G46840 (synpr,LOC107658112,LOC107673482,LOC107584506,LOC107712113,LOC107567085,LOC108436247)


Basic Information

Item Value
gene id G46840
gene name synpr,LOC107658112,LOC107673482,LOC107584506,LOC107712113,LOC107567085,LOC108436247
gene type unknown
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056704.1
NCBI id CM032073.1
chromosome length 27473687
location 20161440 ~ 20166279 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>TU69405
GAAGATCTCCATGGTGTTCACTCACTCAGTATCTCTGGGTTTGGCTGGCAGAGGAGCTCAACTCTCCTTCACAGACAGACTCACAGGCTGATGCTTAATCCGTTTCATCAATGTGTATGGTCATATTTGCTCCGCTTTTTGCTGTTTTAGCATTTGCAACATGTGGGGGATACTCTGGCCAGATAATGGTTAAAGTAGAATGTTTGGACAAAACCCAAAGCAACATCAGCATCAGTTTCAACTACCCATTCCGACTCCAGCAGGTACACTTCAGTGCTCCTCTGTGTGAAGGAACCAGGAAAGAGACTCTCTTTCTCGGGGGATTATGCTTCATCTGCACAGTTCTTCGTCACTGTATCAGTCCTAGCTTTTCTCTATTCCCTTTTGGCCACAATTGTTTACATCTTCTACCAGAACAAATACAGAGAGAAGAACAGAGGTCCAGTAGTTGATTTCTTGGTGACTTTAGCCTTCTCTAGCCTGTGGCTGGTAAGCTCAATTGCCTGGGCTAAAACTCTGTCTGGGGTGAAGACAGCCACTGATGTGCATCAAATCCTGCTGTTAATGTCTGCTTGCAGAGCCCAAGAGAACTTATGTGAGGTTTTGCAAGAGCCCATCTGGACGAATCTCAACATGTCTGTGGCCTTTGGTTTTTTGAACTTCATCCTTTGGGCTGGTAATATTTGGTTTGCTTACAAAGAGACAGGTTTGCATAAGTCTTTTCAGCGCTATCCCTCCAGAACACCCTCTGAGAAACGCGGCAGCTTCAGGCAGTACAGTCAAACCAGTTTTGATCAATCCGGAGCTGGTTTTGGCCAAAGGCTCTACAATCAAGGCAGTTTTGACTTATCAAGCGGAGGCTTCAGCCTACCCCAAACCAATCTAGGACAGCCGATGCTGTACCGACAGGTGGGGAGTCCCACATCCAGAGGCCCTCTCATATTTGTTAATGAGAtgtgagagagagcagagcAAGAAACGCTGTTGTTTTCTCAAACGTAAAACAGATCATTTGCCGTTGTAAATGTGATATTTCTATCATGTGATGTAGaaattgtgacatttttgtAGATAACAGTCTGCctactgttatttatttgtttactgtatAATTAAGTGCCATTGAATTGAAAGCTCTTGATATACTAtatacctttttttatatatatatatatatatatatatgagagagagagagagacatatacacatatgcatatgcaaatcGCATATGCAAATGAACATCAAATGCATTTACCATGTCAGATATGGCTTTGTGATATTTCTGATGGAAATTAGCTTATAGTGTGCCTATATTCTCATAGTCtatcttttgtgtttaaatatttcctttatTAAAAGTGCAGTGACAGTACCATGGTGAACACATTGGATTGTAGTACTATGGTACATTCATATAGCCTTTATTTAGAAATGCCATTTCTTTCTCAaggtattttaaagaataacaTGGTATGTAGTGttctttttgttatgttttctatgttttttttatgttctaacATGAATAATGATTAATTACCAGTAGACGCCTGGGAAAACCAACTGGCTTGAGTCAGAGAATGGCATGGAAACCCTGTGGACCGAGGATGATGTCCAGTCGGagatctttttaatgaatcattttgtcTAACCATACagagaaatgcatgcaaa

Function

symbol description
synpr Predicted to be located in membrane and synaptic vesicle. Predicted to be integral component of membrane. Predicted to be active in synaptic vesicle membrane. Is expressed in epiphysis; female organism; forebrain; and male organism. Orthologous to human SYNPR (synaptoporin).

