tsfm (tsfm,LOC107711018,LOC107585120)


Basic Information

Item Value
gene id tsfm
gene name tsfm,LOC107711018,LOC107585120
gene type misc
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056704.1
NCBI id CM032073.1
chromosome length 27473687
location 19553317 ~ 19555942 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>TU68985
AGAAAACGTGCTTCAATGACATTCCAGTTACTGATGTAAGGAGTCTAGCGTTAGTCCTGAGGAAGATATAGAAATGTCTTTATACTCTTTATTTCGAGCTGTCAGGACAGAAGTAGTCAAGGGATGTCTCACTCAGCACGTTCAGTCTCTCTACACCAGCTGCCCGAGTTTAGCAGCAGATAAAGCACTTCTCCTCAAATTACGTAAATCTACGGGCTACACCTTTATCAACTGCAAAAAGGCCCTGGAGAAATCCAACAATGACATTACAGAGGCAGAAACCTGGCTGCACGAACAAGCCAAAAAAGAGGGCTGGAGTAAAGCGAATAAACTGGAAGGTCGAAAAGTTAAGGAAGGGCTGATTGGTCTCCTTATGGGCGACAATGCAGCGGTCATGGTTGAGgtgaactgtgaGACAGATTTTGTGGCGAGGAATGAGAAATTCCAGCAGTTGGTGAAGGATGTTGCTTTGTCTGTAATGGCTCATAACagcagcaaaaaacaaaaacagggtATATGAAGAGTGTGCTGTCTTCTGAGGATATTAATAAGCTCGATGTTCCTGAGGGATCCTCACTGGCAGATCAGGTGGCCTTGACTGTAGGGCGGTTAGGTGAGAACATTGGCGTGCGGGGCGGGTCGTCTCACTTGCTGTGCCCTCTGATTGGTACATCGGCTCATACATTCATGGGGCAGTTACCGAGCAGGTTGGCTTTGAGATGGGGCGCTATGGATCGCTAGTTGTGTTTCAAGGTGGACCAAAGGATGGGACAGACACTCTGGGAAGGAAGTTGGGGCAACATATAGTGGGTGAAGCACCCGTTTCTCTTGGCAACATGGACGATACACCATGTGGTGAAGCTGAGACAAGACTTTTGCCCCAGACCTTCCTCCTAGATCCTAAATATACTGTGGGACAGTTCCTGACTCTACAGAACGCACGTGTGCTAGACTTCATACGCTTCCAGTGTGGAGAGAGCACCAGTCAGGAGGAGTGAACAGTTCTGTTTCGAATGAGAAAAAATGTCTCCttaaagcagtggttctcagACCTGTCCCGGGGACCCCCAACCACACCATATTTTGTATGCCTCCCTCGTTTAACACCCCTGATTCAACTCTTCAGCTCATTGGTAGAATCTGCAAGACCTGAACTGGATGTGGCCTATGAGAGAGACACAAAATATCTGGTTGGGGGTCCTCAGGACAGGTTTGAGAACCACTACCTTTGTTGAAAATCTATTTTCAGTACAAACTTTTGGGCCATTTTAACCAAAACAGGATAAGATCATATCCATGATATCTCTGCCTGTACCCCTCAACCAAAATTCTAGCTTATTCATGAATtgaattaagaaaataaattgtaaagtGGTCTAATAGACTGCTGACATGTTActgctacaaaaaaaatatcctcAGATGAATGAATCTGAgatattatgtttgttttgtgccatcacaaaaaataaacattttgcaatCTGA
>TU68987
AGAAAACGTGCTTCAATGACATTCCAGTTACTGATGTAAGGAGTCTAGCGTTAGTCCTGAGGAAGATATAGAAATGTCTTTATACTCTTTATTTCGAGCTGTCAGGACAGAAGTAGTCAAGGGATGTCTCACTCAGCACGTTCAGTCTCTCTACACCAGCTGCCCGAGTTTAGCAGCAGATAAAGCACTTCTCCTCAAATTACGTAAATCTACGGGCTACACCTTTATCAACTGCAAAAAGGCCCTGGAGAAATCCAACAATGACATTACAGAGgtgaactgtgaGACAGATTTTGTGGCGAGGAATGAGAAATTCCAGCAGTTGGTGAAGGATGTTGCTTTGTCTGTAATGGCTCATAACagcagcaaaaaacaaaaacagggtATATGAAGAGTGTGCTGTCTTCTGAGGATATTAATAAGCTCGATGTTCCTGAGGGATCCTCACTGGCAGATCAGGTGGCCTTGACTGTAGGGCGGTTAGGTGAGAACATTGGCGTGCGGGGCGGGTCGTCTCACTTGCTGTGCCCTCTGATTGGTACATCGGCTCATACATTCATGGGGCAGTTACCGAGCAGGTTGGCTTTGAGATGGGGCGCTATGGATCGCTAGTTGTGTTTCAAGGTGGACCAAAGGATGGGACAGACACTCTGGGAAGGAAGTTGGGGCAACATATAGTGGGTGAAGCACCCGTTTCTCTTGGCAACATGGACGATACACCATGTGGTGAAGCTGAGACAAGACTTTTGCCCCAGACCTTCCTCCTAGATCCTAAATATACTGTGGGACAGTTCCTGACTCTACAGAACGCACGTGTGCTAGACTTCATACGCTTCCAGTGTGGAGAGAGCACCAGTCAGGAGGAGTGAACAGTTCTGTTTCGAATGAGAAAAAATGTCTCCttaaagcagtggttctcagACCTGTCCCGGGGACCCCCAACCACACCATATTTTGTATGCCTCCCTCGTTTAACACCCCTGATTCAACTCTTCAGCTCATTGGTAGAATCTGCAAGACCTGAACTGGATGTGGCCTATGAGAGAGACACAAAATATCTGGTTGGGGGTCCTCAGGACAGGTTTGAGAACCACTACCTTTGTTGAAAATCTATTTTCAGTACAAACTTTTGGGCCATTTTAACCAAAACAGGATAAGATCATATCCATGATATCTCTGCCTGTACCCCTCAACCAAAATTCTAGCTTATTCATGAATtgaattaagaaaataaattgtaaagtGGTCTAATAGACTGCTGACATGTTActgctacaaaaaaaatatcctcAGATGAATGAATCTGAgatattatgtttgttttgtgccatcacaaaaaataaacattttgcaatCTGA
>XM_043242162.1
CCTCTCTCTGTAGAAAACGTGCTTCAATGACATTCCAGTTACTGATGTAAGGAGTCTAGCGTTAGTCCTGAGGAAGATATAGAAATGTCTTTATACTCTTTATTTCGAGCTGTCAGGACAGAAGTAGTCAAGGGATGTCTCACTCAGCACGTTCAGTCTCTCTACACCAGCTGCCCGAGTTTAGCAGCAGATAAAGCACTTCTCCTCAAATTACGTAAATCTACGGGCTACACCTTTATCAACTGCAAAAAGGCCCTGGAGAAATCCAACAATGACATTACAGAGGCAGAAACCTGGCTGCACGAACAAGCCAAAAAAGAGGGCTGGAGTAAAGCGAATAAACTGGAAGGTCGAAAAGTTAAGGAAGGGCTGATTGGTCTCCTTATGGGCGACAATGCAGCGGTCATGGTTGAGgtgaactgtgaGACAGATTTTGTGGCGAGGAATGAGAAATTCCAGCAGTTGGTGAAGGATGTTGCTTTGTCTGTAATGGCTCATAACagcagcaaaaaacaaaaacagggtATATGAAGGTACATGCCCTTCATTGgcattttcagaaatgtgcaTTTCCTCCACACCTTCTGTGAACTGAGTCTGCTGATCTGTTCTCTGATTCAGAGTGTGCTGTCTTCTGAGGATATTAATAAGCTCGATGTTCCTGAGGGATCCTCACTGGCAGATCAGGTGGCCTTGACTGTAGGGCGGTTAGGTGAGAACATTGGCGTGCGGCGGGTCGTCTCACTTGCTGTGCCCTCTGATTGGTACATCGGCTCATACATTCATGGGGCAGTTACCGAGCAGGTTGGCTTTGAGATGGGGCGCTATGGATCGCTAGTTGTGTTTCAAGGTGGACCAAAGGATGGGACAGACACTCTGGGAAGGAAGTTGGGGCAACATATAGTGGGTGAAGCACCCGTTTCTCTTGGCAACATGGACGATACACCATGTGGTGAAGCTGAGACAAGACTTTTGCCCCAGACCTTCCTCCTAGATCCTAAATATACTGTGGGACAGTTCCTGACTCTACAGAACGCACGTGTGCTAGACTTCATACGCTTCCAGTGTGGAGAGAGCACCAGTCAGGAGGAGTGAACAGTTCTGTTTCGAATGAGAAAAAATGTCTCCttaaagcagtggttctcagACCTGTCCCGGGGACCCCCAACCACACCATATTTTGTATGCCTCCCTCGTTTAACACCCCTGATTCAACTCTTCAGCTCATTGGTAGAATCTGCAAGACCTGAACTGGATGTGGCCTATGAGAGAGACACAAAATATCTGGTTGGGGGTCCTCAGGACAGGTTTGAGAACCACTACCTTTGTTGAAAATCTATTTTCAGTACAAACTTTTGGGCCATTTTAACCAAAACAGGATAAGATCATATCCATGATATCTCTGCCTGTACCCCTCAACCAAAATTCTAGCTTATTCATGAATtgaattaagaaaataaattgtaaagtGGTCTAATAGACTGCTGACATGTTActgctacaaaaaaaatatcctcAGATGAATGAATCTGAgatattatgtttgttttgtgccatcacaaaaaataaacattttgcaatCTGAAA

