LOC122347279 (LOC107556984,LOC107731622,LOC107692431,LOC107675940,LOC107594634,LOC107717133)


Basic Information

Item Value
gene id LOC122347279
gene name LOC107556984,LOC107731622,LOC107692431,LOC107675940,LOC107594634,LOC107717133
gene type misc
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056704.1
NCBI id CM032073.1
chromosome length 27473687
location 15756309 ~ 15765107 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>TU67565
CTTGGACTGCTGGGGTGCTGTGGAGCTCAGAAAGAGAGCAAATGCCTTCTTATAACGTTCTTCTCCATCATCCTGATCATTTGCATTGCTGAGACAGCAGCCGCAATAGTAACCCTGGTCTATTCCTCATACactgaGATCATTCTAAAAACGTGGGCCACGCCTGGACTGAAGGTGCAGTATGGGAAAGATAAAATCTTCACAGACTTGTGGAACTCGACCATGACAACTCTGCAGTGCTGCGGCTTCAGCAACTACAC
>XM_043242475.1
TCAAACCATTGCCATAATTGCATAAGCAAGTAAATTGTCCAGTATGTGTGAAGGAGATTTTGTACCATACAATTAGTATGAAAACCAGAGGTTGAAACCACTAGTCATGTGACACACAAACCACATTAAAGCCATTCTAACCAGTTACTTTATATACAAACCACACCCATCTCACCTGTGCACACCTCTTGCCACTTTCTTTCCCTCTCGTTCTCTTTCTTTACCCTCTCTGTCTAATCCTCGCTCAACTTTGTTTTCATCTATCACTAGACTCTCGATCAAACCAGATTAAAAATGGGCTGCTTCACATTTGTCAAAGTTGTGATGGTTGTGTTCAACTTGCTTATCTTTCTGGCGGGCGTGTGTTTGGCGGCCGCAGGGATATGGGTGACAGTGGACGAAGATTCCTTTATGAAAGTTTTGCCACCCTTTACCGATGATTTCAAGAGTCATGTCAATGTAGGAATCTTCTGCATCACTATTGGAGCAGTTATGACACTGCTTGGACTGCTGGGGTGCTGTGGAGCTCAGAAAGAGAGCAAATGCCTTCTTATAACGTTCTTCTCCATCATCCTGATCATTTGCATTGCTGAGACAGCAGCCGCAATAGTAACCCTGGTCTATTCCTCATACactgaGATCATTCTAAAAACGTGGGCCACGCCTGGACTGAAGGTGCAGTATGGGAAAGATAAAATCTTCACAGACTTGTGGAACTCGACCATGACAACTCTGCAGTGCTGCGGCTTCAGCAACTACACAGACTTCTCTGAATCCTACTACTATAAGCAGAATGGGGACCTTTACCCTCCTACCTGTTGTGGCTGTTACAAACAAATTGTAAAGAACATCCAGAGGAACGTCAAAATTGTGGGAGGAATAGCTGCTGGAGTCACTGCCATTGAGgTGGCAGCGATGGGGGTGTCTATGTACCTCTATTGCTACTTGGACAAAAAAGCCACCTGAAAGTCTCATCTTATAGTTTGTTATAATGTATATGCATCTTTTCTTTACGCTACAATGTTAGTTACTTTAAGTGTAGATAATACTGTAGATAT

Function

NR:

description
PREDICTED: tetraspanin-1-like

GO: NA

KEGG:

id description
K17348 TSPAN1; tetraspanin-1

RNA

RNA id representative length rna type GC content exon number start site end site
TU67565 False 260 lncRNA 0.48 4 15757426 15760573
XM_043242475.1 True 1058 mRNA 0.43 8 15756309 15765107

Neighbor

gene id symbol gene type direction distance location
LOC122347277 endou coding downstream 60775 15691262 ~ 15695534 (-)
LOC122346598 LOC107673517,LOC107711045,LOC107580698 coding downstream 152861 15601432 ~ 15603448 (-)
LOC122346414 uroc1 coding downstream 155463 15594363 ~ 15600846 (-)
sgip1a sgip1,LOC107659047 coding downstream 362186 15344929 ~ 15394123 (-)
LOC122346434 pars2,LOC107659014,LOC107590619,LOC107591164,LOC107709182,LOC107738922,LOC107692369 coding downstream 422376 15331236 ~ 15333933 (-)
mast2 mast2,LOC107717134,LOC107692432 coding upstream 387039 16152146 ~ 16253840 (-)
tmem69 tmem69,LOC107731626,LOC107684288,LOC107725194,LOC107594642,LOC107692399,LOC107579605 coding upstream 489534 16254641 ~ 16256080 (-)
LOC122347419 nasp,LOC107551040,LOC107725201,LOC107594614,LOC107731628 coding upstream 506910 16272017 ~ 16277301 (-)
akr1a1b akr1a1,akr1a1b,LOC107725198,LOC107692407,LOC107731642,LOC107684038 coding upstream 512750 16277857 ~ 16280917 (-)
prpf38a prpf38a,LOC107731643,LOC107725199,LOC107692408,LOC107684051 coding upstream 516282 16281389 ~ 16284146 (-)
G45544 LOC107731621,LOC107675939,LOC107556983 non-coding downstream 10773 15233267 ~ 15745536 (-)
G45602 NA non-coding downstream 110913 15644069 ~ 15645396 (-)
LOC122347411 efcab12 non-coding downstream 164113 15591067 ~ 15592196 (-)
LOC122347378 NA non-coding downstream 168087 15587506 ~ 15588222 (-)
LOC122347074 NA non-coding downstream 175254 15580584 ~ 15581055 (-)
LOC122347156 NA non-coding upstream 78024 15843131 ~ 15877467 (-)
G45709 NA non-coding upstream 137109 15902216 ~ 16118586 (-)
G45751 NA non-coding upstream 502076 16267183 ~ 16267542 (-)
G45752 NA non-coding upstream 503808 16268915 ~ 16269392 (-)
G45753 NA non-coding upstream 505795 16270902 ~ 16271108 (-)
LOC122346545 LOC107582692,LOC107673508,LOC107711046 other downstream 70824 15535386 ~ 15685485 (-)
G45606 sec61a1,LOC103358725,LOC108436273,LOC108440718,LOC103023094,LOC106518493,LOC102228108 other downstream 150839 15603910 ~ 15605470 (-)
insl5a LOC107692440 other downstream 265624 15489118 ~ 15490685 (-)
LOC122347580 ttc4,LOC107738930,LOC107659046,LOC107709194,LOC107692369 other downstream 425458 15327583 ~ 15330851 (-)
G45257 ttc22,LOC107590622,LOC107692368,LOC107659045,LOC107591163 other downstream 1563143 14160475 ~ 14193166 (-)
G45730 pik3r3,LOC107692397,LOC107717145,LOC107675943 other upstream 293861 16058968 ~ 16059767 (-)
G45731 LOC107692397,LOC107556985,LOC107717145,LOC106584012 other upstream 294786 16059893 ~ 16060466 (-)
fam183a fam183a,LOC107551015 other upstream 596060 16361167 ~ 16364020 (-)
rgs8 rgs8,LOC107711118,LOC107551030,LOC107732448,LOC107564081,LOC108441527 other upstream 1051533 16816640 ~ 16830261 (-)
G45895 NA other upstream 1421582 17186689 ~ 17187318 (-)

Expression


Co-expression Network