LOC122346587


Basic Information

Item Value
gene id LOC122346587
gene name NA
gene type non-coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056704.1
NCBI id CM032073.1
chromosome length 27473687
location 18936732 ~ 18937888 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>TU68499
TGAAATGAAACTGTCTGTCAATGCCAGGGCTCACATAGTTGCAGAGGAGTTCCTCAAAAATTTTTAGGAAATTTTCAGCACACCTTCTGCAATACCTGTGTCACCTTGGTCACCAAAAAAACGATGGAGAGCTGTGGGGCCACTGAGGAAGTAGTTAAGGTGCGATTTGATTCCTGGACCACCAGCGAAGGTGGACCAGCTGGATCCAGAGGGTGCCGTCAGTCACGGAATGAATTCAGAGTATTGCAGTTTTGTCACTTGAGAGCAAAGTAATGGTTTTCACAGACAGGCACGGTACTTCTTTTGTCGTCTGTTTTATTCTTTGACTTCTTTGCCtctatatcttttttttttttttttttttttttttactttttgctaATGGCCTAATTTTTTCTGCAGTTCCATTTGTGTATTCTGTCTCTCTTCATCTTATCCCAAATCCTGTTATTATTTAGTAGTAGTAAAGCACTCACAACGTTGCAATATTCTGAATATGCCTCAGCTTTCCCTCatgcttatgaatattaatgagtaTGTTCTGTACATATTAAAAGGATAGACTCATTTTACCTCTGCCTTTCTAACAAACCTTAAAATCAGGGTGGGTCTATATAAATGAAACTCATTGATACTCATGAGCACAGAGGAAAAATGTTCAGTGTCCAATAATTTAAACGGTTTGTTTTGtcaatgttttttataaatatgtatactgtgttcaaatgatcatttttcatgttgagttttgatattaaaaaaacctcACGCTGGTGCACATGGATCTTAAAATCATATCAGTCATGGCAAAATAATGATGACAATGCTAAATAAATCCCTTTattgcttttgttgtgtttgtttattgtggGGTGACAGGACTTGGGTCAGTTATGTATTGCAGTAAGTTTAGTTTCTGTACATTCTGTACAATACAACGATGGCCCGTATTTGAAGAGCCAGAGAATGGTCAGGAACAATTTGGTATGCAGCACCGTTATATCTGGGGAAAAAGATCATTC
>XR_006251147.1
AAGTTAGTGGACTTTGTCATCCATTTTATGGAGGAGATCGATAAGAAAATCAGTGAAATGAAACTGTCTGTCAATGCCAGGGCTCACATAGTTGCAGAGGAGTTCCTCAAAAATTTTTAGGAAATTTTCAGCACACCTTCTGCAATACCTGTGTCACCTTGGTCACCAAAAAAACGATGGAGAGCTGTGGGGCCACTGAGGAAGTAGTTAAGGTGCGATTTGATTCCTGGACCACCAGCGAAGGTGGACCAGCTGGATCCAGAGGGTGCCGTCAGTCACGGAATGAATTCAGAGTATTGCAGTTTTGTCACTTGAGAGCAAAGTAATGGTTTTCACAGACAGGCACGGTACTTCTTTTGTCGTCTGTTTTATTCTTTGACTTCTTTGCCtctatatcttttttttttttttttttttttttttactttttgctaATGGCCTAATTTTTTCTGCAGTTCCATTTGTGTATTCTGTCTCTCTTCATCTTATCCCAAATCCTGTTATTATTTAGTAGTAGTAAAGCACTCACAACGTTGCAATATTCTGAATATGCCTCAGCTTTCCCTCatgcttatgaatattaatgagtaTGTTCTGTACATATTAAAAGGATAGACTCATTTTACCTCTGCCTTTCTAACAAACCTTAAAATCAGGGTGGGTCTATATAAATGAAACTCATTGATACTCATGAGCACAGAGGAAAAATGTTCAGTGTCCAATAATTTAAACGGTTTGTTTTGtcaatgttttttataaatatgtatactgtgttcaaatgatcatttttcatgttgagttttgatattaaaaaaacctcACGCTGGTGCACATGGATCTTAAAATCATATCAGTCATGGCAAAATAATGATGACAATGCTAAATAAATCCCTTTattgct

Function

GO:

id name namespace
GO:0034314 Arp2/3 complex-mediated actin nucleation biological_process
GO:0005885 Arp2/3 protein complex cellular_component