Function

symbol description
tsfm Predicted to enable translation elongation factor activity. Predicted to be involved in mitochondrial translational elongation. Predicted to act upstream of or within translation. Predicted to be located in mitochondrion. Predicted to be active in mitochondrial matrix. Human ortholog(s) of this gene implicated in combined oxidative phosphorylation deficiency 3. Orthologous to human TSFM (Ts translation elongation factor, mitochondrial).

NR:

description
elongation factor Ts, mitochondrial

GO:

id name namespace
GO:0006414 translational elongation biological_process
GO:0005739 mitochondrion cellular_component
GO:0003746 translation elongation factor activity molecular_function

KEGG:

id description
K02357 tsf, TSFM; elongation factor Ts

RNA

RNA id representative length rna type GC content exon number start site end site
TU68985 False 1488 TUCP 0.45 6 19553319 19555931
TU68987 False 1359 TUCP 0.44 5 19553319 19555931
XM_043242162.1 True 1587 mRNA 0.45 6 19553317 19555942

Neighbor

gene id symbol gene type direction distance location
myl6 myl6,zgc:153867,LOC107585121,LOC105013534,LOC108440770,LOC108271738 coding downstream 1460 19547029 ~ 19551857 (-)
pfkmb pfkmb,LOC107673583,LOC107711051,LOC107585122,LOC107582696,LOC107748387,LOC107667407 coding downstream 52232 19486992 ~ 19501085 (-)
itgb7 itgb7,LOC107711053,LOC107673468,LOC107667391,LOC107582697,LOC107740576 coding downstream 66470 19477718 ~ 19486847 (-)
espl1 espl1,LOC107711058,LOC107673592,LOC107740575,LOC107667390 coding downstream 75761 19465314 ~ 19477556 (-)
pfdn5 pfdn5,LOC107667318,LOC107711057,LOC107740577,LOC107673463 coding downstream 88771 19462391 ~ 19464546 (-)
sumf1 sumf1,LOC107673603,LOC107585117 coding upstream 4620 19560562 ~ 19568042 (-)
si:dkey-197j19.5 efcab12 coding upstream 53858 19609800 ~ 19612454 (-)
uroc1 uroc1 coding upstream 57162 19613104 ~ 19619818 (-)
chchd4b LOC107711045,LOC107673517,LOC107580698 coding upstream 64215 19620157 ~ 19621083 (-)
sec61a1 sec61a1,LOC103023094,LOC108440718,LOC103358725,LOC108436273,LOC102228108,LOC107673516,LOC107384934,LOC106518493 coding upstream 66613 19622555 ~ 19627477 (-)
G46540 mettl7a,LOC107711020,LOC107585130,LOC107740572,LOC107667380,LOC107673452,LOC107711000,LOC107582798 non-coding downstream 155587 19393477 ~ 19397730 (-)
G46509 NA non-coding downstream 310506 19212639 ~ 19242811 (-)
LOC122347223 NA non-coding downstream 401623 19149746 ~ 19151694 (-)
G46477 LOC107673579,LOC107711085,LOC107585184,LOC107733604,LOC107685287,LOC107579827 non-coding downstream 504481 19044628 ~ 19048836 (-)
G46476 NA non-coding downstream 509448 19043616 ~ 19043869 (-)
LOC122347383 LOC107711016,LOC107673510 non-coding upstream 50420 19606362 ~ 19607056 (-)
G46658 NA non-coding upstream 235700 19791642 ~ 19792328 (-)
G46647 LOC107585105,LOC107711036,LOC107673557 non-coding upstream 245301 19801243 ~ 19802266 (-)
G46673 LOC107712079,LOC107584413,LOC107673502,LOC107667352,LOC107721177,LOC107578835 non-coding upstream 278128 19834070 ~ 19838047 (-)
LOC122347207 NA non-coding upstream 321370 19877312 ~ 19880588 (-)
vdrb vdrb,LOC107585146,LOC107673565,LOC107711077,LOC107582718,LOC107667372,LOC107733590 other downstream 403586 19115061 ~ 19149731 (-)
G46478 NA other downstream 497186 19055146 ~ 19056131 (-)
G46423 sec23b,LOC107753900,LOC107752097,LOC107551934,LOC107659946 other downstream 835829 18714174 ~ 18717488 (-)
LOC122347235 NA other downstream 845721 18706623 ~ 18707596 (-)
G46420 LOC107752101,LOC107678225,LOC107581302 other downstream 908183 18644306 ~ 18645134 (-)
tomm6 NA other upstream 285537 19841479 ~ 19842994 (-)
tspo tspo,LOC107721166,LOC107568174,LOC107584504,LOC107667354,LOC107673503 other upstream 287102 19843044 ~ 19847432 (-)
LOC122347177 LOC107584418 other upstream 343730 19899672 ~ 19956730 (-)
mustn1a mustn1a other upstream 442690 19998632 ~ 20000638 (-)
srsf3a LOC107712108,LOC107584442,LOC107673487,LOC107721197,LOC107667402 other upstream 540082 20096024 ~ 20102459 (-)

Expression


Co-expression Network