G45447


Basic Information

Item Value
gene id G45447
gene name NA
gene type non-coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056704.1
NCBI id CM032073.1
chromosome length 27473687
location 15510740 ~ 15577035 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>TU67274
tttttccttctctttctctattaaCCAATCGGATTCCTCTCACCTACTTTGAAGTGGGTTTAAATTACAGGACATCCAAtcaataaaaaccaaacaagttAGATGGTATGCACCACGTTTTCCCCTGTGCATTTCTACCTAACTTCACGCTACATAACGTAATATGCAAAAGATaactttaaaagaagaaaaaggaaagagtaaacattacaaatacaaattaaaacaaactgaataaaatacctACTTAAACCCTATCagtgaaatgatttattttctataggGTTACAtacataaaaaaaaatcctggtaGTAAACATGACGATAATTGAGATAAAAACGTTTCACTGACTTTATCTCCATAAACACTATAGACTGTAGagtgaaaaaaacatatataatcacaaattaattataaatctaTTGCTGAGATTTAGGAAAGTACACTttctgtgcaaaaaataaagttattaaagaAAAGTACAAGTATGCTTAACGTGCAAAAAATAGCCTACTATTGTAAcaaggcttttaaaaaaatgtaaacattaaatttGGCTTTCTCTGGAAATGTAACAGAggtaatatatttgaatattcctTGATACATCCTAATTGACAGCTGTTTTTACATCGCTCACAGTCGTGATAGGAGTGGCAATATTCAGGTGGTTTTAACACTGTACAAAAGTAAAAGTTCATGTGCGCTGATACATCTgcaattatgctttttttttttttttttttacccaagtCATTGTATTGTTTTCATGAATAACATTTAGTGTTAGATGACAGCCAAAGCACTTAATTTGAAATCTAGTGTGTGAGTGATTGAGATGTAAAATATTGCTTAAGAAAACGTGAAGACAggaagcaaataataataaaagaaaaaacattaaatagctGGTATGTTGAAAAGACACACCAGCACTGATCACTTATTCTCGCATACAAAATGCTAATGATTCCAGCAAAAATCTTCAGTAGAAAATTAGAAAGAAAACTTGAATAGCCTTCAAACCCACTCTGCGCCAGCCTCGATCGCAAGCACAGACCTACATGTGCGGACacaagcacacgcacacacacacacacacacactcgctcgcaCCCCAACACTAGGGTTATTATTCAATAACTGGATTCCAGTCACCCATGTGGCAATTGAGAAGAAAGGATAATACAATATATGAGGCCTAAAGTTGCTCATCTTTAGGACTCATAACTGACTTTTTCTGCCCAGCGTTTCAAACATTCGGAAACCGTCGAGAGTCACATAAAAAGGATGGAACAGCTTGATGGAGTGTTGCTGATGAGGATGTGAGGTCATAGGTTAGTAGTGGGCTGGAACAGTGAGAAGAGCCTCCTCTGGCAGACGTGAAATGTCCACATTCTGTCACagtttgaaaagaaatattatttttccaaataacATTAGaatgaatacatgtaaaatGACTGTGTGGTTTTCTCACCTCAGGTTTGTCTCTGTGAGTGTTCACCGCCTCCACGTTAAGATAGATCGACTCCACTTTA
>TU67276
ttttttttttttttatttttttttttttttttttttgtgatgacagaatgttttattGACAGTACTTccagaaaatgtcaaatttgaGAACCATGGACTTCACATACGTTATCATAATTATTACTACTGATCACGGAGACAGGTTAAATCACAGATTCACAGAGCTCTTGGTCGGTTCACAGAAGTGCTCTTGTAggttacataaaaaaaaatcctggtaGTAAACATGACGATAATTGAGATAAAAACGTTTCACTGACTTTATCTCCATAAACACTATAGACTGTAGagtgaaaaaaacatatataatcacaaattaattataaatctaTTGCTGAGATTTAGGAAAGTACACTttctgtgcaaaaaataaagttattaaagaAAAGTACAAGTATGCTTAACGTGCAAAAAATAGCCTACTATTGTAAcaaggcttttaaaaaaatgtaaacattaaatttGGCTTTCTCTGGAAATGTAACAGAggtaatatatttgaatattcctTGATACATCCTAATTGACAGCTGTTTTTACATCGCTCACAGTCGTGATAGGAGTGGCAATATTCAGGTGGTTTTAACACTGTACAAAAGTAAAAGTTCATGTGCGCTGATACATCTgcaattatgctttttttttttttttttttacccaagtCATTGTATTGTTTTCATGAATAACATTTAGTGTTAGATGACAGCCAAAGCACTTAATTTGAAATCTAGTGTGTGAGTGATTGAGATGTAAAATATTGCTTAAGAAAACGTGAAGACAggaagcaaataataataaaagaaaaaacattaaatagctGGTATGTTGAAAAGACACACCAGCACTGATCACTTATTCTCGCATACAAAATGCTAATGATTCCAGCAAAAATCTTCAGTAGAAAATTAGAAAGAAAACTTGAATAGCCTTCAAACCCACTCTGCGCCAGCCTCGATCGCAAGCACAGACCTACATGTGCGGACacaagcacacgcacacacacacacacacacactcgctcgcaCCCCAACACTAGGGTTATTATTCAATAACTGGATTCCAGTCACCCATGTGGCAATTGAGAAGAAAGGATAATACAATATATGAGGCCTAAAGTTGCTCATCTTTAGGACTCATAACTGACTTTTTCTGCCCAGCGTTTCAAACATTCGGAAACCGTCGAGAGTCACATAAAAAGGATGGAACAGCTTGATGGAGTGTTGCTGATGAGGATGTGAGGTCATAGGTTAGTAGTGGGCTGGAACAGTGAGAAGAGCCTCCTCTGGCAGACGTGAAATGTCCACATTCTGTCACagtttgaaaagaaatattatttttccaaataacATTAGaatgaatacatgtaaaatGACTGTGTGGTTTTCTCACCTCAGGTTTGTCTCTGTGAGTGTTCACCGCCTCCACGTTAAGATAGATCGACTCCACTTTA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU67274 True 1542 lncRNA 0.35 2 15568118 15577035
TU67276 False 1450 lncRNA 0.35 3 15510740 15577035

