G46423 (sec23b,LOC107753900,LOC107752097,LOC107551934,LOC107659946)


Basic Information

Item Value
gene id G46423
gene name sec23b,LOC107753900,LOC107752097,LOC107551934,LOC107659946
gene type unknown
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056704.1
NCBI id CM032073.1
chromosome length 27473687
location 18714174 ~ 18717488 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>TU68756
CTCTTCGGAGCACCAGGAACCGGCTGGAGACGAATCCTGTTCGACGAAGTAATTTTCACTTTCAATGGTCGTGTGATCGCGGTTAtcgcattttatttattaaagccaCATCGATTAAAAAGTTCACACTGTCATGGCGACCTACCAAGAGTTCATCCAACAGAACGAAGATCGGGATGGAGTACGCTGCAGTTGGAACCTCTGGCCTTCCAGCCGCCTGGAGGCCACACGGCTAGTGGTTCCTGTTTCCTGCCTCTACACTCCTCTCAAAGAGAGACCAGACCTGCCACCGGTCCAGTACGAGCCAGTTCTGTGCAGCCGGCCAACTGCAAAGCCGTCCTCAACCCACTCTGTCAAGTGGACTTCAGAGCTAAGATATGGGCCTGCAACTTCTGCTTCCAGAGGAACTCTTTTCCTCCATCATACGCAGGCATTTCAGAAGTGAATCAGCCCGCAGAACTAATGCCTCAGTTCTCCACCATTGAGTACATAGTGCagcgTGGACCTACCACCCCTCTCATCTTCCTGTACGTGGTGGACACATGTCTGGAGGAGGAAGACCTCCAGGCCCTGAAAGAATCTCTTCAGATGTCTCTGAGTCTGTTGCCACCTAATGCCCTGGTGGGTCTCATCACCTTCGGCCGCATGATTCAGGTCCACGAGCTCAGCTGTGAAGGTATCGCCAAGAGCTACGTCTTCCGTGGCACAAAAGAGCTCACGCCCAAACAGATACAAGAGATGCTGGGACTGATGAAACCAGCTACGTCAGGACAACAAGGCAAACCACTGGCCCCTCATGATGCTGCTGCTTCCTGCAGATTTCTGCAACCTGTGCAAGCAGTAGACATGAACCTAACTGACCTTTTGGGGGAGTTGCAGAGAGACCC

Function

symbol description
sec23b Predicted to enable GTPase activator activity. Acts upstream of or within cartilage development; embryonic neurocranium morphogenesis; and erythrocyte development. Predicted to be located in cytoplasmic vesicle; cytosol; and endoplasmic reticulum membrane. Predicted to be part of COPII vesicle coat. Predicted to be active in endoplasmic reticulum exit site. Human ortholog(s) of this gene implicated in Cowden syndrome and congenital dyserythropoietic anemia type II. Orthologous to human SEC23B (SEC23 homolog B, COPII coat complex component).

NR:

description
PREDICTED: protein transport protein Sec23A-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU68756 True 887 TUCP 0.52 7 18714174 18717488

Neighbor

gene id symbol gene type direction distance location
LOC122346546 dtd1,LOC107752123,LOC107678219,LOC107660112,LOC107753913,LOC107551933 coding downstream 8442 18702854 ~ 18705732 (-)
gabra5 gabra5,LOC107711088,LOC107673539,LOC107585151,LOC107685289,LOC107582724 coding downstream 225300 18458127 ~ 18488874 (-)
LOC122346396 gabrg3 coding downstream 258387 18363838 ~ 18455787 (-)
nipa1 nipa1,LOC107716965 coding downstream 506540 18205651 ~ 18207634 (-)
nipa2 nipa2,LOC107673599,LOC107716965,LOC107685294,LOC107582725 coding downstream 508940 18198983 ~ 18205234 (-)
LOC122346645 LOC106676354,LOC106674584,LOC106676400 coding upstream 25577 18743065 ~ 18744116 (-)
LOC122347578 LOC107678224,LOC107752100,LOC107581387 coding upstream 45757 18763245 ~ 18765483 (-)
LOC122346582 LOC107584426,LOC107673614,LOC107712092 coding upstream 268562 18986050 ~ 18988440 (-)
cnga3a LOC107585144,LOC107711084,LOC107673541,LOC107685324,LOC107733584 coding upstream 353917 19071405 ~ 19078891 (-)
hdac7b NA coding upstream 396190 19113678 ~ 19123976 (-)
G46412 sec23b,LOC107678217,LOC107752097,LOC107581388,LOC107551934,LOC107753900 non-coding downstream 27350 18603991 ~ 18686824 (-)
LOC122346470 NA non-coding downstream 70821 18642722 ~ 18643353 (-)
G46172 NA non-coding downstream 354193 18359679 ~ 18359981 (-)
G46160 NA non-coding downstream 380908 18332843 ~ 18333266 (-)
G46140 NA non-coding downstream 463539 18249934 ~ 18250635 (-)
G46432 LOC107752101,LOC107678225,LOC107581302,LOC107551936,LOC107753899,LOC107672678 non-coding upstream 44096 18761584 ~ 18762435 (-)
G46439 NA non-coding upstream 140224 18857712 ~ 18858471 (-)
G46444 NA non-coding upstream 165364 18882852 ~ 18886400 (-)
G46463 p4htm,LOC107673589,LOC107712096,LOC107584428,LOC107721183,LOC107667396 non-coding upstream 252682 18970170 ~ 18972370 (-)
G46476 NA non-coding upstream 326128 19043616 ~ 19043869 (-)
LOC122347235 NA other downstream 6578 18706623 ~ 18707596 (-)
G46420 LOC107752101,LOC107678225,LOC107581302 other downstream 69040 18644306 ~ 18645134 (-)
opa1 opa1,LOC107585173,LOC107711112,LOC107582739,LOC107673572,LOC107722677 other downstream 940067 17743715 ~ 17774107 (-)
brinp3a.2 brinp3a.2,LOC107711116,LOC107585215,LOC107732449,LOC107667973,LOC107685312 other downstream 1300035 17382327 ~ 17414139 (-)
G45910 NA other downstream 1405696 17307815 ~ 17308478 (-)
G46478 NA other upstream 337658 19055146 ~ 19056131 (-)
vdrb vdrb,LOC107585146,LOC107673565,LOC107711077,LOC107582718,LOC107667372,LOC107733590 other upstream 397573 19115061 ~ 19149731 (-)
tsfm tsfm,LOC107711018,LOC107585120 other upstream 835829 19553317 ~ 19555942 (-)
tomm6 NA other upstream 1123991 19841479 ~ 19842994 (-)
tspo tspo,LOC107721166,LOC107568174,LOC107584504,LOC107667354,LOC107673503 other upstream 1125556 19843044 ~ 19847432 (-)

Expression


Co-expression Network