G46362


Basic Information

Item Value
gene id G46362
gene name NA
gene type non-coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056704.1
NCBI id CM032073.1
chromosome length 27473687
location 19437749 ~ 19463096 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>TU68670
tttttttttttttttttttATGGAGTGTcagctttttattaaattttttttcagcatggatggaaaactttacaaacattttacagtagTCATAACATTTCTGCTCAATTTAACATGTACTAGTAACTCCTCTGCTTAGGACACCAAATCAAgccatttcttttattgttttgacaCATGAAAATACAAGTAATGAAATGCAGATACTTGTGCATTTCTGTAAATTCACTATTAGAAAAGCAAGAACGCTTTCTTTAGCCGATTTtagatgtaaatatttgcatccaaatatttgatgcattaaaaaaaacccatggcAAATGTTTGCCACAAAGCCATGTTGTGCCACAAAGTAAATCTCCTCCAAAAGACATTAATCCCAGCGCTGGGAGGCTTTGTGGATACAGCCAGGCTGAGGCCAATGCTTCATTTGTTCACTAAACATGAGAGTGAAAACATGGAACAGAAAAATTGATTAGTTGTTTGATGCAGGCAAAGTGCTGGACATCCTTCTTCCCCGAGGAGATGTGAACATATTGACATCACAGCAGTGGTTCTCCATTTCAAAGGTTCAGAATGGATCCATCTGAAAGGTAAACGCTGAGGATCTCCCCAAATTTTTCTGCCATGCTGCTTGGAGCCGTTTTAGGCTTTAGTGGTGCCAGACTGTGATGACTGTTGGCTGTGCAGCTGCTGGAGCTTCATATTCATGACTTCCACAACAGC

Function

GO:

id name namespace
GO:0005838 proteasome regulatory particle cellular_component
GO:0008540 proteasome regulatory particle, base subcomplex cellular_component

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU68670 True 726 lncRNA 0.38 2 19437749 19463096

Neighbor

gene id symbol gene type direction distance location
LOC122346461 LOC107711020,LOC107667380,LOC107740572,LOC107585130,LOC107673452,LOC107711000,LOC107580767 coding upstream 39308 19396637 ~ 19398441 (+)
LOC122346460 mettl7a,LOC107585130,LOC107711020,LOC107667380,LOC107740572,LOC107673452,LOC107711000,LOC107580767 coding upstream 42394 19393452 ~ 19395355 (+)
krt18b zgc:77517,LOC107585131,LOC107673602,LOC107711062,LOC107733602,LOC107667394,LOC107582704 coding upstream 105225 19328519 ~ 19332524 (+)
si:dkey-195m11.11 NA coding upstream 139984 19292646 ~ 19297765 (+)
ankrd33ab LOC107711022,LOC107582706,LOC107585135,LOC107667328 coding upstream 146882 19288427 ~ 19290867 (+)
c1ql4b c1ql4b,LOC107673443,LOC107711019,LOC108440793,LOC107585204,LOC107748412,LOC107667333 coding downstream 57195 19520291 ~ 19530863 (+)
smarcc2 smarcc2,LOC107711050,LOC107667400,LOC107748388,LOC107582794,LOC107673598 coding downstream 69238 19532334 ~ 19545874 (+)
endou endou coding downstream 93756 19556852 ~ 19560337 (+)
slc4a8 LOC107711038,LOC107673578,LOC107667363,LOC107585109 coding downstream 285747 19748843 ~ 19770878 (+)
LOC122347196 NA coding downstream 308796 19771892 ~ 19774436 (+)
G46355 NA non-coding upstream 28261 19408748 ~ 19409488 (+)
G46353 dip2bb,LOC107740567,LOC106565592 non-coding upstream 29873 19404465 ~ 19407876 (+)
G46299 NA non-coding upstream 134736 19300395 ~ 19303013 (+)
G46300 c1galt1b,LOC107711070,LOC107673577,LOC107585137,LOC107579179,LOC107667385,LOC107733588 non-coding upstream 138750 19247053 ~ 19298999 (+)
G46305 NA non-coding upstream 207308 19229796 ~ 19230441 (+)
G46399 NA non-coding downstream 23598 19486694 ~ 19487436 (+)
LOC122346499 NA non-coding downstream 46376 19509472 ~ 19510407 (+)
G46364 tsfm,LOC107711018,LOC107585120 non-coding downstream 90223 19553319 ~ 19554169 (+)
G46577 NA non-coding downstream 139993 19603089 ~ 19603602 (+)
G46579 NA non-coding downstream 145453 19608549 ~ 19609353 (+)
si:dkey-195m11.8 si:dkey-195m11.8,LOC107585129,LOC107673511,LOC107711061,LOC107667357,LOC107733585,LOC107582701,LOC107711063,LOC107673480,LOC107733603,LOC107582828,LOC107667335,LOC107579851 other upstream 90120 19262584 ~ 19347629 (+)
atp10a atp10a,LOC107673579,LOC107711085,LOC107733604,LOC107685287,LOC107585184 other upstream 820791 18577178 ~ 18616958 (+)
tubgcp5 tubgcp5,LOC107585157,LOC107673606,LOC107582726,LOC107753407,LOC107685296 other upstream 1271507 18156655 ~ 18166242 (+)
G46022 NA other upstream 1441032 17995191 ~ 17996717 (+)
G45894 NA other upstream 2250441 17186708 ~ 17187308 (+)
itpr1a itpr1a,LOC107748403,LOC107711046,LOC107673508,LOC107585177 other downstream 102915 19566011 ~ 19594008 (+)
ghrl LOC107585199,LOC107711011,LOC107673481 other downstream 321081 19784177 ~ 19786297 (+)
LOC122347202 uqcc2,cf125,LOC107580205,LOC108440614,LOC107667355,LOC106565356 other downstream 379951 19843047 ~ 19846548 (+)
slc6a11a slc6a11a,LOC108440580,LOC107673588 other downstream 403463 19866559 ~ 19873535 (+)
G46742 NA other downstream 623995 20087091 ~ 20095641 (+)

Expression


Co-expression Network