G46879


Basic Information

Item Value
gene id G46879
gene name NA
gene type non-coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056704.1
NCBI id CM032073.1
chromosome length 27473687
location 20340040 ~ 20389396 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>TU69489
GTCGGTACGGAGGAAATCGTTTAGAAGCTGAAAGAGCGGGAAACTGTCCCAGCTCTCGGGAGACTGGATCTCAAGAGCAGCATCCATATCAACTCCATAGAGCGAAAGGAAGTTCTCAGCGTGCTCCACCATCAGGTCTGACCACCATGCAAAGGCCTTCATAGTCCAGGAAAggtaaaaagaatgaaaagaagtaGAGAGttagaaaaatgacaaaattattggGTAATCTCAGGAAGAAAAAGATTGTAAGCTGGTTAAATGTCTGCCATATGTGATTCACATATTCACTTTGTATATCTGCTTTCAAAGTAATGGTTCTTCATTTGATTAGTAAGAGTTCAAATGAAGAGAAGTTTTTGATATGAATGGTTCATATTTTGCCTCAGTGATAGAagttattacattaattaatcaaatagaTAAGGCTTTCAAGTAACCAGTTTACAAGGTTAATGGTGATCAGTTAAGCCATTATGGACTTAAAACATTAGACAATTTATAAATTTGCAACACAGAAAATTCTgctatatatatagatatataattatatcatcCAAAACAAAGTCTAAATATTGAGGAAAAACATTTCACCATAAAAAGAAATTTATGAATCTTCTATAAAAGGTTGCTTATCTTAGGAATTGAGGCCCTCGAAAGAAACACATTAATCCAAATAAGAGAAAATCTAAAACTCCTTTAATAAGAGGGCCTGACATtcaagttgtaaaaaaaaaattacaatacacCTTTAATCTTGTGTTGCAAATGTGTGCATATTTGTGACCAGATGTAATTTTTCCTGTATCAGGTTAATTCTCAGTGGAGTCAAGATGCCAGAGGAGGTGCAGTTCTCATGCAAGTGAGGTAGAAATCCCTGCATGCTTTTGCCCTCCAAATGGAAGATGTAGTTCAACCGTTCACATCACTGCATCCCTacctttgggatggggatgtgTCTTGCGATCATGCAACATTGCCGCCCCTAATACACCAAAGACTGCAAGCAAGCAGCAGACTTCTTTACTTGGCAATGCATATGATTTGCCTGAATATTTCTTCTTTAATCTCTCAAAGTGACCATAAATTTTGAGCCTGTAGTGGGATATTGAGCAGGAGTTTCTTAGATCAATCAGGCTTGCTTGCAGTCTTGGCATGAAACACTTTTCTTCTAATTAAAACAACCGACCAGTGATAAACCCATTCAGGGAACTGATCAGCCTTTTTAAGAGGCTTAATCCTTCCCTTTGGTTGCATGCTCTTTTTTACCCCTTTAAACCCACAGCTTCAAAGAGCCCCAAAATATTTCCCCCAAATCCGTTCTGCTACCTAGGGACAGCAAGCTCTAAGACCAGACTTACCACAGAACTTACCTGCAGGCTTCACAAATAACACTTGAAAACCTACACTGGTCATAACGTTGGGACCAACAAATATAGCATTTGCTAGTGTAGCAGGGCAATGCATACGGCTGAGCTTAACCAGACAGACAAGTAGAACGTGGGGTAGAGAGCGATAAGAGACGCCAAATCCAAGCAGCCCATGAATCCTTCCCCAAGGCCTTTCTTGCTAATCTATGAGCGCTGGGTAGGAGTTAACATTAAAACCTTCTTGACTGAATACAAAAAtcatattgtaatttaaataagcaAGAGCGGCCCTGGGAAGAGGGCAATGTTATGACATTGGTTTGGTCCTTTTAAGGAATTGTGAAGTCCAAGTACACTAGCAGTAGGGAACACTAATTGGGAAAAGTTAGGGTGACACAACTAGCGTGGGGGGTGGGTAAATGTAAACATTCCCCTGGAAGCAAAGGAATCATTGAGCATTGACCTTGCCAGTCGGGGACACAAGCCTTACAAGTTTGAAGGAGACTTGACGGGCACAATGCTGAGGAATTAAGACGAACCCATGTCAGATGCAGCAAAACATTCCCTCACTTTGTGAGGATCGGGACATTACAAGGGAAGGGAACCCTTCATAGCTCATGCACAAGCCAGTAAGGGGcttttttttcactgcattCATTTGACCACATACCTCTTTTCCTGCAACATCACCATGGAGTGAATGGTGAGGAAAAATATGAACACGTAGAAGGTGATGTATGTGCAAAGTGTTAATGTATGCACAAAATGTTGATTACAAACAATTTTTCCCAAAACGTTTGGATAAAAAGTAAGATTTACTTCAAATGGAAGTTATAAAGTAATTACTTCGGTTTAAATGGCTTTCCATATTATAGTTTTACAAAGTATGATCTACAGATGTTTATACGATAATGTCTTGgagttaaaactaaaatattttgctCATTTGTGAATCAGTGTGAGGAGGTAGATACTTTCCATAAATAAAGAGACCAACTCTTTCAATCTTAATTTCATTACGTTCTTTAAGCATCGTCTTGCCCCATTCCACCCAGACATAACAGAAAAGCCCTTAACTGCGTGAATC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU69489 True 2457 lncRNA 0.39 2 20340040 20389396

