G46883 (LOC107673597,LOC107712118,LOC107584452,LOC107567071,LOC107657992,LOC107567092,LOC107750261)


Basic Information

Item Value
gene id G46883
gene name LOC107673597,LOC107712118,LOC107584452,LOC107567071,LOC107657992,LOC107567092,LOC107750261
gene type non-coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056704.1
NCBI id CM032073.1
chromosome length 27473687
location 20419765 ~ 20422730 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>TU69504
TTGATTCTcacttttattacaaaatgaagGATTGCTCAtccataaatacatacaaactcCACATTGTGGGCATagaaaaaaatggattaaaatagtccaaaaaaaaaaaaaaaaaaaaattcactgcaTTTCACTTTCAGGGAAAGAAACGATTCCGGTCCAGGCAGCGCAGTGACTAAGCTCGCCTTTGAAGTATGCTGAAGACCAAGCTACGTTATGTGCTTCTGGTGAGCTCAGTGTTTCAGACAAGCTGCGTATTCTCATTTTGAGCGGTTCCTAAAGGGTTCACGTGACCTGTACAAAAGTTTCAAGAACGTTATATTCATCTCAGACCCCAAGCCTGTGGTTTAACCTCACACTTGTAACGGTATGACACAAAGGCTGAGTCACTTGCTGCTTCAcgagtcaatttttttttttttgaatcgaATGACTCAGTCGCACTTGGGTATATCTATCAATTTATTGATCTATTAAGATAGACTTGCTGACCATCAAAAACCCGCTCCAGAAACAACAGTCACTCTTCAAGTGATTAACACTGGTTTTTGACCCAAACCTCTGATAGGGACCGTGTATTTAACTTGCCGGCTACAAAATATCAGCATCCAGCTCGTGATTGGCCTCGGTGTGCATTTCCACGGCAATGTCAGAGCTGGAAAGGGTAATCCTGAAGATACTGCAGTACCGGTCTGGGTAGAGGCAGGCTCTCTGTGCAAGTGGTGTGTTTGTTGATTACCAGGCGAGTGAGATGTTGCAAAGAAGGAAAGGCTTGAGGACGATGCATCGGCCGTTTGAGTTTTAGCAACACCGCACATTCCTTGGGGGCCAGCGAAGTTACGTGATCCGACTCCTCGGTCTTTTCCTCCTCCCCTTTGTTCCTGGAGCCCACGTAGTGCTGCACGAGGCTGGGGACATCTGGGAAGGACTGCAGACGAGATCTGGCCGGAGAACTGGAGTCCAGACGGAAACGGCCGAGACTGTATTCGATGCGAACGTTCGTAGGCCCGCGACCAGTTTTAACGGACAGTGTCAACATATAGAGAGGGTGGCTGCTGTCCCGTATTAGGAAAGTACCCTCCGAGGCCCCCTGTAGGACAGCATGGGCCTCACTGGCAGAGATGGCACCCCAGTACCaacctggaaaaaaataagagGGATTATTAATACCAAGTTCTTATTGGAGACTTTATACGgaaaaaaaaagggatgaaatTGTAGATAAAGTCACAAAAGTTCATTCTACAAAACAGGTGCATTTAGAGGCccttaaaaattattatttttttagcatgccCCCACACCGGTTTCCAAATTCTCATTGCTGtgtatttcagtaaaaaaaaattatttaaatttaaattagaaattatattcctaaataaaaagtaacaatttaCCTTTTAATCACAGCttaatttaacaaatgaataaaattgattaaaaaccaTTATAGAAAAGGGGAGTTTTGTAGAATGACCCTTGATTTGTGGATTTGTAGatttatgaatgaatacatgaatatatCCTAACtgccatttttaacaataaataataaaaattgttgttGCTGCTATTATTATAgctgtaacatttaaaatttgtattgtaCCTGAGGCATCCAGATAGGAGAAATTATTGGAGATAGATCTGAAATCTTTGCTGGGGTCCCATAAGGTAACGGTTGCATGGATGCAGCGAGGAGAGGAGAAAGTCACCACCGGAAACCTGACCATTGGATCAGCGGTATCTTGCAAGTGAGCAGGccCCTTGAACGCACAGAATCATTGTGAAGATGTCTGGTTTGATTTTTGCCGGATTCCTTAAAGTTTTCTTTGTTCCTGGTGTTTTTACTCGGACTTGCAAAAACAAGCTGGTCTTCCTCGAGCGACGGCGAACAGTTCAGAGATATTTCTTAAGCGCAGGAAGGTTGTCGAACAGCGGCGGGACTCTGTCGCCGACGGTCATATAAGCTCTTATGCGGGTTTGTTTAACAAACTACGCGAGTAGATAACACTGACATGGTTCTCAAAAACGAGCGGCGTTTCCGTTCAGCTCGTGTCCTAAAACTGAACAAGAAGCGGAACACTGCAGGGTTTGGCTTGTTCACTTCGTCTGACTTCCCAGAACTGGTTTTCTGAGAATCCCCCCGTGTTTAGCGCCTCTGACGCCATCGACAGCACAGCTCTGTGAAACCCACAGAATCAATCCCCTCTTCTTTGTCGTTCAAGCATACGGCAGTCTCGTGAGTAATGAACTAGCGCTGGAATGATCCTTGAATGACTCATTTGGGAGTTTTATTATGGTGATGGTGGGTAATTGCTTCCTGATGTTTGTGATTGACGTCTGAGGACGAAAACGGCGTTTCTCGTGAAACCGCATGTCTAGC

