G45606 (sec61a1,LOC103358725,LOC108436273,LOC108440718,LOC103023094,LOC106518493,LOC102228108)


Basic Information

Item Value
gene id G45606
gene name sec61a1,LOC103358725,LOC108436273,LOC108440718,LOC103023094,LOC106518493,LOC102228108
gene type unknown
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056704.1
NCBI id CM032073.1
chromosome length 27473687
location 15603910 ~ 15605470 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>TU67521
CtaatagcatgtttttttgttgttattgtaggACACCTCATCCGGTGGTCCGGCTCGTGCATACCCTGTAGGTGGTCTGTGTTACTATCTGTCTCCTCCGGAGTCATTTGGTTCTGTGCTTGAAGACCCAGTCCATGCAGTGATCTACATTGTATTCATGCTGGGATCCTGTGCCTTCTTTTCTAAGACTTGGATTGAAGTTTCTGGATCATCTGCCAAAGATGTGGCCAAGCAGCTGAAAGAACAGCAGATGGTGATGAGGGGACACAGAGAAACCTCTATGGTTCATGAACTCAACAGGTACATCCCCACTGCAGCTGCATTTGGTGGACTGTGTATCGGAGGACTTTCAGTAATGGCTGACTTCCTGGGTGCCATCGGCTCTGGAACAGGAATCCTATTGGCTGTTACCATTATCTATCAGtactttgaaatatttgttaaGGAACAGAGTGAAGTTGGCAGCATGGGAGCGCTCCTCTTCTAAACAAGGacactcacaaaacacacacatacttgctGACACCTTatgaaacacttttattatttttatgattgttgtcattttttatttcggTGCgatttaaacatgtaaaaatggTCTGTCACGAGTGCTGTCTTGGGAGAACGCTAGTCCAGCTGAGCATGCTCTCCTGTTTGTCAGAAGTGGCAAAACGTTTCTAAAATTCAGTGATTGGACAGTAAAGATGGACTCTGTGAGCTCTAGCTAGGAATATTAAGGAGTTTTCCCTACTCAGTCTGTCTTTCCTCTGTCTCCATGTCACTGAATCCCTTGTTTTTCTTGTCTGATCCTAGTTATGCCAGGTAAAAGGATTTTCCAGAAAGTATTGTTAATGTTGAGTTATTGACTCAACACTGCCAAGTTtgactccacacacacaaactgggttttgttttttttgtctcagtTTGTCATATCAGTCTGATGGACATTAATTTTTCCAATAATAGCTGAAATGCTCACTCTAACACTTCATACTGTATTTAATTGTGATGGTTTAGTTATGGCAAAAGATCGGTCAGCAGAATGGCTCGTCAGTTCTAAACAAGGCAACATTAAAATGGGAAATGCAACAAACAGTATGGCACCATTGGcgtgttttttgtgttgttttaggtttttttgtgtgcgtgtgctcATTTACGCTGGAATCCTTTTGTACAGAACACATCTTTCACAGTAGGTTTCAAGGATTTTCTGTTGTTGAAAGTGCTTGGTCTGTAGTGAGAGCTCAGTGGCAGACAGAACTGGTTACACCTAAAGTCTGTTTACTTTCAAAATTAAGCCCTTTTTACTGTATCATTGGGTGTCTGTATATATGACATTTAATGCAGTGTAaccatgtaaaataaatctttttttttttttttttt

Function

symbol description
sec61a1 Predicted to enable protein transmembrane transporter activity; ribosome binding activity; and signal sequence binding activity. Involved in pronephric nephron development. Acts upstream of or within habenula development. Predicted to be located in endoplasmic reticulum membrane. Predicted to be part of Sec61 translocon complex. Is expressed in several structures, including axis; digestive system; hatching gland; midbrain hindbrain boundary; and polster. Human ortholog(s) of this gene implicated in familial juvenile hyperuricemic nephropathy. Orthologous to human SEC61A1 (SEC61 translocon subunit alpha 1).