NR:

description
PREDICTED: tubulin alpha chain, testis-specific-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU69405 True 1677 TUCP 0.40 5 20161440 20166279

Neighbor

gene id symbol gene type direction distance location
slc6a22.1 slc6a13,LOC107584422,LOC107567077,LOC107721195,LOC107712063,LOC108413697 coding downstream 36179 20116875 ~ 20125261 (-)
rab44 NA coding downstream 65923 20084841 ~ 20095517 (-)
trub2 LOC107712105,LOC107673580,LOC107584434,LOC107721199,LOC107569306,LOC107568203,LOC107584444 coding downstream 87943 20070910 ~ 20073497 (-)
hdhd3 hdhd3,LOC107712106,LOC107584439,LOC107673581,LOC107667329 coding downstream 91233 20068870 ~ 20070207 (-)
slc2a11a slc2a11a,LOC107712104,LOC107673621,LOC107584427,LOC107667316,LOC102307538 coding downstream 104685 20051004 ~ 20056755 (-)
LOC122347299 LOC107683669,LOC107709781,LOC107701556,LOC107709782,LOC107704729,LOC107585716,LOC107739789,LOC107585717,LOC107585718 coding upstream 70995 20237274 ~ 20238660 (-)
hemk1 LOC107750260,LOC107712066,LOC107657999,LOC107567089,LOC107584453 coding upstream 257432 20423711 ~ 20431177 (-)
cav3 cav3,LOC107749619,LOC107584510,LOC107750282,LOC107658089,LOC107577493,LOC107673475 coding upstream 616165 20782444 ~ 20786555 (-)
gpr61l LOC107658083,LOC107750281,LOC107749617,LOC107567083,LOC107584511,LOC107673479 coding upstream 628967 20795246 ~ 20799151 (-)
parp3 parp3,LOC107749614,LOC107750280,LOC107658076,LOC107673445 coding upstream 633815 20800094 ~ 20805651 (-)
G46838 NA non-coding downstream 8653 20149547 ~ 20152787 (-)
G46836 NA non-coding downstream 31601 20127948 ~ 20129839 (-)
G46816 fkbp5,LOC107584436,LOC107712109,LOC107673486,LOC107721196,LOC107667344 non-coding downstream 46181 20054866 ~ 20115259 (-)
G46803 NA non-coding downstream 192980 19968246 ~ 19968460 (-)
LOC122347207 NA non-coding downstream 280852 19877312 ~ 19880588 (-)
G46842 NA non-coding upstream 7259 20173538 ~ 20174291 (-)
LOC122347561 NA non-coding upstream 73523 20239802 ~ 20240436 (-)
LOC122346791 slc6a11a,LOC107673588,LOC108440580 non-coding upstream 79429 20245708 ~ 20247348 (-)
G46870 NA non-coding upstream 113012 20279291 ~ 20399625 (-)
G46872 NA non-coding upstream 120136 20286415 ~ 20287172 (-)
srsf3a LOC107712108,LOC107584442,LOC107673487,LOC107721197,LOC107667402 other downstream 58981 20096024 ~ 20102459 (-)
mustn1a mustn1a other downstream 160802 19998632 ~ 20000638 (-)
LOC122347177 LOC107584418 other downstream 204710 19899672 ~ 19956730 (-)
tspo tspo,LOC107721166,LOC107568174,LOC107584504,LOC107667354,LOC107673503 other downstream 314008 19843044 ~ 19847432 (-)
tomm6 NA other downstream 318446 19841479 ~ 19842994 (-)
G46926 NA other upstream 362900 20529179 ~ 20531834 (-)
mdfic2 LOC107667017,LOC107713509,LOC107584472,LOC107680698,LOC107599432 other upstream 1182340 21348619 ~ 21355381 (-)
tardbpb tardbp,LOC107713527,LOC107555974,LOC107666995,LOC107680706,LOC107561006 other upstream 2573693 22739972 ~ 22750947 (-)
G47535 LOC102793276,LOC101471251,LOC100701884,LOC102312415,LOC102199361 other upstream 2955504 23121783 ~ 23163157 (-)
G47590 NA other upstream 3233070 23399349 ~ 23400502 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_033084 synpr coding NC_007117.7 CM002890.2 41223204 ~ 41229787 (-)
grasscarp (Ctenopharyngodon idella) CI01000340_10117381_10122090 SYNPR coding CI01000340 null 10116722 ~ 10122090 (-)