G45470 (uroc1)


Basic Information

Item Value
gene id G45470
gene name uroc1
gene type non-coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056704.1
NCBI id CM032073.1
chromosome length 27473687
location 15637946 ~ 15638524 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>TU67316
AGCGTATTTATTAATGacccttatttttatttttagggggGAAGTGATAAATGGTGGTTTTGGATTGGTTCTGGATGGTTCTGAAGAAGCAGGGCAAAAAGCTAAACTAATGCTGAACTGGGATGTCTCTAATGGGGTGGCACGGAGATGCTGGTCTGGCAATGCTAATGCTTATGAGACAATTCAACGTACCATGGAGAACCAGCACCAGCTGAGAGTCACAATGCCCAACCCAGTACAGGACGATCAAATCCTGGACCGTGCACTGCATAAAAGACtgaacgatttttttttttttttgtttttaaatatgacattattcattaaaagcaACAGAATTAGTGTTtattaacacaatttttttcataccagaaaaaattgtaaatgtaaagtaataaaaataaaataaaaaataaaaatgtacacctgcatttgtattttataaatgaaaacaaccgttttatttcagtgaattgacttgaataaatatttgaggaaaagaaa

Function

symbol description
uroc1 Predicted to enable urocanate hydratase activity. Predicted to be involved in histidine catabolic process. Predicted to act upstream of or within histidine metabolic process. Human ortholog(s) of this gene implicated in urocanase deficiency. Orthologous to human UROC1 (urocanate hydratase 1).

NR:

description
PREDICTED: urocanate hydratase isoform X1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU67316 True 504 lncRNA 0.34 2 15637946 15638524

Neighbor

gene id symbol gene type direction distance location
LOC122346435 wdr78,LOC107590676 coding upstream 297810 15334030 ~ 15340136 (+)
ghrhrb ghrhrb,LOC107704523,LOC107692395,LOC107556991,LOC107731650,LOC107717144 coding upstream 453280 15162993 ~ 15184666 (+)
cyldl LOC107556989,LOC107731632,LOC107704521,LOC107692392,LOC107717142,LOC107594643 coding upstream 483324 15148130 ~ 15154622 (+)
kank4 kank4,LOC107731645,LOC107704518,LOC107717130,LOC107692389,LOC107556542,LOC107591186 coding upstream 629877 14964912 ~ 15008069 (+)
dock7 dock7,LOC107591182 coding upstream 680743 14915866 ~ 14957203 (+)
pfkfb4b pfkfb4b,LOC107711047,LOC107673509,LOC107748389,LOC107585116,LOC108440764,LOC103024058 coding downstream 7496 15646020 ~ 15657188 (+)
LOC122347276 sumf1,LOC107673603,LOC107585117,LOC107667304 coding downstream 45042 15683566 ~ 15691034 (+)
LOC122347482 tsfm,LOC107711018,LOC107585120 coding downstream 57102 15695626 ~ 15697839 (+)
LOC122346397 pomgnt1,LOC107675946,LOC107692396 coding downstream 107550 15746074 ~ 15753735 (+)
LOC122347155 pik3r3,LOC107594617,LOC107717145,LOC107692397,LOC106584012,LOC107731623,LOC107556985 coding downstream 175398 15813922 ~ 15941551 (+)
G45456 NA non-coding upstream 54540 15580262 ~ 15583406 (+)
G45447 NA non-coding upstream 60911 15510740 ~ 15577035 (+)
G45421 NA non-coding upstream 150054 15486374 ~ 15487892 (+)
LOC122346981 NA non-coding upstream 175526 15461962 ~ 15462420 (+)
G45400 NA non-coding upstream 293532 15275615 ~ 15344414 (+)
G45459 LOC107711016,LOC107673510,LOC107748416 non-coding downstream 5510 15644034 ~ 15645126 (+)
LOC122346530 NA non-coding downstream 165764 15804288 ~ 15805565 (+)
G45635 NA non-coding downstream 250233 15888757 ~ 16117279 (+)
G45643 NA non-coding downstream 513658 16152182 ~ 16155761 (+)
G45684 NA non-coding downstream 657007 16295531 ~ 16298954 (+)
G45448 LOC107585177,LOC107673508,LOC107711046,LOC107748403,LOC107582692 other upstream 71278 15564981 ~ 15566668 (+)
G45419 sgip1,sgip1a,LOC107739126 other upstream 178560 15358861 ~ 15459386 (+)
pomgnt1 pomgnt1,LOC107675946,LOC107692396 other upstream 393666 15236165 ~ 15244280 (+)
meltf mfi2,LOC107692364,LOC107709202,LOC107659038,LOC107591189,LOC107739178,LOC107590629 other upstream 1657660 13972173 ~ 13980286 (+)
G44887 NA other upstream 2228034 13394229 ~ 13409912 (+)
G45894 NA other downstream 1548184 17186708 ~ 17187308 (+)
G46022 NA other downstream 2356667 17995191 ~ 17996717 (+)
tubgcp5 tubgcp5,LOC107585157,LOC107673606,LOC107582726,LOC107753407,LOC107685296 other downstream 2518131 18156655 ~ 18166242 (+)
atp10a atp10a,LOC107673579,LOC107711085,LOC107733604,LOC107685287,LOC107585184 other downstream 2938654 18577178 ~ 18616958 (+)
si:dkey-195m11.8 si:dkey-195m11.8,LOC107585129,LOC107673511,LOC107711061,LOC107667357,LOC107733585,LOC107582701,LOC107711063,LOC107673480,LOC107733603,LOC107582828,LOC107667335,LOC107579851 other downstream 3624060 19262584 ~ 19347629 (+)

Expression


Co-expression Network