tspo (tspo,LOC107721166,LOC107568174,LOC107584504,LOC107667354,LOC107673503)


Basic Information

Item Value
gene id tspo
gene name tspo,LOC107721166,LOC107568174,LOC107584504,LOC107667354,LOC107673503
gene type misc
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056704.1
NCBI id CM032073.1
chromosome length 27473687
location 19843044 ~ 19847432 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>TU69304
CCAGCGTTTCGGTTGTATTGTTTCTACACGAGAGCAGCCTTTCCTTTAAGCACGCCCACTGTCTGTTACACAAACTTATATCATGATTTCAAGATCACTCCGGTCATAGAAGTCCATCGAGACGGCTCTCTTCACACAACATCAAACTGCGCTTCGACCTGTTAATTCAGGATGTGGATTCCCATGCTGAGTTTGACTGCCCTTCCGCACGTTGGGGGGATATTTGGAGGTATCATCACACGGAAGGAGGTGAAGACCTGGTACACCACGCTCAACAAACCCTCATGGAGGCCACCTAACGCTGCCTTCCCAATAGTGTGGACCACTCTCTACACTGGCATGGGctacgGTTCATACCTTGTGTGGAAAGAGCTTGGAGGCTTTACTCAGGATTCATTGGTACCACTGGGACTTTATGGGTTGCAGTTGGCGCTTAATTGGGCCTGGACCCCCATCTTCTTTGGAGCTCACAAAATTAAACTGGCAATGATAGAGATAGTGATGCTGACTGGCACAGTGGCAGCCACAATGGTGTCTTGGTATCCCGTCAGCCGCACTGCAACACTTCTCATGGTACCATACTTAGCCTGGCTTTGCCTCGCTACCAGCCTCAACTACTGCGTTTGGAGAGACAATCCAGAACCCAAAAAAGACGACTAAAGAGTCCAATAAAATGAACACTATTCTAGCTAACACTGACTAgaacaaaaatcatgtttatgttttatttaaaattttgtaattCTAGCAAAATTCACAATGTGTCTTAATTATAAAAGAaggaaatgcaataaaatgaaaatgcttccGATATATAAACTCACTCCAGCAGTTCACTTACATTCATCATTTTACACAGATCTCCtttattaaataaaatgggtTTCCGTTACTTGGTTTCTTGGAAGGAAATTAGTTAAAAACACTGtacatagattttattttaaacaagctCAGGGCTTAAACCTTTGTGGCTGTGCAGGGGTGGTGGTTTTTATCATATGGTTATCTTTTGTGAACATATTGTATGTACTAGCACAGGCCATATTATCAATATCTGCCAGAGCATTCCCTAGTTTGCATTAACGTGATCACTGTTCTGTACAATTTAATATTACTtgtttcatcaaataaataaatatttttttaaataacaaacataattatgataaattataaaaaacatttattttatacttcaCCACACTAAAGGAATAAACCAGCCAATAAAATTTTCCTAAGGAATAAGTACCTGTATAAGATGAAACCATTCTATTATATCTTCTAAATACACccatctaaaaaaattatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatataatttcttttgtcttaatgataataaaatacagtatacatttgAGCAAAAACAATGTACATAATTCATGGTTTTTATCCAGTGAATACAAAACAAGGGAAATACTGTACTGTTATACAGGAAATGCAAAgagtatttatttgcattttagatTAAAGAGAAAGAATATGCTATAAAAGTAATATTCTGTAAAACTGAATATTGTTTGTACTTATCACATTTCTCAAACTTTAACACAGCTCTCCAGATACCATCAGTTTTACTTCTTGGAAGTCTCTGTTCATCTATCAACATGAAGAGAGCTACTGCTGTTAGAAGTGAAGATTTAAAGAAACACTGTAATCGTTTTATTTGAAAAGGGGAATAAATAAGATCTGCACAGTATGATGattatttttctgctttttcgGGGGTTCCTTCTTCAGGTTTGGAGGAGAAGCGCTCCATTAGTGTCTTCCACAATCCCTTTTTCTCCTCATCTGTCTGCTGCATGTTCcctgcaaaacaaagaaatggcaaaaaaattaaaaaatgtggttTACCTTCTATTAAATCAAAGGATCCTGAAAAATGTACACAAGAATTATAAGAAATATTCTAATATGCCAAATCAATTCATTGTGATGTGTAATGAGTAATGGTtgttgaaaattcagttttaccatcataaagtaaaaacaaaaaaacttttgaatcaAATATATGCAGCATTGGCCAACAGATGCATTACAAAAGCTCAAGAAATCCTTACCTGTTGCCAGTAGCATTCGGCACTCTTCTACTGTTACACCTGTAAAACTTGTATCTTTTGCTCGTGGAAACtgataacaaacaaacaaacaaaccaaaacagtaTTAGGTcaatcaaatcatttaaatgaaatgcattttagaaaaaacatgAGAATGtgctatgcatttttttttgcttcggacaatgaaaatgataaaatataacatttccaAAAATACGGCTTATGTGGATATCTGTGTTATCCATTAAGGTTAGAGGTTTTTAGAAAATGTGGCTCACCTTTTCTTTGTACACATTACTGTTGATGCGCGCCAGACTTTCATACATTTGATCACATTTCTCTGGATCAGAAATCTTAATTGAAACATAAGACAACAGTCAATGGTGCATTAGATATTTGTATTGTTGCATAAactattctgaaaaaaggaTGTTTGCAAGACATAACAGAccgtaaaaaaagaaagtgcacTTGCACCCACaaggattttattattttatttattaattattctaataattgTGGTAAACTCAAGACACGTAATGGaaactttactgtaaaaactAACATATTCTAATAAATTACAGGTTTATGGCTATCTACTGAAAGcattaacacaaaataagaaagaTGACATTTGACTTGCAAGGCAACTCAGAAAAACCGTGCAGTAATTCACTCTTGTAAAAACAATACCTGTGTATTCTCGCCTTCTCGGAAAGCACTAGCAACTCTTTGGCGTAAAAACGTTCCTAAATCTCGCCCCTTCTTTGACTCGTCCTTCGGCCATTCCTCGCATAGTTTTAGAAATCGACGGTATCTGGTGGCAGCCATGTTTTATGCACAGGAATTGTAGGGGCTGTATTTCACAACTGCAGCGTGCTGTAAGTCTGTAAGCCGTGGAGGGTCAAACGCTACGGCGTTT
>XM_043242352.1
AAGCGGCACATGTTTACATGCCTCTCTCTGGTGGCCAGCGTTTCGGTTGTATTGTTTCTACACGAGAGCAGCCTTTCCTTTAAGCACGCCCACTGTCTGTTACACAAACTTATATCATGATTTCAAGATCACTCCGGTCATAGAAGTCCATCGAGACGGCTCTCTTCACACAACATCAAACTGCGCTTCGACCTGTTAATTCAGGATGTGGATTCCCATGCTGAGTTTGACTGCCCTTCCGCACGTTGGGGGGATATTTGGAGGTATCATCACACGGAAGGAGGTGAAGACCTGGTACACCACGCTCAACAAACCCTCATGGAGGCCACCTAACGCTGCCTTCCCAATAGTGTGGACCACTCTCTACACTGGCATGGGctacgGTTCATACCTTGTGTGGAAAGAGCTTGGAGGCTTTACTCAGGATTCATTGGTACCACTGGGACTTTATGGGTTGCAGTTGGCGCTTAATTGGGCCTGGACCCCCATCTTCTTTGGAGCTCACAAAATTAAACTGGCAATGATAGAGATAGTGATGCTGACTGGCACAGTGGCAGCCACAATGGTGTCTTGGTATCCCGTCAGCCGCACTGCAACACTTCTCATGGTACCATACTTAGCCTGGCTTTGCCTCGCTACCAGCCTCAACTACTGCGTTTGGAGAGACAATCCAGAACCCAAAAAAGACGACTAAAGAGTCCAATAAAATGAACACTATTCTAGCTAACACTGACTAgaacaaaaatcatgtttatgttttatttaaaattttgtaattCTAGCAAAATTCACAATGTGTCTTAATTATAAAAGAaggaaatgcaataaaatgaaaatgcttccGATATATAAACTCA