Function

NR:

description
PREDICTED: cytokine-inducible SH2-containing protein-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU69504 True 2389 lncRNA 0.43 2 20419765 20422730

Neighbor

gene id symbol gene type direction distance location
LOC122347299 LOC107683669,LOC107709781,LOC107701556,LOC107709782,LOC107704729,LOC107585716,LOC107739789,LOC107585717,LOC107585718 coding downstream 181105 20237274 ~ 20238660 (-)
slc6a22.1 slc6a13,LOC107584422,LOC107567077,LOC107721195,LOC107712063,LOC108413697 coding downstream 294504 20116875 ~ 20125261 (-)
rab44 NA coding downstream 324248 20084841 ~ 20095517 (-)
trub2 LOC107712105,LOC107673580,LOC107584434,LOC107721199,LOC107569306,LOC107568203,LOC107584444 coding downstream 346268 20070910 ~ 20073497 (-)
hdhd3 hdhd3,LOC107712106,LOC107584439,LOC107673581,LOC107667329 coding downstream 349558 20068870 ~ 20070207 (-)
hemk1 LOC107750260,LOC107712066,LOC107657999,LOC107567089,LOC107584453 coding upstream 981 20423711 ~ 20431177 (-)
cav3 cav3,LOC107749619,LOC107584510,LOC107750282,LOC107658089,LOC107577493,LOC107673475 coding upstream 359714 20782444 ~ 20786555 (-)
gpr61l LOC107658083,LOC107750281,LOC107749617,LOC107567083,LOC107584511,LOC107673479 coding upstream 372516 20795246 ~ 20799151 (-)
parp3 parp3,LOC107749614,LOC107750280,LOC107658076,LOC107673445 coding upstream 377364 20800094 ~ 20805651 (-)
grm2a grm2a,grm2,LOC107673619,LOC107657935,LOC107567094,LOC107749615,LOC107750271,LOC107584497 coding upstream 384033 20806763 ~ 20841391 (-)
G46881 twf2,wdr82,LOC107712117,LOC107673495,LOC107750262,LOC107567090 non-coding downstream 170 20360821 ~ 20419595 (-)
G46870 NA non-coding downstream 20140 20279291 ~ 20399625 (-)
G46877 NA non-coding downstream 25623 20331412 ~ 20394142 (-)
G46879 NA non-coding downstream 30369 20340040 ~ 20389396 (-)
G46875 NA non-coding downstream 41530 20328084 ~ 20378235 (-)
G46922 NA non-coding upstream 75492 20498222 ~ 20692163 (-)
G46929 srgap3,LOC107657972,LOC107750258 non-coding upstream 131303 20554033 ~ 20599135 (-)
G46934 srgap3,LOC107657972,LOC107712067,LOC107750258,LOC107673571 non-coding upstream 141621 20564351 ~ 20706849 (-)
G47004 NA non-coding upstream 512692 20935422 ~ 20935654 (-)
LOC122347045 gnat1,LOC101072412,LOC107750245,LOC107657824,LOC107385205,LOC107666988 non-coding upstream 714743 21137473 ~ 21142766 (-)
G46840 synpr,LOC107658112,LOC107673482,LOC107584506,LOC107712113,LOC107567085,LOC108436247 other downstream 253486 20161440 ~ 20166279 (-)
srsf3a LOC107712108,LOC107584442,LOC107673487,LOC107721197,LOC107667402 other downstream 317306 20096024 ~ 20102459 (-)
mustn1a mustn1a other downstream 419127 19998632 ~ 20000638 (-)
LOC122347177 LOC107584418 other downstream 463035 19899672 ~ 19956730 (-)
tspo tspo,LOC107721166,LOC107568174,LOC107584504,LOC107667354,LOC107673503 other downstream 572333 19843044 ~ 19847432 (-)
G46926 NA other upstream 106449 20529179 ~ 20531834 (-)
mdfic2 LOC107667017,LOC107713509,LOC107584472,LOC107680698,LOC107599432 other upstream 925889 21348619 ~ 21355381 (-)
tardbpb tardbp,LOC107713527,LOC107555974,LOC107666995,LOC107680706,LOC107561006 other upstream 2317242 22739972 ~ 22750947 (-)
G47535 LOC102793276,LOC101471251,LOC100701884,LOC102312415,LOC102199361 other upstream 2699053 23121783 ~ 23163157 (-)
G47590 NA other upstream 2976619 23399349 ~ 23400502 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000340_10252718_10253859 NA coding CI01000340 null 10252718 ~ 10254453 (+)