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU68499 True 1022 lncRNA 0.37 2 18936785 18937888
XR_006251147.1 False 901 lncRNA 0.36 2 18936732 18937714

Neighbor

gene id symbol gene type direction distance location
LOC122347579 LOC107678225,LOC107752101,LOC107581302 coding upstream 173954 18759996 ~ 18762778 (+)
gabrb3 gabrb3,LOC107711086,LOC107673538,LOC107585149,LOC107685288,LOC107582723,LOC107733605 coding upstream 405298 18488910 ~ 18531434 (+)
oca2 oca2,LOC107716962 coding upstream 603457 18255522 ~ 18333275 (+)
herc2 herc2,LOC107716961 coding upstream 681641 18208798 ~ 18255091 (+)
cyfip1 cyfip1,LOC107673532,LOC107716963,LOC107685293 coding upstream 738538 18166896 ~ 18198194 (+)
LOC122346576 myhb,LOC107721187,LOC107568178,LOC107667337,LOC108254796,LOC108443910,LOC108271865 coding downstream 14499 18952387 ~ 18967901 (+)
LOC122346586 p4htm,LOC107673589,LOC107712096,LOC107584428,LOC107721183,LOC107667396 coding downstream 31019 18968907 ~ 18975022 (+)
LOC122346580 kbtbd12,LOC107673613,LOC107712091,LOC107584421,LOC107721181,LOC107667403,LOC107568198 coding downstream 44242 18982130 ~ 18985288 (+)
ube3a ube3a,LOC107711083,LOC107582722,LOC107585142 coding downstream 123870 19061758 ~ 19071270 (+)
stk35l stk35l,LOC107711082,LOC107585147,LOC107673595,LOC107733606,LOC107685285,LOC105016730 coding downstream 149777 19087665 ~ 19096644 (+)
G46242 NA non-coding upstream 50261 18882800 ~ 18886471 (+)
G46240 NA non-coding upstream 69892 18864092 ~ 18866840 (+)
G46237 NA non-coding upstream 78261 18851200 ~ 18858471 (+)
G46223 NA non-coding upstream 216386 18718281 ~ 18720346 (+)
G46220 sec23b non-coding upstream 219238 18716029 ~ 18717494 (+)
G46250 NA non-coding downstream 1250 18939138 ~ 19004223 (+)
G46252 NA non-coding downstream 19442 18957330 ~ 18961395 (+)
G46260 LOC107673608,LOC107712089,LOC107584440,LOC107568175 non-coding downstream 51704 18989592 ~ 18993546 (+)
G46261 NA non-coding downstream 57450 18995338 ~ 18996420 (+)
G46275 NA non-coding downstream 117328 19055216 ~ 19056131 (+)
atp10a atp10a,LOC107673579,LOC107711085,LOC107733604,LOC107685287,LOC107585184 other upstream 319774 18577178 ~ 18616958 (+)
tubgcp5 tubgcp5,LOC107585157,LOC107673606,LOC107582726,LOC107753407,LOC107685296 other upstream 770490 18156655 ~ 18166242 (+)
G46022 NA other upstream 940015 17995191 ~ 17996717 (+)
G45894 NA other upstream 1749424 17186708 ~ 17187308 (+)
G45448 LOC107585177,LOC107673508,LOC107711046,LOC107748403,LOC107582692 other upstream 3370064 15564981 ~ 15566668 (+)
si:dkey-195m11.8 si:dkey-195m11.8,LOC107585129,LOC107673511,LOC107711061,LOC107667357,LOC107733585,LOC107582701,LOC107711063,LOC107673480,LOC107733603,LOC107582828,LOC107667335,LOC107579851 other downstream 324696 19262584 ~ 19347629 (+)
itpr1a itpr1a,LOC107748403,LOC107711046,LOC107673508,LOC107585177 other downstream 628123 19566011 ~ 19594008 (+)
ghrl LOC107585199,LOC107711011,LOC107673481 other downstream 846289 19784177 ~ 19786297 (+)
LOC122347202 uqcc2,cf125,LOC107580205,LOC108440614,LOC107667355,LOC106565356 other downstream 905159 19843047 ~ 19846548 (+)
slc6a11a slc6a11a,LOC108440580,LOC107673588 other downstream 928671 19866559 ~ 19873535 (+)

Expression


Co-expression Network