G46032


Basic Information

Item Value
gene id G46032
gene name NA
gene type non-coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056704.1
NCBI id CM032073.1
chromosome length 27473687
location 18029997 ~ 18059288 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>TU68144
GCTGAGGAAGGTTGAGGCATGCTCCAGTTTTCCTTTGATGTAGAAAGAGATCATCCCAGGACAGCCTGAGCACTGTCTCCTTGTCAGCTCGTGCTGAGGGTGAGATGGAAGACCTGAAGGAAAAGAGATGATCAAGGAATCTCTCTGTATCGGTTCAGTTTGAACAGTCCAGTTCAGTGTAGCTTAGAGGTGGCATCATACCAATGATTGTAAAAGAATGTACATACATTAAATATCAAACAGCACAGCTATTTTTAACCGTGATAAtggaataattatttaattacttataCAGTCAGGTCcatatatttttgaacacacaaatttttgatttttttttgggagTACCCCCATTTTTAGGGACTCGCATGTAATCtgacaaataaatgtgatcataaataaaatgtttattttgaatattttgctgAGAATCCTTTGCAGGCGTCACAAGATACAAAGAGTGCCAGGCCTTTACTGCAGCTGATATcaattgttgtttgtttgtgggtctttctgcctttagttttgtcttcagcAGGTGAAATGCAAGGATTGAGATCAGAAGTTTTACTTGACCACTGCAGAATATTCCACTTTTCCAACTTCAAATGATTCCAGCTGTCACGCCATCAGTAAACACCAGTAACCGAGCACCACTAGAAACCATGTTTAATCATGCCATCACACTGCTCCACCATATTTTACAGATGTTGTGCGCTTTGGATCAGGAACTGCATCCCTTCTCCATACATTTTTCTTCCTGTCAtttttgagatgcacctgtatatGGACCTAACTGTACACATCACAACAAACCACAGCCACCTGGGAAGATGACTCTGTCCACTCTTGGGTCGGCCTCCAGAAACTGTGCCGCAGCCATTGCGTTCCTGAAGTGCTGCTTCATTCTCACGTGGAGCGTCTTCAGACCCCGGTGGCACATATAACAGTCAAATGGAGAAGGTACACTCCCAAGCACTCAGCAAAAACTTCAGTCGTTCATTGAGATCATCACGGTTGAGAGAAATCAGTCCCATCACAACATCAATGTGTCCTGAAATTACATGGATAATTTGAACTTTGATACTTTTGAACTTAAATCAAAAGTTAATCTAATCAATCTTCAGTTTAtcttttaatttgttcttaCCATTCATGTACTTTGTTGCAGAGTACATGCAGACGTCTGCTCCAAGTGCAAGGGGGCGCTGTtccagaaatgagaaaaaaaggtgaaacactgtatttctgtattgttttcatcagaacaaagacattcatacagtttttaaactacttgagggtgagtaattggCAATTTGGTTGAACCTTTCTTTTAGGTCAGTATTTAATTCCTATATGAGAAAACTAACTGGGTCCCAAATGACACACTatgaattcaattatttatataggGTTATTTTGTAAGGAATAAGAGTCTGACAGCCCCTCTCCCTTCATGGCGTAATTAAAGCTGCGACAGTTGAGTGCATGAAGTGTTCAATGttccatttaatttttctgGTTATTTAAGTGAATAATACAGGTATTTAAggtgcactttttctttttggaattTTCAGTGTGAATGCACTATTCATACTACAAAACATCATATCATCAATCATCAATAAGTACATAAGTACACAACTTCTATCCCCTGCATGTATTATACTCATTGCTTAATAAAAAGGTCGTTTAtcctaaatcattttttaattcgtGGCACAGTGTGAAACATTAAGGCATGCTCTCTGAACATGTTAATGttgctttattttcacaaaccaaacaccagcagcactgggttatttattaaaataatgtaaatgttcatACCTGAAAATAGGGCGACATGAAAGTGTTGTCCACAACAACAATTATATCCTTGTTGTGCGTATGGACAATATCAGAACAGGCCTTGATGTCCACCACCTTCAATGTAGGGTTTGTGGGTGTTTCAATCCATA

Function

GO:

id name namespace
GO:0016810 hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds molecular_function
GO:0004418 hydroxymethylbilane synthase activity molecular_function

