atp10a (atp10a,LOC107673579,LOC107711085,LOC107733604,LOC107685287,LOC107585184)


Basic Information

Item Value
gene id atp10a
gene name atp10a,LOC107673579,LOC107711085,LOC107733604,LOC107685287,LOC107585184
gene type misc
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056704.1
NCBI id CM032073.1
chromosome length 27473687
location 18577178 ~ 18616958 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>TU68431
TGACGCGATGGGTGAAGACGATAAAACAGAGTGAGGAACTTTTCTTACGGCCCTTCGCCATCAAGGAGGATCAGCATGATTACATAGATACCATCTTTTATTGGTTCAAGAAAAGAGACAAAAGTTTTGGGCGAAGTATGGCGCGAGAGACCGGAGAGTCTGGAGAAACGAAAAGTACCAAAGtgaaaaagcataaaagaaggaaaagcaaaaaggaGAGCAAAACCCGGATTGTACACGCCAACATTTTGTATGACCATACCAAAGGAGGGGATAACCCCAACAGACACTATGCAAACAATAAGATCAAAACCACAAAATACACTCTGCTTTCTTTCCTACCGAAGAACCTCTTCGAGCAGTTCCACCGATTTGCCAACgtgtattttgttttcatagccTTACTGAATTTCGTGCCTGTGGTCAACGCTTTTCAACCAGAGTTGGCTCTTGCCCctgtggtttttattttgtccGTTACCGCTATTAAGGATTTATGGGAAGATTACAGACGACACCGCTCggataaagaaataaatcatttggaCTGTCTCGTTTACTGCAGGAGTGAGAAACGATATGTGGAGAAATACTGGAAAGAGGTGCGGGTCGGAGACTTCATTGCCTGCGATGCAACGAGATCCTGCCGGGCGGATGTTCTCCTGCTCAGCAGCAGCGACCCAGACCGACTGTGTCACATTGAGACGGCCACACTGGACGGGGAAACCAACCTCAAGCAGAGGCAGGTGGTGCGCAGCTTT
>XM_043242478.1
ATCGCTCGGCCCTGCCTTAAAGCATCTTCAGCTactaaagggggaaaaaaaagatgccgCTGTAAAACTTTTCAGGGCTAACGTGAAAAAGGGAGAGGATTGACGCGATGGGTGAAGACGATAAAACAGAGTGAGGAACTTTTCTTACGGCCCTTCGCCATCAAGGAGGATCAGCATGATTACATAGATACCATCTTTTATTGGTTCAAGAAAAGAGACAAAAGTTTTGGGCGAAGTATGGCGCGAGAGACCGGAGAGTCTGGAGAAACGAAAAGTACCAAAGtgaaaaagcataaaagaaggaaaagcaaaaaggaGAGCAAAACCCGGATTGTACACGCCAACATTTTGTATGACCATACCAAAGGAGGGGATAACCCCAACAGACACTATGCAAACAATAAGATCAAAACCACAAAATACACTCTGCTTTCTTTCCTACCGAAGAACCTCTTCGAGCAGTTCCACCGATTTGCCAACgtgtattttgttttcatagccTTACTGAATTTCGTGCCTGTGGTCAACGCTTTTCAACCAGAGTTGGCTCTTGCCCctgtggtttttattttgtccGTTACCGCTATTAAGGATTTATGGGAAGATTACAGACGACACCGCTCggataaagaaataaatcatttggaCTGTCTCGTTTACTGCAGGAGTGAGAAACGATATGTGGAGAAATACTGGAAAGAGGTGCGGGTCGGAGACTTCATTGCCTGCGATGCAACGAGATCCTGCCGGGCGGATGTTCTCCTGCTCAGCAGCAGCGACCCAGACCGACTGTGTCACATTGAGACGGCCACACTGGACGGGGAAACCAACCTCAAGCAGAGGCAGGTGGTGCGCAGCTTTATCGACCTGATGAACCTGTTTGGTGTGTTTTACAGAATCCATCGCAGTGGAAAGAGAGACTGCCTGTACAAAGACAATCTGCTGCTCAGGGGCTGCACCATCCGCAACACAGAGGAGGCTGTAGGAATCGTCATCTATGCAGGTCATGAAACAAAAGCAATGCTGAACAACAATGGCCCTCGTTATAAACGCAGCAAACTGGAGCGGCAGATGAACGTAGATGTGTTCTGGTGCGTCATCATCCTCCTGGTCATGTGCCTCTTTTCTGCCATTGGACATGGCCTGTGGATGTTCCAGTATGGAGATAAGAGGCCTGTCTTTGACGTCCTGAGCCCAGAAGGAACCAACTTATCTCCAGTGGTCTCAGCCATTTATCTCTTCCTGACCATGATTATAGTATTGCAGGTGCTGATCCCAATCTCGCTCTTTGTTTCCATTGAAATAGTGAAGATATGCCAGGTGTACTTTATACATCAGGACATGGAGCTGTACGATGAGGAAACAGACTCTCACCTCCAATGCAGGGCTCTGAACATCACAGAGGACCTGGGCCAAATGCAGTACATTTTCTCTGATAAGACCGGCACGCTCACGGAAAACAAGATGGTGTTTCGCCGTTGCACTGTGGCAGGAGTCGAGTACTCTCATGATGCCAACGCGAGGAGGCTTGCTATGTACCAGGAAATGGACTCGGAGGAGGAGGACTGTACATCTCATGGTGGAACTCTCCCTCGCCGGGACAGCGTCACCAGCCACCAGAGTGGAAAAGTGGTATTGCGATCACAGAGCACTAAATCTCACCGTCGTACTGGGAGCAGAGCCGAAGCCAAACGAGCCAGCATCCTGTCCAAACACACTGCCTTCAGCAGTCCACAGGAAAAGGACATTACTCCAGATCCCCAGCTCATGGATAAAGTCAATGAGTGCAGCAGCCAGATGGAGTTCATGCGTTTTCATAGTCAGCCCCTGAATCAGATCCCCCCTGACCTGTGTGACGTCTTTGATTTTTTCATTGCTCTCACTATCTGCAATACTGTGGTTGTGTCCTCACCCAATCAGCCCCGGCAGAAGGTGCGTCGCTCTGAGTTGAAGTCTCCAGTGAAGACCATCGAGGACTTCATCAAGCGCTTCACGAGCCGCCTGACCTCTGGCTCCAACAGCAGCAGCTCATCCAGTCTGGCCACCAACCGCTCGTCCTCCCATAAAGTGGGCTGCAGCATGCTGTCCTCCCCTCGGCTGAGAGCACGCTCACCAAGCTGAACGAGGAAAAACGTCCGGAGCATGACCTGCAGCATGCCTTCAGCCCCGTCCCGCACAACCGATAAAACAAAAGCTTTGGCTCAAGATGAATGCGAGCTCAGATATGAAGCGGAGTCGGACGAGGCTGCACTGGTTTATGCAGGGGCCTATAAGTGTGCTCTTGTCGGTCGTTTGCCAGATCAGGTGACCGTGGAGCTTCCACACTTGGGCAAGTTGAGTTTCGAACTTCTGCACACACTGGGGTTCGACTCCACAAGAAAGAGGATGTCAGTGGTGGTGAAACACCCTTTGACTGAGCAAATCACCGTCTACACCAAGGGTGCCGATTCAGTCATCATGGATTTGATCAGACCAGCCACAGATGATTGCAAAGGAAAGCGACAAAGAAAAATCTTGTATAAAACTCAAAACTACTTAAATCTTTATGCTGCAGACGGTCTCAGGACGCTCTGTATCGCCAAaaagGTTGTCAGTAAGGAGGAGTATGCCAGTTGGCTACAGCTCCACCTGGAAGCCGAGACAGCCATACAGAGGAGAGAGGAGTTGCTTTTTGATTCTGCATTACGACTAGAGACCAACCTCCAACTTTTGGGAGCAACAGGTATTGAGGACAGACTTCAGGATGGGGTTCCCGAGACCATCGCCTCTCTGAGGAAAGCAGGCCTTCAGATCTGGGTGCTGACAGGAGATAAACAAGAGACTGCCATCAACATCGCCTATGCCTGCAAACTGCTGGACCCAGAGGAAGAGATAATCACTCTTAATGCTGACTCACAGGAGGCCTGTGCTGTATTGCTCGAGAACAGTCTGCACTACATCCAGGCCAAGTTCCTTTGCAACCCACGACCAGATAGAGACTACGCTGACATCCACTTCTCTTCTCCGGTGTGTTCCCCGGCTTCCTCTGGTCACTCCAGCCCGTTCCTGGTGCATCGGCTAGGGCTGGTGATCGACGGTCGAACCTTGGCCTACGCACTGGACAAGAGTTTGGAGGACAAGTTCCTGGCCGTGGCTCGAAGTTGCAGGTCCGTTCTATGCTGTCGCTCGACGCCCCTGCAGAAGAGCATGGTGGTCAAGTTAGTGCGGAACAAGCTCAAGGTCATGACTCTGGCAATAGGTGACGGAGCAAATGATGTTAGTATGATCCAAGTGGCAGACGTAGGGGTTGGGATCTCTGGACAGGAGGGCATGCAGGCGGTGATGGCCAGTGACTTTGCCCTGCCACGATTTCGTTACCTGCAGAAGCTGCTCTTGGTTCACGGCCATTGGTGTTACTCTCGTCTCGCCAACATGATCTTATACTTCTTCTACAAAAATGCTATGTTCGTTGCCCTCATCTTCTGGTATCAGTTCTACTGCGGGTTCTCTGGGTCAGCCATGGTTGATCAGTGGTACCTGATCTTCTTCAACCTGATGTTCTCCGCATTCCCTCAGCTCATCACCGGCACCCTGGACAAAGATGTGTCAGCAGAAACCCTGCAGGAGTTGCCGCAGCTCTACATGAATGGACAAAACTCAGAGGAATATAAACCCTACATGTTCTGGATGAACATGATTGATGCCTTCTACCAAAGCCTCATCTGTTTCTTCATCCCTTACTTTGCTTACGTTGACTCTGATGTGGATTTGTTTACATGGGGCACTCCCATCACCACCTTGGCACTCTTCACCATTTTGCTGCACTTAGGCATAGAAACCAAAACCTGGACGTGGATGAACTGGGTGTCGATTGGCTTCAGTATAGCTCTCTTCTTTACTGTGGCGCTGTGCTACAATGCTTCCTGCCCAACCTGTTTCTCTCCCAACACTTATTGGACCATGCAGAGGCTGCTGGGAGACCCTGTGTTTTACATTCTGTGTGTTGTCACACCTATTGCCGCTCTTCTTCCcagATACTTTTATAGGGCTTGTCAGGGAACTCTATTCCCAAACCCTGTCCACGTGGGAAGACAACTGGACAAACTGCCAGTGGACATGCGCAGGATCTTCCTGAGCCAGAGCCAGATGAAGCTGGGCTCCCTCGGGTCACTGTTTCCCCCCGTGCTCCATTTTTCCTCTCTGCAGGCCCTTTCAGAAAGACTACAGGCCCAGGGTAAAGCAAGCCCACATGAAATGCAGGAAAAAGCTCCATCCTGCAGACAGGGCTCGGGCGGCCCTCTATCTGAGAACTTACACTGCATAAAGGAACCTTCGAGTCCCGCTGCAGGCACTCTGCCGTACACCAAACACTCCGGCCTCCAGGACTATTTTGGATAG

