G46647 (LOC107585105,LOC107711036,LOC107673557)


Basic Information

Item Value
gene id G46647
gene name LOC107585105,LOC107711036,LOC107673557
gene type non-coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056704.1
NCBI id CM032073.1
chromosome length 27473687
location 19801243 ~ 19802266 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>TU69107
GAAATATAAAGAGCTAACATATAAAGAAGGGGAAGGTTcagaatttatgaaaaaatgataTCTTGACGTATAGCTATTTGCAGTAGGGAATGTTCAGTTTGAGTAAAGCTCTGTGTTAAAATCCGTATCACTATCTATCAActttaaatctgattaaaaaGAGTTGCATACAACTTATTTCTTCTGTTGGTGACTCGCCGAATCTCACAATCTTGggaattactgtttttaaaattatttcaagtaaaaacaTCATAtcaactttaaaattaaaagttttatttaataaacacaacaGCAAGGTAAATATGCAAAGCACTTTAAAAGCTATTTAGCTATTTATgcaattaagaaatatattaacTTAATGTGGTCAAGATACACAAACACTTGAAATTAAAGCATGTTGAAAAGATCACTGAGGAAGGCggtttcatcatcatcaccctcaggcccaaaaataaaactccatCCTTCGTAACCAGGTTGTTCACCCATAAAAAAGTCATCATCTATCCGCAGTGAATGAAGCAGCTCCTCTAAACTAAAACGCTGGAATCCCCTTTTACTATGAAATGTCCCTTCATCTGCAAAGGGATTACGGTCCACATCCTCTTTCTTGAACTTTCCCTCCCAGGCCTGATCAGTGTTAGTTAGGTGGTCCAATTCATCATAGGCTCGTCTCTTCTCTCTGTCAGATAGTACTTCATAAGCTGAGAAAAAAACGTAACAAAACCGGATGGTGTTTAAGGGCCAGCCTGTGAAACGCTTTCTTGATCTCTCTTGAAGATGCTGAGTGAGAAACTCCAAGCAGTGAGTAATAGTCACTCAGACACGTACAGCCACACACGCATAACGTTAGTACTATGAATAAATGCTCTGCTGTAGCCATCATCCACCTG

Function

NR:

description
PREDICTED: dnaJ homolog subfamily B member 9-like isoform X2

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU69107 True 902 lncRNA 0.37 2 19801243 19802266

Neighbor

gene id symbol gene type direction distance location
crbn crbn,LOC107711034,LOC107748399 coding downstream 674 19795103 ~ 19800569 (-)
vhl LOC107711035,LOC107673464,LOC107585106,LOC107667384,LOC107748400,LOC107582681 coding downstream 6617 19792750 ~ 19794626 (-)
tatdn2 LOC107673616,LOC107585107,LOC107711037 coding downstream 9793 19786424 ~ 19791450 (-)
ccdc174 ccdc174,LOC107673461,LOC107711012,LOC107585200,LOC107667317,LOC107582683,LOC107748410 coding downstream 16637 19780907 ~ 19784606 (-)
si:dkey-28n18.9 LOC107711013,LOC107585201,LOC107673478,LOC107582684,LOC107748409,LOC107667326 coding downstream 20488 19776312 ~ 19780755 (-)
ppil1 ppil1,LOC107673584,LOC107667353 coding upstream 71707 19873973 ~ 19875768 (-)
LOC122347195 LOC107584484,LOC107673448,LOC107712069,LOC107721173 coding upstream 103585 19905851 ~ 19908068 (-)
c6h1orf159 LOC107673608,LOC107712089,LOC107584440 coding upstream 108728 19910994 ~ 19913842 (-)
kbtbd12 kbtbd12,LOC107673613,LOC107712091,LOC107584421,LOC107721181,LOC107667403,LOC107568198 coding upstream 115787 19918053 ~ 19921278 (-)
p4htmb p4htm,LOC107673589,LOC107712096,LOC107584428,LOC107721183,LOC107667396 coding upstream 126089 19928355 ~ 19934425 (-)
G46658 NA non-coding downstream 8915 19791642 ~ 19792328 (-)
LOC122347383 LOC107711016,LOC107673510 non-coding downstream 194187 19606362 ~ 19607056 (-)
G46540 mettl7a,LOC107711020,LOC107585130,LOC107740572,LOC107667380,LOC107673452,LOC107711000,LOC107582798 non-coding downstream 403513 19393477 ~ 19397730 (-)
G46509 NA non-coding downstream 558432 19212639 ~ 19242811 (-)
LOC122347223 NA non-coding downstream 649549 19149746 ~ 19151694 (-)
G46673 LOC107712079,LOC107584413,LOC107673502,LOC107667352,LOC107721177,LOC107578835 non-coding upstream 31804 19834070 ~ 19838047 (-)
LOC122347207 NA non-coding upstream 75046 19877312 ~ 19880588 (-)
G46803 NA non-coding upstream 165980 19968246 ~ 19968460 (-)
G46816 fkbp5,LOC107584436,LOC107712109,LOC107673486,LOC107721196,LOC107667344 non-coding upstream 252600 20054866 ~ 20115259 (-)
G46836 NA non-coding upstream 325682 20127948 ~ 20129839 (-)
tsfm tsfm,LOC107711018,LOC107585120 other downstream 245301 19553317 ~ 19555942 (-)
vdrb vdrb,LOC107585146,LOC107673565,LOC107711077,LOC107582718,LOC107667372,LOC107733590 other downstream 651512 19115061 ~ 19149731 (-)
G46478 NA other downstream 745112 19055146 ~ 19056131 (-)
G46423 sec23b,LOC107753900,LOC107752097,LOC107551934,LOC107659946 other downstream 1083755 18714174 ~ 18717488 (-)
LOC122347235 NA other downstream 1093647 18706623 ~ 18707596 (-)
tomm6 NA other upstream 39213 19841479 ~ 19842994 (-)
tspo tspo,LOC107721166,LOC107568174,LOC107584504,LOC107667354,LOC107673503 other upstream 40778 19843044 ~ 19847432 (-)
LOC122347177 LOC107584418 other upstream 97406 19899672 ~ 19956730 (-)
mustn1a mustn1a other upstream 196366 19998632 ~ 20000638 (-)
srsf3a LOC107712108,LOC107584442,LOC107673487,LOC107721197,LOC107667402 other upstream 293758 20096024 ~ 20102459 (-)

Expression


Co-expression Network