LOC122347580 (ttc4,LOC107738930,LOC107659046,LOC107709194,LOC107692369)


Basic Information

Item Value
gene id LOC122347580
gene name ttc4,LOC107738930,LOC107659046,LOC107709194,LOC107692369
gene type misc
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056704.1
NCBI id CM032073.1
chromosome length 27473687
location 15327583 ~ 15330851 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>TU67455
ACGGGAACAGCTTGTCGAGACCATGTGGTTCCTTGCCATAATTTATTCACAGTTTTAACGCATTTTTACGTTCATCTCCTAATAGCGCATACTTTTTGAAGACCGACGGATTAAGATACATCCGGCACCAAATTTATTTAAGTGTAATATAGCacagaattgttttaaaaaagaaaaacgatgGCTGCGCCAGCTCAAGGCGAGGACAGTGACGATGGCATGGATGAATTCATGGAGAAgtttaaaacacagaaatacaaaaatgcgTTTAATGAAAGCAGCTGGGAGGAGGAGTTTGATAAGGTGCCCATGTTCATGAAGACAGCCCCAGAAAACATAGATCCAGAGAAACACCCTGATCTTGCCTGCATTCAGTCTATTATCCATGATGATGACAGAACACCAGAGGagaaAGCCAGAAGTCTAAAGGATGAAGGCAATGAGTACTTTAAGGAGAAAAATTATAAGAAAGCCATAGTGTCTTACACAGAAGGATTGAAAAAGAACTGCATGGATATTGAACTCAATGCGGTTTTGCACACCAACCGTGCAGCTGCACATTTCCATTTAGGAAATATGCGTTCAGCGTTGAATGATGCCACAGCTGCAAAAAAACTGAAGCCAGACCACCATAAAGCTATAATCAGAGGTGCACAGTGCTCAGTGGAGCTGCGTGATTATGCAGGAGCCTTGCAGTGGTGTGACGAAGGTCTCCGACTGATTCCCACTGACAGGAAACTACAGGAGCTGAGAGCCACAGCTGATAAACAGAAGAGGGAAGCCGACAGAGATGCCAGGAAGGCAAAAGTCAAAGCGAAAAAGGAGCAGAATGAGAAGGAAGCATTGTTAGCTGCCATTAAGG
>XM_043242964.1
GGCGGTAATGCGTCTCTGGTGTGTGTTAAGCAACACGGGAACAGCTTGTCGAGACCATGTGGTTCCTTGCCATAATTTATTCACAGTTTTAACGCATTTTTACGTTCATCTCCTAATAGCGCATACTTTTTGAAGACCGACGGATTAAGATACATCCGGCACCAAATTTATTTAAGTGTAATATAGCacagaattgttttaaaaaagaaaaacgatgGCTGCGCCAGCTCAAGGCGAGGACAGTGACGATGGCATGGATGAATTCATGGAGAAgtttaaaacacagaaatacaaaaatgcgTTTAATGAAAGCAGCTGGGAGGAGGAGTTTGATAAGGTGCCCATGTTCATGAAGACAGCCCCAGAAAACATAGATCCAGAGAAACACCCTGATCTTGCCTGCATTCAGTCTATTATCCATGATGATGACAGAACACCAGAGGagaaAGCCAGAAGTCTAAAGGATGAAGGCAATGAGTACTTTAAGGAGAAAAATTATAAGAAAGCCATAGTGTCTTACACAGAAGGATTGAAAAAGAACTGCATGGATATTGAACTCAATGCGGTTTTGCACACCAACCGTGCAGCTGCACATTTCCATTTAGGAAATATGCGTTCAGCGTTGAATGATGCCACAGCTGCAAAAAAACTGAAGCCAGACCACCATAAAGCTATAATCAGAGGTGCACAGTGCTCAGTGGAGCTGCGTGATTATGCAGGAGCCTTGCAGTGGTGTGACGAAGGTCTCCGACTGATTCCCACTGACAGGAAACTACAGGAGCTGAGAGCCACAGCTGATAAACAGAAGAGGGAAGCCGACAGAGATGCCAGGAAGGCAAAAGTCAAAGCGAAAAAGGAGCAGAATGAGAAGGAAGCATTGTTAGCTGCCATTAAGgagCGTGGCATTAAACTTCTGAAGACCGAGACTTCTCCACAGGGTTCGGAcagtgaggatgatgatggtgcATCTAGAGCCCTAGCGGATCTGGAGCTTGATGGAATTGGCTCCCAGGAGGCCACTGGAGCTCGTGTTTATATGGATGAGCAGGGGGTCCTTCACTGGCCGGTGCTTTTCCTCTACCCCGAGCACAGCCAGACGGACTTCATATCTGCCTTCTGCGAGAACTCCAGCTTCATGGACCATTTGGCAGTTATGTTTGGTGAAGAGCTTCCCCCCTGGGATTCAGAAAGAAAATACCAGCCACAAAATCTACAGctgttttttgaGGATCACAAAAAAGGAAGCCTTTATCAAGTCGATCTCGAAAAGTCACTTCTTAACGTTCTTCAGCACCAAAGgtgCTCGGTGAAGGCAGGGACACCTAGTTTCATTGTGCTGGTATCAGGCTCTCCGTTTTCTAAGCAgtttttatcagaaaaaaaggtcCAGAGATTGAAATGATGGTCTGTTTGGACCTTAAAAGACTTGAAACGCCTTGGCTATAAATCACCCTCCTGCTATTAAGGGCATTTCTGCTCGCCTCACCCTTTGAGAAAACTCTAGAGATTAAGGCAGAACTTTTGAAGTGGATTTCCTTTGCAGCAACATTAATGATTCACTTTAAAAGCATGTACTATCCCAACCCTCACCCATTTTGGTGGAGGAAAAAATTCTTTCATGTGCAGTTTGAGGTATGAGTCATTACATGTGTAAGATACACATATAAAGctgattatttttagattagtCAGTATTTAACTGTGCATTTTTACTGTTGctcatattgttccaaatagtgttttttttttttcaatggaaCACTCAAGAAAATATTAACCATGGAACATTTTGACTTCCATTTGAgttgacagaaaaacaatgagacacttcttaaaatataagaaagtcatacagtttTGGAATGTCATGagtatgaataaatgatgacagaattca

