G25515



Basic Information


Item Value
gene id G25515
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information


Item Value
chromosome id CI01000004
NCBI id null
chromosome length 17451736
location 1426692 ~ 1427877 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence


>TU28786
TAAAAGTACACAAAATAAGTCAAGCTGCATCCTTGTTCTGCTTGACCAAGTTACACTTACAAGTACATCTCCCTCTGAAAGTCATCCTCTGCATTGATGTCTTCACTGCCTTCTGATTGTTGTTGTTTGCCCTCTGCTTTTGCAATGATGTCAACAGCTGGCTGGTTGGTGAGGTCAAGCCTTTCAGCCCATGGAAGGCTCTTCTTAAACTCAGCAAGGGATTTCTTCAAACCCTCCACATTGTTGATGGCTTGCTTTGGCTTATCCAGAGGAATATTCAATCCAGGTTTAAGCAAACCCGTGGCGAAGGCTTCTTGGAGCTCGCCGTCTGATAATTCATCGTCGTCTTCGTCAGAATCAAACCCCAACTGGGGATCCTCATCTATTTCTACCATAATCAAATAATATAGAACGGAAATGAGACAAATAAATACAACAACAGAGAAAATTCACAGCATCCCAAAGCTTCACGTGTGGAGAGCGCTGTTTCTCGTGGGT

Function


GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

RNA


RNA id representative length rna type GC content exon number start site end site
TU28786 True 498 lncRNA 0.37 3 1426692 1427877

Neighbor


gene id symbol gene type direction distance location
CI01000004_01404265_01425424 NA coding downstream 1268 1404265 ~ 1425424 (-)
CI01000004_01394018_01397517 TMEM125B coding downstream 29175 1393969 ~ 1397517 (-)
CI01000004_01352499_01377500 SLC1A7A, SLC1A7 coding downstream 49177 1352073 ~ 1377515 (-)
CI01000004_01311508_01319203 ALDH9A1B, ALDH9A1 coding downstream 107489 1311055 ~ 1319203 (-)
CI01000004_01280983_01292761 FZR1B coding downstream 133931 1280585 ~ 1292761 (-)
CI01000004_01440447_01443088 NA coding upstream 11894 1439771 ~ 1443292 (-)
CI01000004_01554696_01564701 NA coding upstream 126779 1554656 ~ 1564701 (-)
CI01000004_01605140_01622364 NA coding upstream 176675 1604552 ~ 1622364 (-)
CI01000004_01626984_01627238 NA coding upstream 198339 1626216 ~ 1627238 (-)
CI01000004_01758554_01762415 NA coding upstream 330545 1758422 ~ 1762415 (-)
G25527 NA non-coding downstream 92703 1332563 ~ 1333989 (-)
G25524 NA non-coding downstream 95939 1330371 ~ 1330753 (-)
G25525 NA non-coding downstream 102402 1321082 ~ 1324290 (-)
CI01000004_01230991_01235864 NA non-coding downstream 189461 1230896 ~ 1235864 (-)
G25451 NA non-coding downstream 294115 1132270 ~ 1132577 (-)
G25511 NA non-coding upstream 3970 1431847 ~ 1435337 (-)
G25572 NA non-coding upstream 21258 1449135 ~ 1449927 (-)
G25561 NA non-coding upstream 119874 1547751 ~ 1552872 (-)
G25601 NA non-coding upstream 147002 1574879 ~ 1575219 (-)
G25602 NA non-coding upstream 147391 1575268 ~ 1575565 (-)
CI01000004_01773383_01774888 INSL5B other upstream 345163 1772928 ~ 1774942 (-)
G26788 NA other upstream 1846556 3267683 ~ 3275721 (-)
G27746 NA other upstream 3750350 5178227 ~ 5203724 (-)
CI01000004_05617072_05627369 NA other upstream 4192506 5616644 ~ 5628289 (-)
CI01000004_06539836_06541252 NA other upstream 5106950 6538904 ~ 6541252 (-)

Expression



Co-expression Network