KEGG:

id description

RNA

RNA id representative length rna type GC content exon number start site end site
TU68144 True 1970 lncRNA 0.38 3 18029997 18059288

Neighbor

gene id symbol gene type direction distance location
ptger3 LOC107711104,LOC107585167,LOC107726516,LOC107685339,LOC107582843 coding upstream 37712 17983772 ~ 17992285 (+)
zranb2 zranb2,LOC107685308,LOC107726518 coding upstream 46370 17976798 ~ 17983627 (+)
negr1 LOC107673552,LOC107582736,LOC107685309,LOC107726517,LOC107585169,LOC107711106 coding upstream 95194 17840043 ~ 17934803 (+)
traf3ip2l LOC107585170,LOC107673545,LOC107711107,LOC107726519,LOC107582737 coding upstream 211765 17809261 ~ 17818232 (+)
chd1l chd1l,LOC107711109,LOC107726512,LOC107585192 coding upstream 220818 17794996 ~ 17809179 (+)
LOC122346998 NA coding downstream 18786 18078074 ~ 18080184 (+)
gtpbp6 gtpbp6,LOC107673610,LOC107585160,LOC107685303,LOC107582731 coding downstream 24499 18083787 ~ 18087910 (+)
slc9a7 slc9a7,LOC107711095,LOC107673530,LOC107753405,LOC107685298 coding downstream 58455 18117743 ~ 18150537 (+)
cyfip1 cyfip1,LOC107673532,LOC107716963,LOC107685293 coding downstream 107608 18166896 ~ 18198194 (+)
herc2 herc2,LOC107716961 coding downstream 149510 18208798 ~ 18255091 (+)
G46024 NA non-coding upstream 11162 18015240 ~ 18018835 (+)
G46020 NA non-coding upstream 34928 17944726 ~ 17995069 (+)
G45962 LOC107585173,LOC107582739,LOC107711112 non-coding upstream 257264 17772154 ~ 17772733 (+)
G45922 her6,LOC107680502,LOC107722674,LOC107711114,LOC107582845,LOC107685314 non-coding upstream 360990 17553517 ~ 17669007 (+)
G45903 NA non-coding upstream 790019 17237590 ~ 17239978 (+)
G46173 NA non-coding downstream 301688 18360976 ~ 18361214 (+)
G46187 gabra5,LOC107711088,LOC107585151,LOC107673539 non-coding downstream 383581 18442869 ~ 18460135 (+)
G46216 NA non-coding downstream 586903 18646191 ~ 18707615 (+)
G46224 NA non-coding downstream 633278 18692566 ~ 18694409 (+)
G46222 NA non-coding downstream 640335 18699623 ~ 18710368 (+)
G46022 NA other upstream 33280 17995191 ~ 17996717 (+)
G45894 NA other upstream 842689 17186708 ~ 17187308 (+)
G45448 LOC107585177,LOC107673508,LOC107711046,LOC107748403,LOC107582692 other upstream 2463329 15564981 ~ 15566668 (+)
G45419 sgip1,sgip1a,LOC107739126 other upstream 2570611 15358861 ~ 15459386 (+)
pomgnt1 pomgnt1,LOC107675946,LOC107692396 other upstream 2785717 15236165 ~ 15244280 (+)
tubgcp5 tubgcp5,LOC107585157,LOC107673606,LOC107582726,LOC107753407,LOC107685296 other downstream 97367 18156655 ~ 18166242 (+)
atp10a atp10a,LOC107673579,LOC107711085,LOC107733604,LOC107685287,LOC107585184 other downstream 517890 18577178 ~ 18616958 (+)
si:dkey-195m11.8 si:dkey-195m11.8,LOC107585129,LOC107673511,LOC107711061,LOC107667357,LOC107733585,LOC107582701,LOC107711063,LOC107673480,LOC107733603,LOC107582828,LOC107667335,LOC107579851 other downstream 1203296 19262584 ~ 19347629 (+)
itpr1a itpr1a,LOC107748403,LOC107711046,LOC107673508,LOC107585177 other downstream 1506723 19566011 ~ 19594008 (+)
ghrl LOC107585199,LOC107711011,LOC107673481 other downstream 1724889 19784177 ~ 19786297 (+)

Expression


Co-expression Network