G46000


Basic Information

Item Value
gene id G46000
gene name NA
gene type non-coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056704.1
NCBI id CM032073.1
chromosome length 27473687
location 17822536 ~ 17822735 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>TU68093
ATTGTGAGATACGCGTCGAGTTAGCTGTCGAGTAGCAGCATGTTATTGTATCATCGCTTAGTAGTTTGCGTCGGTCCATAATTGTCATTTAAACTTTGACTCCTTTTATTGCGCTGAACCTTAATGAACTGTgatgttaccatggcaacaacACTTGGCAAGTTTAAGGATCACCCGGCTTCCCCTTGCAGGAACAAAAC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU68093 True 200 lncRNA 0.43 1 17822536 17822735

Neighbor

gene id symbol gene type direction distance location
LOC122346430 her6,LOC107680502,LOC107722674,LOC107711114,LOC107582845,LOC107685314 coding downstream 152693 17668187 ~ 17669843 (-)
LOC122346427 her6,LOC107680502,LOC107722674,LOC107711114,LOC107582845,LOC107685314 coding downstream 267297 17553503 ~ 17555239 (-)
LOC122347243 LOC107551033,LOC107711121,LOC107684213,LOC107732445,LOC107692421,LOC107594625 coding downstream 597626 17217987 ~ 17224910 (-)
brinp3a.1 brinp3a.1,LOC107585174,LOC107711117,LOC107732447,LOC107685317,LOC107564080 coding downstream 896168 16898685 ~ 16926368 (-)
rgs16 rgs16,LOC107684360,LOC107711030,LOC107551031,LOC107732438,LOC107564088,LOC107685341 coding downstream 1012739 16807611 ~ 16809797 (-)
LOC122347583 LOC107711009 coding upstream 171235 17993970 ~ 17996739 (-)
LOC122346727 cth,LOC107582733,LOC107685307,LOC107673555,LOC107585163,LOC107585162 coding upstream 192503 18015238 ~ 18024042 (-)
LOC122346729 cth,LOC107585162,LOC107673554,LOC107673555,LOC107585163,LOC107582733 coding upstream 205319 18028054 ~ 18040353 (-)
LOC122346728 cth,LOC107585162,LOC107673554,LOC107673555,LOC107585163,LOC107582733 coding upstream 222918 18045653 ~ 18060885 (-)
nit2 nit2,LOC107673472,LOC107585165,LOC107582734,LOC107685305 coding upstream 256899 18079634 ~ 18083673 (-)
G45993 NA non-coding downstream 14421 17807621 ~ 17808115 (-)
G45930 LOC107582740,LOC107685313,LOC107722678 non-coding downstream 303931 17514638 ~ 17518605 (-)
G45897 NA non-coding downstream 634742 17187456 ~ 17187794 (-)
G45770 NA non-coding downstream 1499731 16320413 ~ 16322805 (-)
G45753 NA non-coding downstream 1551428 16270902 ~ 16271108 (-)
LOC122346731 nit2,LOC107585165,LOC107673472,LOC107582734,LOC107685305 non-coding upstream 217629 18040364 ~ 18044630 (-)
LOC122346732 nit2 non-coding upstream 240046 18062781 ~ 18066949 (-)
G46074 NA non-coding upstream 274333 18097068 ~ 18097490 (-)
G46092 NA non-coding upstream 294621 18117356 ~ 18117582 (-)
G46140 NA non-coding upstream 427199 18249934 ~ 18250635 (-)
opa1 opa1,LOC107585173,LOC107711112,LOC107582739,LOC107673572,LOC107722677 other downstream 48429 17743715 ~ 17774107 (-)
brinp3a.2 brinp3a.2,LOC107711116,LOC107585215,LOC107732449,LOC107667973,LOC107685312 other downstream 408397 17382327 ~ 17414139 (-)
G45910 NA other downstream 514058 17307815 ~ 17308478 (-)
LOC122347244 nos1apb,LOC107715504,LOC107560777,LOC107701337,LOC107593855 other downstream 576150 17235790 ~ 17246386 (-)
G45895 NA other downstream 635218 17186689 ~ 17187318 (-)
G46420 LOC107752101,LOC107678225,LOC107581302 other upstream 821571 18644306 ~ 18645134 (-)
LOC122347235 NA other upstream 883888 18706623 ~ 18707596 (-)
G46423 sec23b,LOC107753900,LOC107752097,LOC107551934,LOC107659946 other upstream 891439 18714174 ~ 18717488 (-)
G46478 NA other upstream 1232411 19055146 ~ 19056131 (-)
vdrb vdrb,LOC107585146,LOC107673565,LOC107711077,LOC107582718,LOC107667372,LOC107733590 other upstream 1292326 19115061 ~ 19149731 (-)

Expression


Co-expression Network