NR:

description
PREDICTED: protein transport protein Sec61 subunit alpha-like 1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU67521 True 1395 TUCP 0.40 3 15603910 15605470

Neighbor

gene id symbol gene type direction distance location
LOC122346598 LOC107673517,LOC107711045,LOC107580698 coding downstream 462 15601432 ~ 15603448 (-)
LOC122346414 uroc1 coding downstream 3064 15594363 ~ 15600846 (-)
sgip1a sgip1,LOC107659047 coding downstream 209787 15344929 ~ 15394123 (-)
LOC122346434 pars2,LOC107659014,LOC107590619,LOC107591164,LOC107709182,LOC107738922,LOC107692369 coding downstream 269977 15331236 ~ 15333933 (-)
LOC122346855 LOC107556984,LOC107731622,LOC107692431,LOC107675940,LOC107594634 coding downstream 347750 15246429 ~ 15256160 (-)
LOC122347277 endou coding upstream 85792 15691262 ~ 15695534 (-)
mast2 mast2,LOC107717134,LOC107692432 coding upstream 546676 16152146 ~ 16253840 (-)
tmem69 tmem69,LOC107731626,LOC107684288,LOC107725194,LOC107594642,LOC107692399,LOC107579605 coding upstream 649171 16254641 ~ 16256080 (-)
LOC122347419 nasp,LOC107551040,LOC107725201,LOC107594614,LOC107731628 coding upstream 666547 16272017 ~ 16277301 (-)
akr1a1b akr1a1,akr1a1b,LOC107725198,LOC107692407,LOC107731642,LOC107684038 coding upstream 672387 16277857 ~ 16280917 (-)
LOC122347411 efcab12 non-coding downstream 11714 15591067 ~ 15592196 (-)
LOC122347378 NA non-coding downstream 15688 15587506 ~ 15588222 (-)
LOC122347074 NA non-coding downstream 22855 15580584 ~ 15581055 (-)
G45554 NA non-coding downstream 114809 15486663 ~ 15489101 (-)
G45579 NA non-coding downstream 118943 15482906 ~ 15484967 (-)
G45602 NA non-coding upstream 38599 15644069 ~ 15645396 (-)
LOC122347156 NA non-coding upstream 237661 15843131 ~ 15877467 (-)
G45709 NA non-coding upstream 296746 15902216 ~ 16118586 (-)
G45751 NA non-coding upstream 661713 16267183 ~ 16267542 (-)
G45752 NA non-coding upstream 663445 16268915 ~ 16269392 (-)
insl5a LOC107692440 other downstream 113225 15489118 ~ 15490685 (-)
LOC122347580 ttc4,LOC107738930,LOC107659046,LOC107709194,LOC107692369 other downstream 273059 15327583 ~ 15330851 (-)
G45257 ttc22,LOC107590622,LOC107692368,LOC107659045,LOC107591163 other downstream 1410744 14160475 ~ 14193166 (-)
pex5la pex5la,LOC107709207,LOC107590632,LOC107659033,LOC107692357,LOC107548659,LOC107732026 other downstream 1818007 13718202 ~ 13785903 (-)
tmem131 tmem131,LOC107659030,LOC107692350,LOC107732007 other downstream 1922616 13655260 ~ 13681294 (-)
LOC122347279 LOC107556984,LOC107731622,LOC107692431,LOC107675940,LOC107594634,LOC107717133 other upstream 150839 15756309 ~ 15765107 (-)
G45730 pik3r3,LOC107692397,LOC107717145,LOC107675943 other upstream 453498 16058968 ~ 16059767 (-)
G45731 LOC107692397,LOC107556985,LOC107717145,LOC106584012 other upstream 454423 16059893 ~ 16060466 (-)
fam183a fam183a,LOC107551015 other upstream 755697 16361167 ~ 16364020 (-)
rgs8 rgs8,LOC107711118,LOC107551030,LOC107732448,LOC107564081,LOC108441527 other upstream 1211170 16816640 ~ 16830261 (-)

Expression


Co-expression Network