G46220 (sec23b)


Basic Information

Item Value
gene id G46220
gene name sec23b
gene type non-coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056704.1
NCBI id CM032073.1
chromosome length 27473687
location 18716029 ~ 18717494 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>TU68451
AGTGGGTTGAGGACGGCTTTGCAGTTGGCCGGCTGCACAGAACTGGCTCGTACTGGACCGGTGGCAGGTCTGGTCTCTCTTTGAGAGGAGTGTAGAGGCAGGAAACAGGAACCACTAGCCGTGTGGCCTCCAGGCGGCTGGAAGGCCAGAGGTTCCAACTGCAGCGTACTCCATCCCGATCTTCGTTCTGTTGGATGAACTCTTGGTAGGTCGCCATGACAGTGTGAACTTTTTAATCGATGtggctttaataaataaaatgcgaTAACCGCGATCACACGACCATTGAAAGTGAAAATTACTTCGTCGAACAGGATTCGTCTCCAGCCGGTTCCTGGTGCTCCGAAGAGTGACGT

Function

symbol description
sec23b Predicted to enable GTPase activator activity. Acts upstream of or within cartilage development; embryonic neurocranium morphogenesis; and erythrocyte development. Predicted to be located in cytoplasmic vesicle; cytosol; and endoplasmic reticulum membrane. Predicted to be part of COPII vesicle coat. Predicted to be active in endoplasmic reticulum exit site. Human ortholog(s) of this gene implicated in Cowden syndrome and congenital dyserythropoietic anemia type II. Orthologous to human SEC23B (SEC23 homolog B, COPII coat complex component).

NR:

description
protein transport protein Sec23B isoform X1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU68451 True 356 lncRNA 0.53 2 18716029 18717494

Neighbor

gene id symbol gene type direction distance location
gabrb3 gabrb3,LOC107711086,LOC107673538,LOC107585149,LOC107685288,LOC107582723,LOC107733605 coding upstream 184595 18488910 ~ 18531434 (+)
oca2 oca2,LOC107716962 coding upstream 382754 18255522 ~ 18333275 (+)
herc2 herc2,LOC107716961 coding upstream 460938 18208798 ~ 18255091 (+)
cyfip1 cyfip1,LOC107673532,LOC107716963,LOC107685293 coding upstream 517835 18166896 ~ 18198194 (+)
slc9a7 slc9a7,LOC107711095,LOC107673530,LOC107753405,LOC107685298 coding upstream 565492 18117743 ~ 18150537 (+)
LOC122347579 LOC107678225,LOC107752101,LOC107581302 coding downstream 42502 18759996 ~ 18762778 (+)
LOC122346577 atp10a,LOC107673579,LOC107711085,LOC107733604,LOC107685287 coding downstream 82398 18799892 ~ 19048806 (+)
LOC122346576 myhb,LOC107721187,LOC107568178,LOC107667337,LOC108254796,LOC108443910,LOC108271865 coding downstream 234893 18952387 ~ 18967901 (+)
LOC122346586 p4htm,LOC107673589,LOC107712096,LOC107584428,LOC107721183,LOC107667396 coding downstream 251413 18968907 ~ 18975022 (+)
LOC122346580 kbtbd12,LOC107673613,LOC107712091,LOC107584421,LOC107721181,LOC107667403,LOC107568198 coding downstream 264636 18982130 ~ 18985288 (+)
G46222 NA non-coding upstream 5661 18699623 ~ 18710368 (+)
G46216 NA non-coding upstream 8414 18646191 ~ 18707615 (+)
G46224 NA non-coding upstream 21620 18692566 ~ 18694409 (+)
G46187 gabra5,LOC107711088,LOC107585151,LOC107673539 non-coding upstream 255894 18442869 ~ 18460135 (+)
G46173 NA non-coding upstream 354815 18360976 ~ 18361214 (+)
G46223 NA non-coding downstream 787 18718281 ~ 18720346 (+)
G46237 NA non-coding downstream 133706 18851200 ~ 18858471 (+)
G46240 NA non-coding downstream 146598 18864092 ~ 18866840 (+)
G46242 NA non-coding downstream 165306 18882800 ~ 18886471 (+)
LOC122346587 NA non-coding downstream 219238 18936732 ~ 18937888 (+)
atp10a atp10a,LOC107673579,LOC107711085,LOC107733604,LOC107685287,LOC107585184 other upstream 99071 18577178 ~ 18616958 (+)
tubgcp5 tubgcp5,LOC107585157,LOC107673606,LOC107582726,LOC107753407,LOC107685296 other upstream 549787 18156655 ~ 18166242 (+)
G46022 NA other upstream 719312 17995191 ~ 17996717 (+)
G45894 NA other upstream 1528721 17186708 ~ 17187308 (+)
G45448 LOC107585177,LOC107673508,LOC107711046,LOC107748403,LOC107582692 other upstream 3149361 15564981 ~ 15566668 (+)
si:dkey-195m11.8 si:dkey-195m11.8,LOC107585129,LOC107673511,LOC107711061,LOC107667357,LOC107733585,LOC107582701,LOC107711063,LOC107673480,LOC107733603,LOC107582828,LOC107667335,LOC107579851 other downstream 545090 19262584 ~ 19347629 (+)
itpr1a itpr1a,LOC107748403,LOC107711046,LOC107673508,LOC107585177 other downstream 848517 19566011 ~ 19594008 (+)
ghrl LOC107585199,LOC107711011,LOC107673481 other downstream 1066683 19784177 ~ 19786297 (+)
LOC122347202 uqcc2,cf125,LOC107580205,LOC108440614,LOC107667355,LOC106565356 other downstream 1125553 19843047 ~ 19846548 (+)
slc6a11a slc6a11a,LOC108440580,LOC107673588 other downstream 1149065 19866559 ~ 19873535 (+)

Expression


Co-expression Network