G45419 (sgip1,sgip1a,LOC107739126)


Basic Information

Item Value
gene id G45419
gene name sgip1,sgip1a,LOC107739126
gene type unknown
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056704.1
NCBI id CM032073.1
chromosome length 27473687
location 15358861 ~ 15459386 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>TU67233
ACTTTCATTTCCACTTGTTGCAGCTGGAGGTATGGGCCCTGGGGATGACACCACCGCCCTATATGtgggaggtggaggaggaggaggtgttgAGCGCAGTCCTTGACTGATCTCTTTGGGTGAAGCGCTGCTCTCACTTGGGTCCTCTTTTGATGGGGTCTCCTCAGGGCTCTTCTTGTCCTCTTGGTTCAGAACCAAGGGTGGAGGGATTGTGCGTTCACTTGTCTCTACAGTGGTTGGAGGGCTGTTGGTCGAGTCTGATTGGGACTCACATGCCGCAAAGTCTGTTTTGGAGTAAGAAAGATCATCTGGTTTCGGGGGTGGTGGGGCCTCTTCAATCGGAGGAGGAGGGACAGTTGGGGGAGAAGGAGTGGTGTCTTTGGGAACAGGTGGGACAGGAGGGAGGCTATCCTTTGGTGACTCAATGGAAGGAGGAGAAGGTGCTGGCTCTGCAGGAGGAGGTGGAGATTTTGGTAAAGGAGGATTCGGCTCCTCTGTTGGAAGGATTGAAAAAACGCACCAGGAAGGCCTTCGGGATACGGAAGAAAGAAAAGGACACTGACTCTACGGGGTCACCAGACAGAGATGGTGGACCACAGAAAAAGACCAACGGTGCTCCAAATGGCTTCTACGGGGAGATTGATTGGGACAGATATaaCTCGCCTGAGTTAGATGATGAAGGATATAGCATCAGGCcagaagaggaagagggagCAGCCCCCAAAGAAAAGTCTCACTTTTTCTCCTCAAGTGAgtctgaggaagaggaggaccaccgcaaaaagtttaaaatcaaaatcagaCCGCTGCCAGCAGACGCTAACATTGCAACTCCCTCGGTAGATGAATTAAAAGCCTCCATAGGCAACATAGCTCTGTCTCCCTCGCCTCTGAGGAATAGTCCGAGACGTAGCCCGGGGCTGGCTAAAAGAAATCC

Function

symbol description
sgip1a Predicted to be involved in clathrin coat assembly and clathrin-dependent endocytosis. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be active in clathrin-coated pit and clathrin-coated vesicle. Orthologous to human SGIP1 (SH3GL interacting endocytic adaptor 1).
sgip1 Enables SH3 domain binding activity. Predicted to be involved in several processes, including energy homeostasis; positive regulation of feeding behavior; and positive regulation of receptor-mediated endocytosis. Predicted to act upstream of or within plasma membrane tubulation. Located in clathrin-coated pit and cytoplasm.

NR:

description
PREDICTED: SH3-containing GRB2-like protein 3-interacting protein 1 isoform X4

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU67233 True 937 TUCP 0.52 9 15358861 15459386

Neighbor

gene id symbol gene type direction distance location
LOC122346435 wdr78,LOC107590676 coding upstream 18725 15334030 ~ 15340136 (+)
ghrhrb ghrhrb,LOC107704523,LOC107692395,LOC107556991,LOC107731650,LOC107717144 coding upstream 174195 15162993 ~ 15184666 (+)
cyldl LOC107556989,LOC107731632,LOC107704521,LOC107692392,LOC107717142,LOC107594643 coding upstream 204239 15148130 ~ 15154622 (+)
kank4 kank4,LOC107731645,LOC107704518,LOC107717130,LOC107692389,LOC107556542,LOC107591186 coding upstream 350792 14964912 ~ 15008069 (+)
dock7 dock7,LOC107591182 coding upstream 401658 14915866 ~ 14957203 (+)
pfkfb4b pfkfb4b,LOC107711047,LOC107673509,LOC107748389,LOC107585116,LOC108440764,LOC103024058 coding downstream 186634 15646020 ~ 15657188 (+)
LOC122347276 sumf1,LOC107673603,LOC107585117,LOC107667304 coding downstream 224180 15683566 ~ 15691034 (+)
LOC122347482 tsfm,LOC107711018,LOC107585120 coding downstream 236240 15695626 ~ 15697839 (+)
LOC122346397 pomgnt1,LOC107675946,LOC107692396 coding downstream 286688 15746074 ~ 15753735 (+)
LOC122347155 pik3r3,LOC107594617,LOC107717145,LOC107692397,LOC106584012,LOC107731623,LOC107556985 coding downstream 354536 15813922 ~ 15941551 (+)
G45400 NA non-coding upstream 14447 15275615 ~ 15344414 (+)
LOC122347324 NA non-coding upstream 125807 15231824 ~ 15233054 (+)
LOC122347325 NA non-coding upstream 127115 15230821 ~ 15231746 (+)
G45371 NA non-coding upstream 244210 15099837 ~ 15114651 (+)
G45364 mafa,mafaa,LOC107717140,LOC107591187,LOC107556987,LOC107731633 non-coding upstream 272332 15010246 ~ 15086529 (+)
LOC122346981 NA non-coding downstream 2576 15461962 ~ 15462420 (+)
G45421 NA non-coding downstream 26988 15486374 ~ 15487892 (+)
G45447 NA non-coding downstream 51354 15510740 ~ 15577035 (+)
G45456 NA non-coding downstream 120876 15580262 ~ 15583406 (+)
G45470 uroc1 non-coding downstream 178560 15637946 ~ 15638524 (+)
pomgnt1 pomgnt1,LOC107675946,LOC107692396 other upstream 114581 15236165 ~ 15244280 (+)
meltf mfi2,LOC107692364,LOC107709202,LOC107659038,LOC107591189,LOC107739178,LOC107590629 other upstream 1378575 13972173 ~ 13980286 (+)
G44887 NA other upstream 1948949 13394229 ~ 13409912 (+)
G44645 NA other upstream 2249495 13108735 ~ 13109366 (+)
smx5 lsm2,LSM2,smx5 other upstream 2276742 13080565 ~ 13082119 (+)
G45448 LOC107585177,LOC107673508,LOC107711046,LOC107748403,LOC107582692 other downstream 105595 15564981 ~ 15566668 (+)
G45894 NA other downstream 1727322 17186708 ~ 17187308 (+)
G46022 NA other downstream 2535805 17995191 ~ 17996717 (+)
tubgcp5 tubgcp5,LOC107585157,LOC107673606,LOC107582726,LOC107753407,LOC107685296 other downstream 2697269 18156655 ~ 18166242 (+)
atp10a atp10a,LOC107673579,LOC107711085,LOC107733604,LOC107685287,LOC107585184 other downstream 3117792 18577178 ~ 18616958 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) G487282 NA non-coding CI01000340 null 4432099 ~ 4432647 (+)