slc6a11a (slc6a11a,LOC108440580,LOC107673588)


Basic Information

Item Value
gene id slc6a11a
gene name slc6a11a,LOC108440580,LOC107673588
gene type misc
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056704.1
NCBI id CM032073.1
chromosome length 27473687
location 19866559 ~ 19873535 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>TU69154
atatatgtaaaaaaaaaaacccatatcAGATTAGTCTgtaaatcaattatttatacAGACGTGTACAATGTAcaactttttctttctgtctggtCATTTTTCCCAGatgataaaaaagtaatgctttCAAGTAATTTATGCTACTCATGGACAACAAGCACCCATTTTTAGGCTCCAACAACAGGATTTTGTGGGTTATAACCTCTATggctttgtttacttttttccatAGACACAGATTAAGTTTAATCCAGGATATCTGCATTCTGAAATGTGAGTTTTCCATAAAAATCCTTTTGAAGTCTAGGATCATAAAACATCTGTCCAGAAAACCGGGATTATGGTGATATTGTTTCCAACTGATGTTGtcctgccaaaaaaaaatcacagctaaGCCATGTTGTTTATGCTATTTCTGTTTAACCCTTTTTGCCTAACATTTAC
>XM_043242328.1
GAACACGCACACCTACGTGAGCGCTGACAGATACAGGCGTAAACACTGTGAGTATGACAGGCTCCTCCACCAGGCGGACAGGGAACCAGCAGACTGATCTAAGTCCTGAAGAGAGAGGCCAATGGGCAAACAAGATTGAATTTCTGCTGACTGTGGCCGGAGCTATCATTGGGCTTGGAAATGTTTGGAGGTTCCCTTATCTTTGCTATAAAAATGGAGGTGGGGCATTTTTCATTCCATATGTCCTGTACCTGCTCACTTGTGGTATCCCACTTTTTGTGCTCGAGACGTCTTTGGGTCAGTACACCAGTCAGGGAGGCATCACATGTTGGAGAAAGATCTGTCCTCTTTTTGAAGGAATGGGTTATGCCAGTCAAATTATTATTGTCTATGGCTCAATTACCTACATCATCATCATAGTCTGGGCCTTCCTGTACCTTTTCTCAGCCTTCAGTGTGGAACTGCCCTGGGCCAGCTGCAGCAATCTGTGGAACACAGATGCTTGTATAGTGCTTAGTGTGAAGAATTCTAGCTCAGGGTGGACGTCTCCTCTCAACGCTTCTTCCTCTGTGATGGAATTCTGGCGTCACAGAGTTTTGCGACTATCCAGTGGAATACAGCATTTGGGCACAGTAAGGTGGGACTTGGCTCTTATTCTCTTACTTGTTTGGATCTTGATCTACTTCTGCATCTGGAAGGGCGTGAAATCTACTGGGAAGGCAGTCTATTTCACAGCAACATTCCCTTACGTTATGCTCCTGATACTTCTCTTACGAGGGGTCACTTTACCTGGTGCCATCAACGGCATCCACTACTACATGTACCCAGATCTGACACGGCTGGCTGACCCACAGGTATGGATGGATGCTGGGACTCAAATCTTTTACTCTTACGCCATATGTCTTGGATACCTCAGCTCTCTTGGTAGCTACAATCAATATAACAACAACTGTTATAGGGACTCTTTCTACCTCTGCTTGCTGAATAGTGGAACCAGTTTTTTAGGTGGGTTTGCCATTTTCTCTGTTCTGGGACACATGGCACAGGAGCAGGGGGTGGACATATCCCTTGTGGCAGAATCTGGTCCAGGACTGGTGTTTATAGTGTATCCTCAGGCAGTGACAATGTTGCCATGGTCTCAGTTCTGGgctgtgtgtttctttattatGATCATCCTCTTGGGCTTTGACAGTCAGTTTGTTGGACTGGAGAGCATAATGACGTCAGTGACAGACATCTTTCCCACTGTTTTGAGACGTGGCTTTCGAAGAGAGCTGCTGCTTTTAGGGATTTGCCTTGTCTGCTACCTGATGGGCCTCTTTATGATCACAGAGGGTGGTCTGTACATCATTCAGTTGTTTGATCATTATGTGTGTAGTGGAGCCACTCTTCTGTTCCTGGCTACTTGTCAGTCTGTAGCCATTGGCTGGGTATATGGTGCTGACCGATTCTACGAGAACATAGAAGACATGATTGGCTACAAACCCTGGCCCATGATGAAGTATTGCTGGCTCTATGTCACCCCCTCTGTCTGTGTGGGCACCTTTATCTTCTCTCTGGTCAAGTACAGTCCCCTGAAGTTTAATAACACATACATGTATCCGTGGTGGGCATACGCTATTGGATGGTTCCTTGCTGtatcctctctttctctcatcccCATTAACATGATTTACAAACTCTACAAGGGAAACGGTACTTTCTGGGAGCGTCTCCAGTTGGCTTGCACTCCAGCTGAGGATCTACCTCAGTCTCAGAGACCCTCGGCACATCAGTATACTCTGTCATCCTCTACCGACAGAGAAAAGACCCCAGACAACCTTTAATGTTCAACTGCCATTACGTCAATTGtacttatatattaaaaagcagTTCAGTCAATTAGTACCAAAAGGAAAATCGTTTTTgatttcgaaaaaaaaaaaaaaataggtgcAATATGAGGCATATGACAGTTAAATGAtagatttaaaatgctaaagtaAGCAACAGCTGATACAACTGCATATGTCCTTTCTTTTGCATAAAGACAATAGTGCCTTgtttcatataaaacatttatttatggaCTGTAATCTATTAGTGCTGATTGTGAGTCCACCTTTTtacaaaattctttaaaaaaacaatgattattAGTTTCACAGCAAACACCGAATCTTTCCTCTAAAGATGCAGATACCTTTACTATgcaaacacatactgtacataaatgTCTGCTGCTTTAAAGCAGAGCAGCCATGACGAACAAAGCAGTCATGCATTTTGACAGTTGGGTATTCTCAGGGGACAGCTTATTAGAGATTTTCTTTATGATTTTCTCATGCAAGTTAACCTGCTATTAGATAAATTGAGCCTTTaggcattgattttttttgatCCATGGTAAGAGATTTATAGATATCTCTTTCAGTGATATTCAGTGTTTCACATACCTTGTGGGCATTatgtaaaatgtgcttaatCAGCGCAAAGGTTTTTGGAAAATGCAAGTCATGGACAGGGtgatatatgtatttttacagttatatGTTTTTTAGTATGTTGTCtttatagtaattttttaaCTCATATTGTATCTTTTTTAgattcattttacaaataaaaaaaaacagtatatatgtaaaaaaaaaaacccatatcAGATTAGTCTgtaaatcaattatttatacAGACGTGTACAATGTAcaactttttctttctgtctggtCATTTTTCCCAGatgataaaaaagtaatgctttCAAGTAATTTATGCTACTCATGGACAACAAGCACCCATTTTTAGGCTCCAACAACAGGATTTTGTGGGTTATAACCTCTATggctttgtttacttttttccatAGACACAGATTAAGTTTAATCCAGGATATCTGCATTCTGAAATGTGAGTTTTCCATAAAAATCCTTTTGAAGTCTAGGATCATAAAACATCTGTCCAGAAAACCGGGATTATGGTGATATTGTTTCCAACTGATGTTGtcctgccaaaaaaaaatcacagctaaGCCATGTTGTTTATGCTATTTCTGTTTAACCCTTTTTGCCTAAC

