G46272 (LOC107585146,LOC107711077,LOC107673565,LOC107733590,LOC107667372,LOC107582718)


Basic Information

Item Value
gene id G46272
gene name LOC107585146,LOC107711077,LOC107673565,LOC107733590,LOC107667372,LOC107582718
gene type non-coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056704.1
NCBI id CM032073.1
chromosome length 27473687
location 19118052 ~ 19133603 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>TU68538
TCTCCTCCAGCCACTCGGAAAGCCAGTGCTATCAGACTGCCCACTGACATCTTCAGAAATTCTGCATTGCAGGAATTACTCAATACCGTATCATGATCTGTTTGACTTTGATACGacatggaaaatgttttttggaagAAGCTGATAATAAGCTGTTCTGAATGGACCGAGAGTAGCTCCTCAAACGTGGCTGGCCTGCCTGTAACCAACTAAaacACCTTACACTGGTTCCAGAGGCCACACTCCTTTAGTCTTGACCAGATGCTCAAAATTCTGCCAGCATGCCCAGAATCACAGCTGGTATCTTTACAGACACATTCATGTTTCATCTGATAGTCAAACACCAAACCTACACAAgcaaatatacttttaaaactcaaagatatatatatattagggctgCCGAGTTAGAGAGTTAAAGATACACAATGTTACATTAGAACACaaagatttttctttcaaaccgttgcagtctgtcagtcgtATAATGTAAGTCAATGGGCAAACAATCCttgaggataaaaaaaaaaatgtacagacaaattcaaattaaacccTGTGCCTCGTGTCAATACACTGATGTCCTAAGACACAAATCGATCGTGAAAGTGAATagtattcatataattttttacctCTGAATATCAGAATTatcctaaacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacaacactcacAAACTTCGTCCTGGAAACTCTGTATGCGGTTTAAGGTGATTGTCCATACATTCACTCCACAACCCTCCGGGTCACGCCGTTTGACCCCGCACGTCTTGATGCGATTCGGGTAAAGTTGCTAAGTGACCTGTCCGCCGAAGACCTCCAGCACCAGAGGGGTCAGCTGCATGCTGTGTTCGGGCTGGAAAGAGAGGGAGCGGTACTGTTTGGAGTGCTCTTCGTTCAGGCTGCGGAGGTCAGCCAGCTTCTGGATCATCTTAGCGTAGAGCAGACGCCCCCCCGGGTGATGCGCACGGATATACGCCTGCAGGACCTCAGATATTCTGTCCTGCAATGCTTCCACTCGCTCATGGTCCTGCACTCCGGGCCGG

Function

NR:

description
PREDICTED: vitamin D3 receptor B isoform X2

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU68538 True 1105 lncRNA 0.46 3 19118052 19133603

Neighbor

gene id symbol gene type direction distance location
slc48a1b slc48a1b,LOC107585148,LOC107711080,LOC107733581,LOC107685336,LOC108441111 coding upstream 4489 19110188 ~ 19113563 (+)
bin2b bin2b,LOC107673593,LOC107711079,LOC107685284,LOC107585145,LOC107582721,LOC107733580 coding upstream 9343 19101218 ~ 19108709 (+)
stk35l stk35l,LOC107711082,LOC107585147,LOC107673595,LOC107733606,LOC107685285,LOC105016730 coding upstream 21408 19087665 ~ 19096644 (+)
ube3a ube3a,LOC107711083,LOC107582722,LOC107585142 coding upstream 46782 19061758 ~ 19071270 (+)
LOC122346577 atp10a,LOC107673579,LOC107711085,LOC107733604,LOC107685287 coding upstream 69246 18799892 ~ 19048806 (+)
LOC122347294 LOC107711002,LOC107585140,LOC107733596,LOC107733594,LOC107667370,LOC107667371,LOC107711003,LOC107585181,LOC107582832,LOC107667300 coding downstream 58485 19192088 ~ 19205784 (+)
LOC122347426 LOC107585140,LOC107733596,LOC107667370,LOC107673453,LOC107582714,LOC107733594,LOC107711002,LOC107667371,LOC107585181,LOC107582832 coding downstream 75061 19208664 ~ 19213386 (+)
gpr84 gpr84,LOC107711075,LOC107585210,LOC107582713,LOC107733593,LOC107682832 coding downstream 82201 19215804 ~ 19219026 (+)
tac3b NA coding downstream 107210 19240813 ~ 19243429 (+)
b4galnt1b b4galnt1b,LOC107673615,LOC107667298,LOC107711068,LOC107585207,LOC107733607,LOC107582708 coding downstream 127976 19261579 ~ 19275263 (+)
G46275 NA non-coding upstream 61921 19055216 ~ 19056131 (+)
G46250 NA non-coding upstream 113829 18939138 ~ 19004223 (+)
G46261 NA non-coding upstream 121632 18995338 ~ 18996420 (+)
G46260 LOC107673608,LOC107712089,LOC107584440,LOC107568175 non-coding upstream 124506 18989592 ~ 18993546 (+)
G46252 NA non-coding upstream 156657 18957330 ~ 18961395 (+)
trnaq-uug_14 NA non-coding downstream 18499 19152102 ~ 19152173 (+)
G46265 NA non-coding downstream 87689 19221292 ~ 19223286 (+)
G46305 NA non-coding downstream 96193 19229796 ~ 19230441 (+)
G46300 c1galt1b,LOC107711070,LOC107673577,LOC107585137,LOC107579179,LOC107667385,LOC107733588 non-coding downstream 113450 19247053 ~ 19298999 (+)
G46299 NA non-coding downstream 166792 19300395 ~ 19303013 (+)
atp10a atp10a,LOC107673579,LOC107711085,LOC107733604,LOC107685287,LOC107585184 other upstream 501094 18577178 ~ 18616958 (+)
tubgcp5 tubgcp5,LOC107585157,LOC107673606,LOC107582726,LOC107753407,LOC107685296 other upstream 951810 18156655 ~ 18166242 (+)
G46022 NA other upstream 1121335 17995191 ~ 17996717 (+)
G45894 NA other upstream 1930744 17186708 ~ 17187308 (+)
G45448 LOC107585177,LOC107673508,LOC107711046,LOC107748403,LOC107582692 other upstream 3551384 15564981 ~ 15566668 (+)
si:dkey-195m11.8 si:dkey-195m11.8,LOC107585129,LOC107673511,LOC107711061,LOC107667357,LOC107733585,LOC107582701,LOC107711063,LOC107673480,LOC107733603,LOC107582828,LOC107667335,LOC107579851 other downstream 128981 19262584 ~ 19347629 (+)
itpr1a itpr1a,LOC107748403,LOC107711046,LOC107673508,LOC107585177 other downstream 432408 19566011 ~ 19594008 (+)
ghrl LOC107585199,LOC107711011,LOC107673481 other downstream 650574 19784177 ~ 19786297 (+)
LOC122347202 uqcc2,cf125,LOC107580205,LOC108440614,LOC107667355,LOC106565356 other downstream 709444 19843047 ~ 19846548 (+)
slc6a11a slc6a11a,LOC108440580,LOC107673588 other downstream 732956 19866559 ~ 19873535 (+)

Expression


Co-expression Network