G46929 (srgap3,LOC107657972,LOC107750258)


Basic Information

Item Value
gene id G46929
gene name srgap3,LOC107657972,LOC107750258
gene type non-coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056704.1
NCBI id CM032073.1
chromosome length 27473687
location 20554033 ~ 20599135 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>TU69574
ccataatgtaattaatcagatttttctaaataatcagaatctaattttaaaaaatatataaattatttattatttaataaataaatttaataaatgtataataatttttttttttttttaaataatactaaccAAAGCAAACCATTTCCATCACGCTccttggatatatatatatattagcaacgatatattagcattataatattttagaacaaCACTCTATATCAAACAATGTTGTGGAATTTCCTTCTCATACATACTGCTTTCAGCTATAGATTCAAAAAAGTCTGCAAAAGTTACTCCACTTTCTATGACCTGAGTGCTAAACTCCTCATTCATAGTACTGAGCTCAGTTTAAGCCACAGCTGGCTCTAATGGAggaattatgacattttttagTAACAACAAAATCCAGCTAAAGTCTAGAGCTCACCAGTACTCCTCTCCTCCAGTCATACATTTCTCATAAACAGGGCCGTCCAGCTCACGCAGGCTGGGGAAGATGACCTCGTGGTGGATGATGATGGTCTTGATGACTTCATTAACATGAGCCTGACAGGCCACAGGGTCCTGACCCTCCGGGATGGGCATCAAAGTGGGTCCAAAACAGATGGCAAGGTTATATGGGTCCATCATGTTCTCGTCGCTGTACTGAGACAGA

Function

symbol description
srgap3 Predicted to be involved in negative regulation of cell migration. Predicted to act upstream of or within signal transduction. Predicted to be active in cytoplasm. Orthologous to human SRGAP3 (SLIT-ROBO Rho GTPase activating protein 3).

NR:

description
PREDICTED: SLIT-ROBO Rho GTPase-activating protein 3 isoform X2

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU69574 True 661 lncRNA 0.36 2 20554033 20599135

Neighbor

gene id symbol gene type direction distance location
hemk1 LOC107750260,LOC107712066,LOC107657999,LOC107567089,LOC107584453 coding downstream 122856 20423711 ~ 20431177 (-)
LOC122347299 LOC107683669,LOC107709781,LOC107701556,LOC107709782,LOC107704729,LOC107585716,LOC107739789,LOC107585717,LOC107585718 coding downstream 315373 20237274 ~ 20238660 (-)
slc6a22.1 slc6a13,LOC107584422,LOC107567077,LOC107721195,LOC107712063,LOC108413697 coding downstream 428772 20116875 ~ 20125261 (-)
rab44 NA coding downstream 458516 20084841 ~ 20095517 (-)
trub2 LOC107712105,LOC107673580,LOC107584434,LOC107721199,LOC107569306,LOC107568203,LOC107584444 coding downstream 480536 20070910 ~ 20073497 (-)
cav3 cav3,LOC107749619,LOC107584510,LOC107750282,LOC107658089,LOC107577493,LOC107673475 coding upstream 183309 20782444 ~ 20786555 (-)
gpr61l LOC107658083,LOC107750281,LOC107749617,LOC107567083,LOC107584511,LOC107673479 coding upstream 196111 20795246 ~ 20799151 (-)
parp3 parp3,LOC107749614,LOC107750280,LOC107658076,LOC107673445 coding upstream 200959 20800094 ~ 20805651 (-)
grm2a grm2a,grm2,LOC107673619,LOC107657935,LOC107567094,LOC107749615,LOC107750271,LOC107584497 coding upstream 207628 20806763 ~ 20841391 (-)
tex264a tex264a,LOC107584457,LOC107749613,LOC107673607,LOC107750253,LOC107657929,LOC107567068 coding upstream 243721 20842856 ~ 20900191 (-)
G46883 LOC107673597,LOC107712118,LOC107584452,LOC107567071,LOC107657992,LOC107567092,LOC107750261 non-coding downstream 131303 20419765 ~ 20422730 (-)
G46881 twf2,wdr82,LOC107712117,LOC107673495,LOC107750262,LOC107567090 non-coding downstream 134438 20360821 ~ 20419595 (-)
G46877 NA non-coding downstream 159891 20331412 ~ 20394142 (-)
G46879 NA non-coding downstream 164637 20340040 ~ 20389396 (-)
G46875 NA non-coding downstream 175798 20328084 ~ 20378235 (-)
G47004 NA non-coding upstream 336287 20935422 ~ 20935654 (-)
LOC122347045 gnat1,LOC101072412,LOC107750245,LOC107657824,LOC107385205,LOC107666988 non-coding upstream 538338 21137473 ~ 21142766 (-)
G47122 zgc:113054,LOC107584471,LOC107713510,LOC107666963,LOC107750276,LOC107599438,LOC107680730,LOC108424032 non-coding upstream 729297 21328432 ~ 21329671 (-)
G47262 LOC107573738,LOC107657877,LOC107713495,LOC107666997,LOC107750247,LOC108436274 non-coding upstream 1003154 21602289 ~ 21663492 (-)
G47283 NA non-coding upstream 1201143 21800278 ~ 21801032 (-)
G46926 NA other downstream 22199 20529179 ~ 20531834 (-)
G46840 synpr,LOC107658112,LOC107673482,LOC107584506,LOC107712113,LOC107567085,LOC108436247 other downstream 387754 20161440 ~ 20166279 (-)
srsf3a LOC107712108,LOC107584442,LOC107673487,LOC107721197,LOC107667402 other downstream 451574 20096024 ~ 20102459 (-)
mustn1a mustn1a other downstream 553395 19998632 ~ 20000638 (-)
LOC122347177 LOC107584418 other downstream 597303 19899672 ~ 19956730 (-)
mdfic2 LOC107667017,LOC107713509,LOC107584472,LOC107680698,LOC107599432 other upstream 749484 21348619 ~ 21355381 (-)
tardbpb tardbp,LOC107713527,LOC107555974,LOC107666995,LOC107680706,LOC107561006 other upstream 2140837 22739972 ~ 22750947 (-)
G47535 LOC102793276,LOC101471251,LOC100701884,LOC102312415,LOC102199361 other upstream 2522648 23121783 ~ 23163157 (-)
G47590 NA other upstream 2800214 23399349 ~ 23400502 (-)
LOC122347542 grm8b,LOC107659486,LOC107698172,LOC107752348,LOC107575719,LOC107598887,LOC107753676 other upstream 3054054 23653189 ~ 23656456 (-)

Expression


Co-expression Network