G46160


Basic Information

Item Value
gene id G46160
gene name NA
gene type non-coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056704.1
NCBI id CM032073.1
chromosome length 27473687
location 18332843 ~ 18333266 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>TU68375
cagatctgtattttttatttaaaaataacaattgtctggttttcttcatttttggcAAATATAAACAGTCTTTCCAAAACCCTCTCTGTTTGTAGCATTATCACAAAGCAGCAGTAGCACCATAGCAGTGTGATACACCTGTAAGAATACAGCAGATGATCAGATGTTTCCATGGTTCATCTTCCCTGTGTCTCAGGATGAACCAGGTCTACAAAGTTTAGTTTTCATGGATTCTTCCAAGAAGAACAGACGTGTCGttcaaagcacacacacacacacacacgcaggcacACGTAGTCTTTGAAATCAAAGTCTTTTTGCTTCCCCAGATAGAAAGCGTTTATGTGTTCCAGCGAAGTCCGATGTGAGTTGCGAGCAGGTAGCACATACCTATTGTGCAGGTCATCAGCATCATGGGGAAGCC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU68375 True 424 lncRNA 0.42 1 18332843 18333266

Neighbor

gene id symbol gene type direction distance location
nipa1 nipa1,LOC107716965 coding downstream 125209 18205651 ~ 18207634 (-)
nipa2 nipa2,LOC107673599,LOC107716965,LOC107685294,LOC107582725 coding downstream 127609 18198983 ~ 18205234 (-)
LOC122346611 fndc9,LOC107673533,LOC107585156,LOC107711090,LOC107716964,LOC107580334,LOC107685295 coding downstream 141320 18187428 ~ 18191523 (-)
chst7 chst7,LOC107711096,LOC107673531,LOC107585159,LOC107685297,LOC107753406 coding downstream 176878 18154549 ~ 18155965 (-)
rp2 rp2,LOC107753404,LOC107711097,LOC107685300,LOC107673570 coding downstream 216466 18110646 ~ 18116377 (-)
LOC122346396 gabrg3 coding upstream 30572 18363838 ~ 18455787 (-)
gabra5 gabra5,LOC107711088,LOC107673539,LOC107585151,LOC107685289,LOC107582724 coding upstream 124861 18458127 ~ 18488874 (-)
LOC122346546 dtd1,LOC107752123,LOC107678219,LOC107660112,LOC107753913,LOC107551933 coding upstream 369588 18702854 ~ 18705732 (-)
LOC122346645 LOC106676354,LOC106674584,LOC106676400 coding upstream 409799 18743065 ~ 18744116 (-)
LOC122347578 LOC107678224,LOC107752100,LOC107581387 coding upstream 429979 18763245 ~ 18765483 (-)
G46140 NA non-coding downstream 82208 18249934 ~ 18250635 (-)
G46092 NA non-coding downstream 215261 18117356 ~ 18117582 (-)
G46074 NA non-coding downstream 235353 18097068 ~ 18097490 (-)
LOC122346732 nit2 non-coding downstream 265894 18062781 ~ 18066949 (-)
LOC122346731 nit2,LOC107585165,LOC107673472,LOC107582734,LOC107685305 non-coding downstream 288213 18040364 ~ 18044630 (-)
G46172 NA non-coding upstream 26413 18359679 ~ 18359981 (-)
G46412 sec23b,LOC107678217,LOC107752097,LOC107581388,LOC107551934,LOC107753900 non-coding upstream 270725 18603991 ~ 18686824 (-)
LOC122346470 NA non-coding upstream 309456 18642722 ~ 18643353 (-)
G46421 NA non-coding upstream 323576 18656842 ~ 18721168 (-)
G46432 LOC107752101,LOC107678225,LOC107581302,LOC107551936,LOC107753899,LOC107672678 non-coding upstream 428318 18761584 ~ 18762435 (-)
opa1 opa1,LOC107585173,LOC107711112,LOC107582739,LOC107673572,LOC107722677 other downstream 558736 17743715 ~ 17774107 (-)
brinp3a.2 brinp3a.2,LOC107711116,LOC107585215,LOC107732449,LOC107667973,LOC107685312 other downstream 918704 17382327 ~ 17414139 (-)
G45910 NA other downstream 1024365 17307815 ~ 17308478 (-)
LOC122347244 nos1apb,LOC107715504,LOC107560777,LOC107701337,LOC107593855 other downstream 1086457 17235790 ~ 17246386 (-)
G45895 NA other downstream 1145525 17186689 ~ 17187318 (-)
G46420 LOC107752101,LOC107678225,LOC107581302 other upstream 311040 18644306 ~ 18645134 (-)
LOC122347235 NA other upstream 373357 18706623 ~ 18707596 (-)
G46423 sec23b,LOC107753900,LOC107752097,LOC107551934,LOC107659946 other upstream 380908 18714174 ~ 18717488 (-)
G46478 NA other upstream 721880 19055146 ~ 19056131 (-)
vdrb vdrb,LOC107585146,LOC107673565,LOC107711077,LOC107582718,LOC107667372,LOC107733590 other upstream 781795 19115061 ~ 19149731 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000340_08327142_08338311 NA coding CI01000340 null 8326952 ~ 8338448 (-)