Neighbor

gene id symbol gene type direction distance location
LOC122346435 wdr78,LOC107590676 coding upstream 170604 15334030 ~ 15340136 (+)
ghrhrb ghrhrb,LOC107704523,LOC107692395,LOC107556991,LOC107731650,LOC107717144 coding upstream 326074 15162993 ~ 15184666 (+)
cyldl LOC107556989,LOC107731632,LOC107704521,LOC107692392,LOC107717142,LOC107594643 coding upstream 356118 15148130 ~ 15154622 (+)
kank4 kank4,LOC107731645,LOC107704518,LOC107717130,LOC107692389,LOC107556542,LOC107591186 coding upstream 502671 14964912 ~ 15008069 (+)
dock7 dock7,LOC107591182 coding upstream 553537 14915866 ~ 14957203 (+)
pfkfb4b pfkfb4b,LOC107711047,LOC107673509,LOC107748389,LOC107585116,LOC108440764,LOC103024058 coding downstream 68985 15646020 ~ 15657188 (+)
LOC122347276 sumf1,LOC107673603,LOC107585117,LOC107667304 coding downstream 106531 15683566 ~ 15691034 (+)
LOC122347482 tsfm,LOC107711018,LOC107585120 coding downstream 118591 15695626 ~ 15697839 (+)
LOC122346397 pomgnt1,LOC107675946,LOC107692396 coding downstream 169039 15746074 ~ 15753735 (+)
LOC122347155 pik3r3,LOC107594617,LOC107717145,LOC107692397,LOC106584012,LOC107731623,LOC107556985 coding downstream 236887 15813922 ~ 15941551 (+)
G45421 NA non-coding upstream 22848 15486374 ~ 15487892 (+)
LOC122346981 NA non-coding upstream 48320 15461962 ~ 15462420 (+)
G45400 NA non-coding upstream 166326 15275615 ~ 15344414 (+)
LOC122347324 NA non-coding upstream 277686 15231824 ~ 15233054 (+)
LOC122347325 NA non-coding upstream 278994 15230821 ~ 15231746 (+)
G45456 NA non-coding downstream 3227 15580262 ~ 15583406 (+)
G45470 uroc1 non-coding downstream 60911 15637946 ~ 15638524 (+)
G45459 LOC107711016,LOC107673510,LOC107748416 non-coding downstream 66999 15644034 ~ 15645126 (+)
LOC122346530 NA non-coding downstream 227253 15804288 ~ 15805565 (+)
G45635 NA non-coding downstream 311722 15888757 ~ 16117279 (+)
G45419 sgip1,sgip1a,LOC107739126 other upstream 51354 15358861 ~ 15459386 (+)
pomgnt1 pomgnt1,LOC107675946,LOC107692396 other upstream 266460 15236165 ~ 15244280 (+)
meltf mfi2,LOC107692364,LOC107709202,LOC107659038,LOC107591189,LOC107739178,LOC107590629 other upstream 1530454 13972173 ~ 13980286 (+)
G44887 NA other upstream 2100828 13394229 ~ 13409912 (+)
G44645 NA other upstream 2401374 13108735 ~ 13109366 (+)
G45894 NA other downstream 1609673 17186708 ~ 17187308 (+)
G46022 NA other downstream 2418156 17995191 ~ 17996717 (+)
tubgcp5 tubgcp5,LOC107585157,LOC107673606,LOC107582726,LOC107753407,LOC107685296 other downstream 2579620 18156655 ~ 18166242 (+)
atp10a atp10a,LOC107673579,LOC107711085,LOC107733604,LOC107685287,LOC107585184 other downstream 3000143 18577178 ~ 18616958 (+)
si:dkey-195m11.8 si:dkey-195m11.8,LOC107585129,LOC107673511,LOC107711061,LOC107667357,LOC107733585,LOC107582701,LOC107711063,LOC107673480,LOC107733603,LOC107582828,LOC107667335,LOC107579851 other downstream 3685549 19262584 ~ 19347629 (+)

Expression


Co-expression Network