2154046 13080565 ~ 13082119 (+)
crocc2 crocc2,LOC107593190,LOC107753661,LOC107694109,LOC107752664,LOC107552261,LOC107696746 other upstream 2430465 12765821 ~ 12805700 (+)
G45419 sgip1,sgip1a,LOC107739126 other downstream 114581 15358861 ~ 15459386 (+)
G45448 LOC107585177,LOC107673508,LOC107711046,LOC107748403,LOC107582692 other downstream 320701 15564981 ~ 15566668 (+)
G45894 NA other downstream 1942428 17186708 ~ 17187308 (+)
G46022 NA other downstream 2750911 17995191 ~ 17996717 (+)
tubgcp5 tubgcp5,LOC107585157,LOC107673606,LOC107582726,LOC107753407,LOC107685296 other downstream 2912375 18156655 ~ 18166242 (+)

Expression


Co-expression Network