Function

symbol description
slc6a11a Predicted to enable gamma-aminobutyric acid:sodium symporter activity. Predicted to be involved in sodium ion transmembrane transport. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be active in neuron projection. Predicted to be integral component of plasma membrane. Is expressed in ectoderm. Orthologous to several human genes including SLC6A13 (solute carrier family 6 member 13).

NR:

description
sodium- and chloride-dependent GABA transporter 2-like

GO:

id name namespace
GO:0006836 neurotransmitter transport biological_process
GO:0016021 integral component of membrane cellular_component
GO:0005328 neurotransmitter molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU69154 False 444 lncRNA 0.33 1 19873092 19873535
XM_043242328.1 True 3054 mRNA 0.41 14 19866559 19873529

Neighbor

gene id symbol gene type direction distance location
frs3 frs3,LOC107673473,LOC107584505,LOC107712068,LOC107667350,LOC107568202,LOC107721202 coding upstream 3597 19850685 ~ 19862962 (+)
si:ch73-15b2.5 LOC107673501,LOC107712080,LOC107584503 coding upstream 24263 19838505 ~ 19842296 (+)
ddi2 LOC107712079,LOC107673502,LOC107667352,LOC107721177,LOC107584413,LOC107578835 coding upstream 28513 19831139 ~ 19838046 (+)
prkcda LOC107673500,LOC107712078,LOC107721176,LOC107667398,LOC107582675 coding upstream 36857 19819837 ~ 19829702 (+)
LOC122347173 LOC107585103,LOC107748397,LOC107582678,LOC107673556 coding upstream 50529 19802686 ~ 19816030 (+)
eno1b eno1b,LOC107721178,LOC107568188,LOC107712086,LOC108440571,LOC105889213 coding downstream 9919 19883454 ~ 19888849 (+)
rereb LOC107673527,LOC107584416,LOC107568186,LOC107721179,LOC107712087,LOC107667365 coding downstream 15987 19889522 ~ 19899661 (+)
LOC122347189 LOC107584426,LOC107712092,LOC107673614 coding downstream 41439 19914974 ~ 19917755 (+)
slc26a6l slc26a6l,LOC107712095,LOC107673476,LOC107584419 coding downstream 48989 19922524 ~ 19928344 (+)
si:ch211-157b11.8 si:ch211-157b11.8,LOC107712072,LOC107584432,LOC107673560 coding downstream 93088 19966623 ~ 19972433 (+)
G46640 NA non-coding upstream 67047 19799012 ~ 19799512 (+)
G46633 NA non-coding upstream 76220 19789698 ~ 19790339 (+)
G46632 LOC107673616,LOC107585107,LOC107711037 non-coding upstream 77709 19787935 ~ 19788850 (+)
G46631 NA non-coding upstream 79357 19786974 ~ 19787202 (+)
G46623 NA non-coding upstream 91407 19774706 ~ 19775152 (+)
G46711 NA non-coding downstream 75693 19949228 ~ 19949668 (+)
G46690 NA non-coding downstream 87674 19961209 ~ 19961985 (+)
G46722 LOC107673562,LOC107584441,LOC105017189 non-coding downstream 91724 19965259 ~ 19966466 (+)
G46726 NA non-coding downstream 118136 19991671 ~ 19999698 (+)
G46731 NA non-coding downstream 132629 20006164 ~ 20007343 (+)
LOC122347202 uqcc2,cf125,LOC107580205,LOC108440614,LOC107667355,LOC106565356 other upstream 20011 19843047 ~ 19846548 (+)
ghrl LOC107585199,LOC107711011,LOC107673481 other upstream 80262 19784177 ~ 19786297 (+)
itpr1a itpr1a,LOC107748403,LOC107711046,LOC107673508,LOC107585177 other upstream 272551 19566011 ~ 19594008 (+)
si:dkey-195m11.8 si:dkey-195m11.8,LOC107585129,LOC107673511,LOC107711061,LOC107667357,LOC107733585,LOC107582701,LOC107711063,LOC107673480,LOC107733603,LOC107582828,LOC107667335,LOC107579851 other upstream 518930 19262584 ~ 19347629 (+)
atp10a atp10a,LOC107673579,LOC107711085,LOC107733604,LOC107685287,LOC107585184 other upstream 1249601 18577178 ~ 18616958 (+)
G46742 NA other downstream 213556 20087091 ~ 20095641 (+)
LOC122346811 rad18,LOC107673612,LOC107657944,LOC107567093,LOC107584494 other downstream 758435 20631970 ~ 20661207 (+)
LOC122347404 rad18,LOC107673612,LOC107657944,LOC107567093,LOC107584494,LOC107712119 other downstream 846882 20720417 ~ 20749398 (+)
oxtra oxtr,LOC107584509,LOC107673460,LOC107658098 other downstream 901463 20774998 ~ 20786533 (+)
G47187 cpt1b,LOC107559523,LOC107710383,LOC107686536,LOC107671150,LOC107599889 other downstream 1901873 21775408 ~ 21777713 (+)

Expression


Co-expression Network