G46463 (p4htm,LOC107673589,LOC107712096,LOC107584428,LOC107721183,LOC107667396)


Basic Information

Item Value
gene id G46463
gene name p4htm,LOC107673589,LOC107712096,LOC107584428,LOC107721183,LOC107667396
gene type non-coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056704.1
NCBI id CM032073.1
chromosome length 27473687
location 18970170 ~ 18972370 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>TU68814
ACCATCAGATAGATAGTTGTACCAGAAAACTGCCGTCCCCTTAATGGGCTTCACTCTCAGGTTGCCTTTATCACAATGTTTCCTGGTGTCCAACAGATCCACATCATTCTGTATCAGTGActagaaaacacacagatacacgCACCCAATTATTGTCTGTCGCATGTCTTTCAATTGTGCAAAATCCTTGTATTTGGTCACAATTACACATGCAAAGATGTTTTATTCAATAGGACACACCGCTTCTTCGTAAGTCCTATTATCTGCCACTGGAAAGGTGGTCTCGCCCCCTTCTTCTACATTATTAAGGTAAAACAGAACTGTGATGTACCtgcaaaaaacccccaaaaaaaacaaggGGGAGGAAACTTAATaatcacataaataatataaataatcacattcaaaatcatgctgttgttttatacaaatttatattttattttacaacgtTATAtgattacatataaaatgttaatctcTTTGTCTTACCTGCAGGACGTCTGGAATGGGGAGGTGGTATTGGCAGCGAGGCGAGTGTGTGTGCAAGCTGTTTCAGGGTACACTGGCCCACTGTCATGATGAGCGTGGTAATGGCCACCCTGCTCATAACGCACCACTTGTAGAGGTTCACTTAACTCCACCAGTGAGGATGGTAGTCGCGTTAAACGAGTGACTCTTTTGCGGAGGTCCTGAAGAACCTGATGTGCTCCCTGACCCTGGTAGAGCCAGGTGTGTCTGCTGTTCCTCACCAGCTGACTCCTCTCCACCCCACGCTGAAGCAAAAAACGCTGAAAGGCATCACTTTTCAGATGCCTAAACTCCTCTAAATTTAAAAGACCTGCGTCAAAAGAGACATGTAATGCTCAAACACATGCTCAAAACATACATATGAGAACTCAAACTTAGCAAGTATTTGGCAATCTATGATATTTGTATATTCTGAGTGTCCTCTTATCGGATATATGCAGTTAAGCTGCAATAAGATCTCCAGCTTCAGTCTTTACCATCTCCATCCTGATCAACCTTTAGGCCATCATAGATTTCCTTAAGGTTTTCAGAAGTTAACCAGATTCCATCTCTCACTCGAGAATGTGTCAAAATCTACACCAGAAAATATGGCAATCAAGTTACAGATTACAGATAaagcaaatgaacaaacacaaacagagatAAACACAAGATATATTCAAACATTATATTTTCTTAGCATTACTAAACAGACATTGATGACTGCCAACAGACCTCATGCGGTTGCAGCTGGCCATCTTGATTGAGGTCAAGGAAATTGAAGATTTCCTCAGGACTGAGGTTAAGCTGCTGATTAAGTTCCTCTTGACCTTCAGGGACCATAACCTGACTCTCCATCAAACCCTTCAGCTGAGCCAGACGCACAACTACACCACACTCCTCCTCTGACAGAAACCCAGGGATCTCTGCagcaaacatacacacaaatacagtcaCAATTATGTTTCGTGTAGATAAAGaaatcaacacacacaaaaacacttacAATGCATGTCTCAACAAGGAAACTTTAGTTTTCATTTCTAcagatcacccaaaaatagaaatgaccTCAAAGATACTATcccatcttttttttcattcatgtttgAGCATACTGGGAATCATTaatgaaacacttttattaatgaaattagtgcattattttaatttaaattgtggGCAAATGACTGGTCTTagaacattataaacattattaaggTACTTTCACACTAAGAACAATAGCATCCACACCAATTGGATGatgtacattttgtttattataagcatGCATTTGTTGTTAAGCCCTGTTTTAAATGCTCAAGCTATTTtctattctgattggctgtaaatgtttatataattcatCATCAGCTGGAAACAACATTCTGAAAAAGATTCCATTACAAAGATAAAGCCTCtttctgctgttgttgttataaCCGTTTGAATATTActtttctctttaaataattgttaaaactTTACAATTGTCTAGTTAAGGGTAACTATGGATAAATATAACTATTgactacaacaaaaaaact

Function

symbol description
p4htm Enables 2-oxoglutarate-dependent dioxygenase activity. Predicted to be involved in peptidyl-proline hydroxylation to 4-hydroxy-L-proline. Predicted to act upstream of or within regulation of erythrocyte differentiation. Predicted to be located in endoplasmic reticulum membrane. Predicted to be integral component of membrane. Predicted to be active in endoplasmic reticulum.