Neighbor

gene id symbol gene type direction distance location
LOC122347299 LOC107683669,LOC107709781,LOC107701556,LOC107709782,LOC107704729,LOC107585716,LOC107739789,LOC107585717,LOC107585718 coding downstream 101380 20237274 ~ 20238660 (-)
slc6a22.1 slc6a13,LOC107584422,LOC107567077,LOC107721195,LOC107712063,LOC108413697 coding downstream 214779 20116875 ~ 20125261 (-)
rab44 NA coding downstream 244523 20084841 ~ 20095517 (-)
trub2 LOC107712105,LOC107673580,LOC107584434,LOC107721199,LOC107569306,LOC107568203,LOC107584444 coding downstream 266543 20070910 ~ 20073497 (-)
hdhd3 hdhd3,LOC107712106,LOC107584439,LOC107673581,LOC107667329 coding downstream 269833 20068870 ~ 20070207 (-)
hemk1 LOC107750260,LOC107712066,LOC107657999,LOC107567089,LOC107584453 coding upstream 34315 20423711 ~ 20431177 (-)
cav3 cav3,LOC107749619,LOC107584510,LOC107750282,LOC107658089,LOC107577493,LOC107673475 coding upstream 393048 20782444 ~ 20786555 (-)
gpr61l LOC107658083,LOC107750281,LOC107749617,LOC107567083,LOC107584511,LOC107673479 coding upstream 405850 20795246 ~ 20799151 (-)
parp3 parp3,LOC107749614,LOC107750280,LOC107658076,LOC107673445 coding upstream 410698 20800094 ~ 20805651 (-)
grm2a grm2a,grm2,LOC107673619,LOC107657935,LOC107567094,LOC107749615,LOC107750271,LOC107584497 coding upstream 417367 20806763 ~ 20841391 (-)
G46872 NA non-coding downstream 52868 20286415 ~ 20287172 (-)
LOC122346791 slc6a11a,LOC107673588,LOC108440580 non-coding downstream 92692 20245708 ~ 20247348 (-)
LOC122347561 NA non-coding downstream 99604 20239802 ~ 20240436 (-)
G46842 NA non-coding downstream 165749 20173538 ~ 20174291 (-)
G46838 NA non-coding downstream 187253 20149547 ~ 20152787 (-)
G46883 LOC107673597,LOC107712118,LOC107584452,LOC107567071,LOC107657992,LOC107567092,LOC107750261 non-coding upstream 30369 20419765 ~ 20422730 (-)
G46922 NA non-coding upstream 108826 20498222 ~ 20692163 (-)
G46929 srgap3,LOC107657972,LOC107750258 non-coding upstream 164637 20554033 ~ 20599135 (-)
G46934 srgap3,LOC107657972,LOC107712067,LOC107750258,LOC107673571 non-coding upstream 174955 20564351 ~ 20706849 (-)
G47004 NA non-coding upstream 546026 20935422 ~ 20935654 (-)
G46840 synpr,LOC107658112,LOC107673482,LOC107584506,LOC107712113,LOC107567085,LOC108436247 other downstream 173761 20161440 ~ 20166279 (-)
srsf3a LOC107712108,LOC107584442,LOC107673487,LOC107721197,LOC107667402 other downstream 237581 20096024 ~ 20102459 (-)
mustn1a mustn1a other downstream 339402 19998632 ~ 20000638 (-)
LOC122347177 LOC107584418 other downstream 383310 19899672 ~ 19956730 (-)
tspo tspo,LOC107721166,LOC107568174,LOC107584504,LOC107667354,LOC107673503 other downstream 492608 19843044 ~ 19847432 (-)
G46926 NA other upstream 139783 20529179 ~ 20531834 (-)
mdfic2 LOC107667017,LOC107713509,LOC107584472,LOC107680698,LOC107599432 other upstream 959223 21348619 ~ 21355381 (-)
tardbpb tardbp,LOC107713527,LOC107555974,LOC107666995,LOC107680706,LOC107561006 other upstream 2350576 22739972 ~ 22750947 (-)
G47535 LOC102793276,LOC101471251,LOC100701884,LOC102312415,LOC102199361 other upstream 2732387 23121783 ~ 23163157 (-)
G47590 NA other upstream 3009953 23399349 ~ 23400502 (-)

Expression


Co-expression Network