G47122 (zgc:113054,LOC107584471,LOC107713510,LOC107666963,LOC107750276,LOC107599438,LOC107680730,LOC108424032)


Basic Information

Item Value
gene id G47122
gene name zgc:113054,LOC107584471,LOC107713510,LOC107666963,LOC107750276,LOC107599438,LOC107680730,LOC108424032
gene type non-coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056704.1
NCBI id CM032073.1
chromosome length 27473687
location 21328432 ~ 21329671 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>TU69869
ATAGCAGGCCCAGTCTTCACGGTTATCTTTTTACCATGGGGCGACGTGTCAAATATAGGCTGTGCAAAGTCTTTCAAGTAAGGCTCGAGCTCGCAGGCAATAAGTTGGCCATTCTCTGGTAAGGCCTCCGCCATCGACAAGGCTCCATATCCTGTGAACATTCCTATCTCTAAAACCCTCTTGGCTTTGCTCATGTGGACCAGCATCTTCAACACCTGACTACCTGTCCAGTGATGCACGTAACAGGAAGTCTGAATAAAGTTTTCCCATCCTCATGTACCTTATTCCAGTCATGAGAGACTGATTTccttcagaaaataaataagcagatTTATGATGCATATActgcatatgcatgcatgtcatAAAGCATTACAACGATGCATAATTGCATGTGACTGGCAGTCAAACTAAACTTGCACTGCACAAACCCTACACAAAGGCGCATCATTCACAAAACTTCTAATCTGCAACCCACACAGAGTTTCAGGTAAATAGTTACCTATACAACTCAGCCAACGGTTCACTTTCCTGACTGCTCATTTGTTCGAGGTAACCATCCAATCCACAAGCAATGTCCAGGGCCTTCTGAAGGTTATCGCGCAGCTCAGCGGGAACATTTGCATTGGTCTCTGCGATCTCTTTAGCCTTCAGCAGGTACTCAACAACGAACTCCACAGGAGTATCTGAA

Function

symbol description
zgc:113054 Predicted to enable oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor and quinone binding activity. Predicted to be involved in fatty acid biosynthetic process. Predicted to act upstream of or within methylation. Is expressed in several structures, including digestive system; epidermis; immature eye; notochord; and ovary.

NR:

description
uncharacterized protein LOC541322

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU69869 True 691 lncRNA 0.45 2 21328432 21329671

Neighbor

gene id symbol gene type direction distance location
eevs eevs,LOC107599439,LOC107713488,LOC107750277,LOC107666977,LOC107584516,LOC106565742 coding downstream 2755 21322282 ~ 21325677 (-)
frmd4ba LOC107667002,LOC107680702,LOC107584470,LOC107599419,LOC107750236 coding downstream 25581 21262902 ~ 21302851 (-)
trnt1 trnt1,LOC107713507,LOC107667021,LOC107750237,LOC107680704 coding downstream 71003 21253706 ~ 21257429 (-)
avpr2b.1 si:dkey-178o16.4,LOC107599421,LOC107750238,LOC107584469,LOC107667040,LOC107713506 coding downstream 74861 21250404 ~ 21253571 (-)
lrrn1 lrrn1,LOC107713505,LOC107584468,LOC107667032,LOC107680720,LOC107750239 coding downstream 120069 21197505 ~ 21208363 (-)
foxp1b foxp1b,LOC107584474,LOC107750235,LOC107667004,LOC107599416,LOC107680700,LOC107713512 coding upstream 66114 21395785 ~ 21925135 (-)
LOC122347027 sephs1,LOC107686537,LOC107671154,LOC107719963,LOC107710385 coding upstream 451722 21781393 ~ 21787683 (-)
LOC122347024 LOC107710382,LOC107686534,LOC107560047,LOC107719970,LOC107671152,LOC107599867 coding upstream 460271 21789942 ~ 21795952 (-)
prok2 prok2,LOC107584519,LOC107713490,LOC107666985,LOC107599435,LOC107732044,LOC107680728 coding upstream 607131 21936802 ~ 21938944 (-)
rybpb rybpb,rybp,LOC107732045,LOC107599415,LOC107680715,LOC107713516,LOC107584476,LOC107667020 coding upstream 638436 21968107 ~ 21990701 (-)
LOC122347045 gnat1,LOC101072412,LOC107750245,LOC107657824,LOC107385205,LOC107666988 non-coding downstream 185666 21137473 ~ 21142766 (-)
G47004 NA non-coding downstream 392778 20935422 ~ 20935654 (-)
G46934 srgap3,LOC107657972,LOC107712067,LOC107750258,LOC107673571 non-coding downstream 621583 20564351 ~ 20706849 (-)
G46922 NA non-coding downstream 636269 20498222 ~ 20692163 (-)
G46929 srgap3,LOC107657972,LOC107750258 non-coding downstream 729297 20554033 ~ 20599135 (-)
G47262 LOC107573738,LOC107657877,LOC107713495,LOC107666997,LOC107750247,LOC108436274 non-coding upstream 272618 21602289 ~ 21663492 (-)
G47283 NA non-coding upstream 470607 21800278 ~ 21801032 (-)
G47297 NA non-coding upstream 675109 22004780 ~ 22004982 (-)
G47306 gxylt2,LOC107713518,LOC107666964,LOC107584478,LOC107732048,LOC107599434,LOC107680697 non-coding upstream 717439 22047110 ~ 22047735 (-)
G47334 NA non-coding upstream 1012451 22342122 ~ 22411439 (-)
G46926 NA other downstream 796598 20529179 ~ 20531834 (-)
G46840 synpr,LOC107658112,LOC107673482,LOC107584506,LOC107712113,LOC107567085,LOC108436247 other downstream 1162153 20161440 ~ 20166279 (-)
srsf3a LOC107712108,LOC107584442,LOC107673487,LOC107721197,LOC107667402 other downstream 1225973 20096024 ~ 20102459 (-)
mustn1a mustn1a other downstream 1327794 19998632 ~ 20000638 (-)
LOC122347177 LOC107584418 other downstream 1371702 19899672 ~ 19956730 (-)
mdfic2 LOC107667017,LOC107713509,LOC107584472,LOC107680698,LOC107599432 other upstream 18948 21348619 ~ 21355381 (-)
tardbpb tardbp,LOC107713527,LOC107555974,LOC107666995,LOC107680706,LOC107561006 other upstream 1410301 22739972 ~ 22750947 (-)
G47535 LOC102793276,LOC101471251,LOC100701884,LOC102312415,LOC102199361 other upstream 1792112 23121783 ~ 23163157 (-)
G47590 NA other upstream 2069678 23399349 ~ 23400502 (-)
LOC122347542 grm8b,LOC107659486,LOC107698172,LOC107752348,LOC107575719,LOC107598887,LOC107753676 other upstream 2323518 23653189 ~ 23656456 (-)

Expression


Co-expression Network