Function

symbol description
ttc4 Predicted to enable Hsp90 protein binding activity and actin binding activity. Acts upstream of or within cilium assembly; determination of heart left/right asymmetry; and otolith morphogenesis. Orthologous to human TTC4 (tetratricopeptide repeat domain 4).

NR:

description
PREDICTED: tetratricopeptide repeat protein 4-like

GO:

id name namespace
GO:0003779 actin binding molecular_function

KEGG:

id description
K24927 TTC4, CNS1; tetratricopeptide repeat protein 4

RNA

RNA id representative length rna type GC content exon number start site end site
TU67455 False 862 TUCP 0.43 6 15328967 15330817
XM_043242964.1 True 1897 mRNA 0.42 11 15327583 15330851

Neighbor

gene id symbol gene type direction distance location
LOC122346855 LOC107556984,LOC107731622,LOC107692431,LOC107675940,LOC107594634 coding downstream 71423 15246429 ~ 15256160 (-)
adcyap1r1b adcyap1r1b,LOC107731652,LOC107717143,LOC107692394,LOC107594619 coding downstream 115602 15187162 ~ 15211981 (-)
LOC122346528 LOC107731631,LOC107704508 coding downstream 179498 15144790 ~ 15148085 (-)
LOC122346854 zc3h3,LOC107731631,LOC107556980,LOC107717141,LOC107692390,LOC107704522 coding downstream 206970 15092139 ~ 15120613 (-)
mafaa mafa,mafaa,LOC107717140,LOC107591187,LOC107556987,LOC107731633 coding downstream 241017 15082218 ~ 15086566 (-)
LOC122346434 pars2,LOC107659014,LOC107590619,LOC107591164,LOC107709182,LOC107738922,LOC107692369 coding upstream 385 15331236 ~ 15333933 (-)
sgip1a sgip1,LOC107659047 coding upstream 14078 15344929 ~ 15394123 (-)
LOC122346414 uroc1 coding upstream 263512 15594363 ~ 15600846 (-)
LOC122346598 LOC107673517,LOC107711045,LOC107580698 coding upstream 270581 15601432 ~ 15603448 (-)
LOC122347277 endou coding upstream 360411 15691262 ~ 15695534 (-)
G45560 NA non-coding downstream 7549 15319385 ~ 15320034 (-)
G45543 NA non-coding downstream 87943 15185152 ~ 15239640 (-)
G45532 NA non-coding downstream 172967 15102690 ~ 15154616 (-)
G45355 NA non-coding downstream 421875 14905502 ~ 14905708 (-)
LOC122346442 NA non-coding downstream 671552 14651716 ~ 14656031 (-)
G45579 NA non-coding upstream 152055 15482906 ~ 15484967 (-)
G45554 NA non-coding upstream 155812 15486663 ~ 15489101 (-)
LOC122347074 NA non-coding upstream 249733 15580584 ~ 15581055 (-)
LOC122347378 NA non-coding upstream 256655 15587506 ~ 15588222 (-)
LOC122347411 efcab12 non-coding upstream 260216 15591067 ~ 15592196 (-)
G45257 ttc22,LOC107590622,LOC107692368,LOC107659045,LOC107591163 other downstream 1134417 14160475 ~ 14193166 (-)
pex5la pex5la,LOC107709207,LOC107590632,LOC107659033,LOC107692357,LOC107548659,LOC107732026 other downstream 1541680 13718202 ~ 13785903 (-)
tmem131 tmem131,LOC107659030,LOC107692350,LOC107732007 other downstream 1646289 13655260 ~ 13681294 (-)
LOC122347614 rab6ba,rab6b,LOC107696768,LOC107552273,LOC102207753,LOC100696791,LOC107694122,LOC103354239 other downstream 2429865 12525756 ~ 12897718 (-)
brdt brdt,LOC107678354,LOC107749988,LOC107675431,LOC107730697,LOC107564432 other downstream 4258117 11055035 ~ 11069466 (-)
insl5a LOC107692440 other upstream 158267 15489118 ~ 15490685 (-)
LOC122346545 LOC107582692,LOC107673508,LOC107711046 other upstream 204535 15535386 ~ 15685485 (-)
G45606 sec61a1,LOC103358725,LOC108436273,LOC108440718,LOC103023094,LOC106518493,LOC102228108 other upstream 273059 15603910 ~ 15605470 (-)
LOC122347279 LOC107556984,LOC107731622,LOC107692431,LOC107675940,LOC107594634,LOC107717133 other upstream 425458 15756309 ~ 15765107 (-)
G45730 pik3r3,LOC107692397,LOC107717145,LOC107675943 other upstream 728117 16058968 ~ 16059767 (-)

Expression


Co-expression Network