NR:

description
PREDICTED: transmembrane prolyl 4-hydroxylase-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU68814 True 2057 lncRNA 0.38 2 18970170 18972370

Neighbor

gene id symbol gene type direction distance location
LOC122347578 LOC107678224,LOC107752100,LOC107581387 coding downstream 204687 18763245 ~ 18765483 (-)
LOC122346645 LOC106676354,LOC106674584,LOC106676400 coding downstream 226054 18743065 ~ 18744116 (-)
LOC122346546 dtd1,LOC107752123,LOC107678219,LOC107660112,LOC107753913,LOC107551933 coding downstream 264438 18702854 ~ 18705732 (-)
gabra5 gabra5,LOC107711088,LOC107673539,LOC107585151,LOC107685289,LOC107582724 coding downstream 481296 18458127 ~ 18488874 (-)
LOC122346396 gabrg3 coding downstream 514383 18363838 ~ 18455787 (-)
LOC122346582 LOC107584426,LOC107673614,LOC107712092 coding upstream 13680 18986050 ~ 18988440 (-)
cnga3a LOC107585144,LOC107711084,LOC107673541,LOC107685324,LOC107733584 coding upstream 99035 19071405 ~ 19078891 (-)
hdac7b NA coding upstream 141308 19113678 ~ 19123976 (-)
tns2b LOC107711076,LOC107673525,LOC107585141 coding upstream 180669 19153039 ~ 19173171 (-)
eif4bb eif4bb,LOC107673526,LOC107711078,LOC107585139,LOC107582715,LOC107733597 coding upstream 203496 19175866 ~ 19187427 (-)
G46444 NA non-coding downstream 83770 18882852 ~ 18886400 (-)
G46439 NA non-coding downstream 111699 18857712 ~ 18858471 (-)
G46432 LOC107752101,LOC107678225,LOC107581302,LOC107551936,LOC107753899,LOC107672678 non-coding downstream 207735 18761584 ~ 18762435 (-)
G46421 NA non-coding downstream 249002 18656842 ~ 18721168 (-)
G46412 sec23b,LOC107678217,LOC107752097,LOC107581388,LOC107551934,LOC107753900 non-coding downstream 283346 18603991 ~ 18686824 (-)
G46476 NA non-coding upstream 71246 19043616 ~ 19043869 (-)
G46477 LOC107673579,LOC107711085,LOC107585184,LOC107733604,LOC107685287,LOC107579827 non-coding upstream 72258 19044628 ~ 19048836 (-)
LOC122347223 NA non-coding upstream 177376 19149746 ~ 19151694 (-)
G46509 NA non-coding upstream 240269 19212639 ~ 19242811 (-)
G46540 mettl7a,LOC107711020,LOC107585130,LOC107740572,LOC107667380,LOC107673452,LOC107711000,LOC107582798 non-coding upstream 421107 19393477 ~ 19397730 (-)
G46423 sec23b,LOC107753900,LOC107752097,LOC107551934,LOC107659946 other downstream 252682 18714174 ~ 18717488 (-)
LOC122347235 NA other downstream 262574 18706623 ~ 18707596 (-)
G46420 LOC107752101,LOC107678225,LOC107581302 other downstream 325036 18644306 ~ 18645134 (-)
opa1 opa1,LOC107585173,LOC107711112,LOC107582739,LOC107673572,LOC107722677 other downstream 1196063 17743715 ~ 17774107 (-)
brinp3a.2 brinp3a.2,LOC107711116,LOC107585215,LOC107732449,LOC107667973,LOC107685312 other downstream 1556031 17382327 ~ 17414139 (-)
G46478 NA other upstream 82776 19055146 ~ 19056131 (-)
vdrb vdrb,LOC107585146,LOC107673565,LOC107711077,LOC107582718,LOC107667372,LOC107733590 other upstream 142691 19115061 ~ 19149731 (-)
tsfm tsfm,LOC107711018,LOC107585120 other upstream 580947 19553317 ~ 19555942 (-)
tomm6 NA other upstream 869109 19841479 ~ 19842994 (-)
tspo tspo,LOC107721166,LOC107568174,LOC107584504,LOC107667354,LOC107673503 other upstream 870674 19843044 ~ 19847432 (-)

Expression


Co-expression Network