Function

symbol description
tspo Acts upstream of or within primitive erythrocyte differentiation. Predicted to be located in membrane. Predicted to be active in mitochondrial outer membrane. Predicted to be integral component of membrane. Is expressed in several structures, including axial blood vessel; blastomere; hematopoietic system; nervous system; and pleuroperitoneal region. Orthologous to several human genes including TSPO (translocator protein).

NR:

description
translocator protein

GO:

id name namespace
GO:0060319 primitive erythrocyte differentiation biological_process
GO:0016021 integral component of membrane cellular_component

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU69304 True 3060 TUCP 0.35 5 19843044 19847398
XM_043242352.1 False 857 mRNA 0.45 4 19845350 19847432

Neighbor

gene id symbol gene type direction distance location
crbn crbn,LOC107711034,LOC107748399 coding downstream 42475 19795103 ~ 19800569 (-)
vhl LOC107711035,LOC107673464,LOC107585106,LOC107667384,LOC107748400,LOC107582681 coding downstream 48418 19792750 ~ 19794626 (-)
tatdn2 LOC107673616,LOC107585107,LOC107711037 coding downstream 51594 19786424 ~ 19791450 (-)
ccdc174 ccdc174,LOC107673461,LOC107711012,LOC107585200,LOC107667317,LOC107582683,LOC107748410 coding downstream 58438 19780907 ~ 19784606 (-)
si:dkey-28n18.9 LOC107711013,LOC107585201,LOC107673478,LOC107582684,LOC107748409,LOC107667326 coding downstream 62289 19776312 ~ 19780755 (-)
ppil1 ppil1,LOC107673584,LOC107667353 coding upstream 26541 19873973 ~ 19875768 (-)
LOC122347195 LOC107584484,LOC107673448,LOC107712069,LOC107721173 coding upstream 58419 19905851 ~ 19908068 (-)
c6h1orf159 LOC107673608,LOC107712089,LOC107584440 coding upstream 63562 19910994 ~ 19913842 (-)
kbtbd12 kbtbd12,LOC107673613,LOC107712091,LOC107584421,LOC107721181,LOC107667403,LOC107568198 coding upstream 70621 19918053 ~ 19921278 (-)
p4htmb p4htm,LOC107673589,LOC107712096,LOC107584428,LOC107721183,LOC107667396 coding upstream 80923 19928355 ~ 19934425 (-)
G46673 LOC107712079,LOC107584413,LOC107673502,LOC107667352,LOC107721177,LOC107578835 non-coding downstream 4997 19834070 ~ 19838047 (-)
G46647 LOC107585105,LOC107711036,LOC107673557 non-coding downstream 40778 19801243 ~ 19802266 (-)
G46658 NA non-coding downstream 50716 19791642 ~ 19792328 (-)
LOC122347383 LOC107711016,LOC107673510 non-coding downstream 235988 19606362 ~ 19607056 (-)
G46540 mettl7a,LOC107711020,LOC107585130,LOC107740572,LOC107667380,LOC107673452,LOC107711000,LOC107582798 non-coding downstream 445314 19393477 ~ 19397730 (-)
LOC122347207 NA non-coding upstream 29880 19877312 ~ 19880588 (-)
G46803 NA non-coding upstream 120814 19968246 ~ 19968460 (-)
G46816 fkbp5,LOC107584436,LOC107712109,LOC107673486,LOC107721196,LOC107667344 non-coding upstream 207434 20054866 ~ 20115259 (-)
G46836 NA non-coding upstream 280516 20127948 ~ 20129839 (-)
G46838 NA non-coding upstream 302115 20149547 ~ 20152787 (-)
tomm6 NA other downstream 50 19841479 ~ 19842994 (-)
tsfm tsfm,LOC107711018,LOC107585120 other downstream 287102 19553317 ~ 19555942 (-)
vdrb vdrb,LOC107585146,LOC107673565,LOC107711077,LOC107582718,LOC107667372,LOC107733590 other downstream 693313 19115061 ~ 19149731 (-)
G46478 NA other downstream 786913 19055146 ~ 19056131 (-)
G46423 sec23b,LOC107753900,LOC107752097,LOC107551934,LOC107659946 other downstream 1125556 18714174 ~ 18717488 (-)
LOC122347177 LOC107584418 other upstream 52240 19899672 ~ 19956730 (-)
mustn1a mustn1a other upstream 151200 19998632 ~ 20000638 (-)
srsf3a LOC107712108,LOC107584442,LOC107673487,LOC107721197,LOC107667402 other upstream 248592 20096024 ~ 20102459 (-)
G46840 synpr,LOC107658112,LOC107673482,LOC107584506,LOC107712113,LOC107567085,LOC108436247 other upstream 314008 20161440 ~ 20166279 (-)
G46926 NA other upstream 681747 20529179 ~ 20531834 (-)

Expression


Co-expression Network