Function

symbol description
atp10a Predicted to enable ATPase-coupled intramembrane lipid transporter activity. Predicted to be involved in phospholipid translocation. Predicted to act upstream of or within phospholipid transport. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be active in plasma membrane. Orthologous to human ATP10A (ATPase phospholipid transporting 10A (putative)).

NR:

description
PREDICTED: LOW QUALITY PROTEIN: probable phospholipid-transporting ATPase VA

GO:

id name namespace
GO:0034220 ion transmembrane transport biological_process
GO:0006200 obsolete ATP catabolic process biological_process
GO:0006812 cation transport biological_process
GO:0045332 phospholipid translocation biological_process
GO:0016021 integral component of membrane cellular_component
GO:0005524 ATP binding molecular_function
GO:0019829 ATPase-coupled cation transmembrane transporter activity molecular_function
GO:0000287 magnesium ion binding molecular_function

KEGG:

id description
K01530 E7.6.2.1; phospholipid-translocating ATPase

RNA

RNA id representative length rna type GC content exon number start site end site
TU68431 False 761 TUCP 0.46 2 18577278 18588447
XM_043242478.1 True 4377 mRNA 0.50 26 18577178 18616958

Neighbor

gene id symbol gene type direction distance location
gabrb3 gabrb3,LOC107711086,LOC107673538,LOC107585149,LOC107685288,LOC107582723,LOC107733605 coding upstream 45744 18488910 ~ 18531434 (+)
oca2 oca2,LOC107716962 coding upstream 243903 18255522 ~ 18333275 (+)
herc2 herc2,LOC107716961 coding upstream 322087 18208798 ~ 18255091 (+)
cyfip1 cyfip1,LOC107673532,LOC107716963,LOC107685293 coding upstream 378984 18166896 ~ 18198194 (+)
slc9a7 slc9a7,LOC107711095,LOC107673530,LOC107753405,LOC107685298 coding upstream 426641 18117743 ~ 18150537 (+)
LOC122347579 LOC107678225,LOC107752101,LOC107581302 coding downstream 143038 18759996 ~ 18762778 (+)
LOC122346577 atp10a,LOC107673579,LOC107711085,LOC107733604,LOC107685287 coding downstream 182934 18799892 ~ 19048806 (+)
LOC122346576 myhb,LOC107721187,LOC107568178,LOC107667337,LOC108254796,LOC108443910,LOC108271865 coding downstream 335429 18952387 ~ 18967901 (+)
LOC122346586 p4htm,LOC107673589,LOC107712096,LOC107584428,LOC107721183,LOC107667396 coding downstream 351949 18968907 ~ 18975022 (+)
LOC122346580 kbtbd12,LOC107673613,LOC107712091,LOC107584421,LOC107721181,LOC107667403,LOC107568198 coding downstream 365172 18982130 ~ 18985288 (+)
G46187 gabra5,LOC107711088,LOC107585151,LOC107673539 non-coding upstream 117043 18442869 ~ 18460135 (+)
G46173 NA non-coding upstream 215964 18360976 ~ 18361214 (+)
G46028 NA non-coding upstream 516185 18039793 ~ 18060993 (+)
G46032 NA non-coding upstream 517890 18029997 ~ 18059288 (+)
G46018 NA non-coding upstream 530491 18027774 ~ 18046687 (+)
G46216 NA non-coding downstream 29233 18646191 ~ 18707615 (+)
G46224 NA non-coding downstream 75608 18692566 ~ 18694409 (+)
G46222 NA non-coding downstream 82665 18699623 ~ 18710368 (+)
G46220 sec23b non-coding downstream 99071 18716029 ~ 18717494 (+)
G46223 NA non-coding downstream 101323 18718281 ~ 18720346 (+)
tubgcp5 tubgcp5,LOC107585157,LOC107673606,LOC107582726,LOC107753407,LOC107685296 other upstream 410936 18156655 ~ 18166242 (+)
G46022 NA other upstream 580461 17995191 ~ 17996717 (+)
G45894 NA other upstream 1389870 17186708 ~ 17187308 (+)
G45448 LOC107585177,LOC107673508,LOC107711046,LOC107748403,LOC107582692 other upstream 3010510 15564981 ~ 15566668 (+)
G45419 sgip1,sgip1a,LOC107739126 other upstream 3117792 15358861 ~ 15459386 (+)
si:dkey-195m11.8 si:dkey-195m11.8,LOC107585129,LOC107673511,LOC107711061,LOC107667357,LOC107733585,LOC107582701,LOC107711063,LOC107673480,LOC107733603,LOC107582828,LOC107667335,LOC107579851 other downstream 645626 19262584 ~ 19347629 (+)
itpr1a itpr1a,LOC107748403,LOC107711046,LOC107673508,LOC107585177 other downstream 949053 19566011 ~ 19594008 (+)
ghrl LOC107585199,LOC107711011,LOC107673481 other downstream 1167219 19784177 ~ 19786297 (+)
LOC122347202 uqcc2,cf125,LOC107580205,LOC108440614,LOC107667355,LOC106565356 other downstream 1226089 19843047 ~ 19846548 (+)
slc6a11a slc6a11a,LOC108440580,LOC107673588 other downstream 1249601 19866559 ~ 19873535 (+)

Expression


Co-expression Network