G45930 (LOC107582740,LOC107685313,LOC107722678)


Basic Information

Item Value
gene id G45930
gene name LOC107582740,LOC107685313,LOC107722678
gene type non-coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056704.1
NCBI id CM032073.1
chromosome length 27473687
location 17514638 ~ 17518605 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>TU67995
ACCATGGCAATTCTGTATGGTCTCTTTGGCATTGGAACAGCGTCACTGAATGTAACGTTGTCCCATAGGCCTATGAGAGCTCATGACTGTGATTacactgttaaatattacacaaaataataaaaaatagaacaGTATAAAGATCAAGCATGATTAtgcatatgtgtatatgaaATTATGTTCCTAACATTTTTGACACAGTAGTAAATAATATGAAACATATGAAACAAAGTACTCACCAGTCTCACATCCATAGAATCATTTTAGATTTCAATCATGCAGGTGATGCTTTATAAACAATGGCATGATATTTTCATCTCTTAGTTTCTTTACTATTTCGCCCTATAATTTAGAGAGGTTTTAGCTTTAAATGATTGGATTAGAGAAACGAATAAAATACGTGATGGCAGGCGTGCTGCCGAAGCTGTGGTGAATGTCCGAGCATTAACAAATCGCCAATGTTTACAGTCCACCATATGCACAAATGCACATTTGGTTCAATCGCCATCTAGTGGTCCGTTTGATTAAACATATTTTGACCCCAGATGTGTCTATTTCTTTAGTCAGTATTCTTTGGTCTTACAAACATCCCAAGGGTTGCAAGAGAATGATGACGACGACGAAATAGGCCAGTTATAGTTAATATCGAAAACGTcttacagaaatatattttttcttctccttaTAATgagtatatatgatatatgagtATATGAGTTTTCCATTTGTGCTCtactgtaaaatatgtacactaCACACGTAGGTCAATAGTTCTTAGaccaatatgtattttttaaagatattgtgTGCAGGTTGTTATGTATTTGAGTTTATAGATCACTGTTTGGAAGAGACGTACCGGAAATTATTggacaaaactaaataaatgtggcTACACTGACATCTAGTGCTCGACTTTGTGAAAGACATGCATTCATATGTTTTGAAGAACAACATAATGCTTAATTCGACCCAGAAAATGTTCccaagcagcagcagcaacaacaacaacaaataaataaataaagaatattaaatcctaagtgttaaaaaaacataaaaaatatatttagtatacaGTGGAAATGTGGCttatgacaaataataatatatcaaaatCTTGATAGTAACTGAACTCACAAGAAAAccttttcaaattaaaacaaacaaacaaaaaactcacATGTTAATTGATTTTGActtgattaattgattttaagttttaatctaaaaataaataaataaaataaaaacaacaacaacaacaaaatgaagcTAAACTGTTGGTTTGTGCTccattgtaaaatatgtacactgCAAGTTTGGACAGACATAAAACGTTTAATTCTGTCTTTGCTTACTTACCCTTATAACACACATTAACACTTGATAACTGATAACTATACcgtgcttattattattacttccaATGCAACTcttcatttaaattgttatatattgtatataataattatgtaaaaatataagaCATAAGtctttttaatagaaaacacaAGATTCAGACTTGTGGACCCTACTGTGCatgaaatgaatgcataaagCATCAATTCAGCATCAATTAGTTTGGGAAATCATTCCTTTAAGGAACACTCAACTCTCATAAATGTCCACCGCCAGATgctatttaattttcaaagaaaaaagagagatcaAAGAGCTACAGTCTCTTCAACTGGTCTGAGTACAATAGACTTAGTATAGGAGAAGTGAGTCAAGTTGACTTGAGTGTACAGTCTCTCCCTTTGCTCCAGTGAGCAGTATAATGTATAGGTGAATTTGGCCAGCACCAGAGTACAACAGATTTCCACCAGCAGCATAGAGGTATAAAATATCACCTGTTCCTTGCATGATAAGTACTTGTAAGCGGTAGTGTGTGTTGAAAGAATTGTCTGAGGAGAGCCGGTACAGATGAAAGTACTGGTGAGAAAAGGAGTTGTTATAGTCGTGCTGGGTGGTAAGGTAGTTGTTGTTGTCTCTTGACTTGTAATAGTGGTGGGGATTACTATAGCTGTAGTCGCTAAAGTTGACGTGGTGGGAATCAGTGTAGTTGTCACTTGGGCAGTTGTTGATGGTATCATGGTTGTAGAAGTGGGGGTCGCAGTCGTTGTTGGTGTGGTTGGAATCAATGTAGTTGTCAGGAGGGCAGTCGTTGATGGTATCGCGGTTGTAGAAGTGGGGGTCGCAGTTGTTGTTGGAACTGTCGTTGTTGGTGTGGTGGGAAATAATGTAGTTGTCAGGAGGGCAGTCGTTGATGGTATCGTGGTTGTTGACGCCGTAGTTGGGACTGTTGTGGTTGTTGGAGCTGTTGTTGTGGCAGTGGTGGTAGGTAGTGTGGTTGTGGTAAGTAGCAAAGTTGTGAGATGAGTAGTTGGCGCTGTGGTGATGGCTTGTGTGGTTGTCTGTGTTGTAGTTGGTTGAGTTGTTGTTGGAGTAGTTGTCTGTAAAGCAGTGGTCATTGGAGGTGCTGTTGTCATCGTTGAGACAGTTGTGGTCATGGGAACGGTACTTGTCAGGAGAGAGGTGGTAGTTGGTAAAGTTGTAAGGCATATTAATTGTTCTTCTGTTAAAGAGGTGATTGATTGCGTTTGCAGATTTTTTGGAGACTCACAAACTTCTGGTGGCTTTGATTTAATCTTGTCCTCATTGTTCTTCATCCAGTCAAAGAATGGTCGCAGGTTACAGTCACACCGCCATGGGTTCTGTTTCAGGTACAGTTTATTGAGTTTTGGAAGAGCATCAAAAACATCACCAGGAAGGCTTTGCAGTTGATTATTTCCCAGTCTGAGAGTTGTAAGAGACTGAAGTTTTTCAAAGTCCTCTTGTTTTAATGACTCTATCATGTTGTTTTGGAGATTTAGATCAATTAGTTTCCCAAGACCTTCAAAAAAGTCTGCAGATATGGTTGAAAACTGGTTTGAGGAAAGGTCTAGCTTCTTGAGCTTCTTAAGTGGACTGAAAACTCCAGTTGGTAGGTGAGTGAGATTGTTATGGCTTAGACTAAATTCGGTTATTTTGGGCATTTCTCCAAAAAGGACATTGGGAAGACTGGTAAGTTGATTGTTGTGTAGAGTTAGAGTCTTTAATGAAGAGAAACCGACAAATAGATCTTGCTGCAGTTCTGTTAAAAGATTATTCTCCAAAGAGAGTTTTGTTAATTTACTTTTGTGTGGAAATAGATTTGGTTGTATAAAGGAGATCTGGTTGCTTTCCAAGGCTATCTCTGTCACTTTAGGAAAATTATCAAAAATCCCATCCGGTAGAGCAGTCAGTTGGTTCTCATAAAGCCTGAAAATGGTCAAGCCTTTAAGTTTGGAAAAAAGAGATGCTGATACAGAACTAAGGTTGTTTTTTGCAAGATGAAGAACTGAGAGTTTCTCTAAATTGTCAAACGTCCCCTCCTCGATAGAGCCGATCTCATTCATATGTAGATGTAAGAATTTAAGgttttttaaatcatcaaatAATCCGTTTTCAAGGCTATggattttgttgctttttagaACAAGTTTTTCAAGGTTGCTGAGACCTTTAAAAACACCAACAGGTAATGATGTCACGTTTGTGCTAGATATCTCGATGGTGGTGATATTAGGCAAACCCTCAAAGGCTCCAGCCTCTACAGAGTGAGTTGAAGTACTGAGAAATTCGATTTTCTTTATTTGAGGGTTTTTAGAAAGAACTCCTTTGTGTATGACAGGAATCTGACTGTCTACAAAGAATATTTCATCGGCTCCATCTTTGAATTTTTCAGGGATTGCTGTCACCGTGTTGTCATACACATCTTGATTTTTGCAGTCTTCACCTGGTTCACAAAAATCTACAGCGCAGCTCCAGTGCAAGTGCACAAGTAtgtaaatgaatacaaatgcaatttttaaatgcacgtGCCTGT

Function

NR:

description
PREDICTED: carboxypeptidase N subunit 2-like isoform X1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU67995 True 3913 lncRNA 0.37 2 17514638 17518605

Neighbor

gene id symbol gene type direction distance location
LOC122347243 LOC107551033,LOC107711121,LOC107684213,LOC107732445,LOC107692421,LOC107594625 coding downstream 289728 17217987 ~ 17224910 (-)
brinp3a.1 brinp3a.1,LOC107585174,LOC107711117,LOC107732447,LOC107685317,LOC107564080 coding downstream 588270 16898685 ~ 16926368 (-)
rgs16 rgs16,LOC107684360,LOC107711030,LOC107551031,LOC107732438,LOC107564088,LOC107685341 coding downstream 704841 16807611 ~ 16809797 (-)
rgs5a rgs5a,LOC107684230,LOC107732440,LOC107564083,LOC107685321,LOC108441543 coding downstream 718486 16788677 ~ 16796152 (-)
nos1apa nos1ap,LOC107711121,LOC107594625 coding downstream 750364 16687378 ~ 16764274 (-)
LOC122346427 her6,LOC107680502,LOC107722674,LOC107711114,LOC107582845,LOC107685314 coding upstream 34898 17553503 ~ 17555239 (-)
LOC122346430 her6,LOC107680502,LOC107722674,LOC107711114,LOC107582845,LOC107685314 coding upstream 149582 17668187 ~ 17669843 (-)
LOC122347583 LOC107711009 coding upstream 475365 17993970 ~ 17996739 (-)
LOC122346727 cth,LOC107582733,LOC107685307,LOC107673555,LOC107585163,LOC107585162 coding upstream 496633 18015238 ~ 18024042 (-)
LOC122346729 cth,LOC107585162,LOC107673554,LOC107673555,LOC107585163,LOC107582733 coding upstream 509449 18028054 ~ 18040353 (-)
G45897 NA non-coding downstream 326844 17187456 ~ 17187794 (-)
G45770 NA non-coding downstream 1191833 16320413 ~ 16322805 (-)
G45753 NA non-coding downstream 1243530 16270902 ~ 16271108 (-)
G45752 NA non-coding downstream 1245246 16268915 ~ 16269392 (-)
G45751 NA non-coding downstream 1247096 16267183 ~ 16267542 (-)
G45993 NA non-coding upstream 289016 17807621 ~ 17808115 (-)
G46000 NA non-coding upstream 303931 17822536 ~ 17822735 (-)
LOC122346731 nit2,LOC107585165,LOC107673472,LOC107582734,LOC107685305 non-coding upstream 521759 18040364 ~ 18044630 (-)
LOC122346732 nit2 non-coding upstream 544176 18062781 ~ 18066949 (-)
G46074 NA non-coding upstream 578463 18097068 ~ 18097490 (-)
brinp3a.2 brinp3a.2,LOC107711116,LOC107585215,LOC107732449,LOC107667973,LOC107685312 other downstream 100499 17382327 ~ 17414139 (-)
G45910 NA other downstream 206160 17307815 ~ 17308478 (-)
LOC122347244 nos1apb,LOC107715504,LOC107560777,LOC107701337,LOC107593855 other downstream 268252 17235790 ~ 17246386 (-)
G45895 NA other downstream 327320 17186689 ~ 17187318 (-)
rgs8 rgs8,LOC107711118,LOC107551030,LOC107732448,LOC107564081,LOC108441527 other downstream 684377 16816640 ~ 16830261 (-)
opa1 opa1,LOC107585173,LOC107711112,LOC107582739,LOC107673572,LOC107722677 other upstream 225110 17743715 ~ 17774107 (-)
G46420 LOC107752101,LOC107678225,LOC107581302 other upstream 1125701 18644306 ~ 18645134 (-)
LOC122347235 NA other upstream 1188018 18706623 ~ 18707596 (-)
G46423 sec23b,LOC107753900,LOC107752097,LOC107551934,LOC107659946 other upstream 1195569 18714174 ~ 18717488 (-)
G46478 NA other upstream 1536541 19055146 ~ 19056131 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000340_07486593_07487826 NA coding CI01000340 null 7486477 ~ 7487826 (+)