G47535 (LOC102793276,LOC101471251,LOC100701884,LOC102312415,LOC102199361)


Basic Information

Item Value
gene id G47535
gene name LOC102793276,LOC101471251,LOC100701884,LOC102312415,LOC102199361
gene type misc
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056704.1
NCBI id CM032073.1
chromosome length 27473687
location 23121783 ~ 23163157 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>TU70437
GCGAGGGGTGCCAGAGACCTTCAACGAGGCCAAGCCCATAGGCTTCACCATGTACACCACCTGCATCATTTGGCTTGCTTTCATCCCCATTTTCTTCTGGGACGTCGCAGTCGACGGAAAAGATGTACATACAAACGACCACGCTGACCATCTCGGTGAGTCTGAGCGCGTCTGTGTCTCTGGGGATGCTCTACATGCCGAAGGTCTATGTGGTGCTCTTCCACCCGGAGCAGAATGTGGCCAAACGCAGCACTCGCAGCCTAAAAGCTGTGGTCACTGCCGCCACCATGTCTAACAAGTTCAACCCCAAGGCCAGCCTGCGCCCAACGGAGAAGCCAAGTCGGAGCTGTGCGAGAACCTGGAAACTCAGGGACTCAGCCCTAAACAAACGTACATCAGCTACAGCAACCACGCAATCTAGGTAAGTGATAAAAGGCCACTACCAAATCCCAGAAGTGACCCCTGGAAGAACGCATTTCAAGATAAATCACTCTCACGTTATGTCACTTATGGAAGTGAGATGGCGGATGGTTGGAAGACCCCCACAGACATGTTTCCATTAATGAAGCTTATGTGAAGTCACACAGGGAGCATCTGGGGAGGCCGAGACTGTTGAGACGGTGTGTCGGAATGACGGTCTGTCACCCAGACTATTCCATTACAGCTTGCTCTATCTATTCCAGATGTCATTGTTAAAGTGATACACACTAATTAAGGACAACATGTCAGTGTCCGCTGTTTCATTGACGCTAACACTCTGTggtggctttaaaaaaaagaagaagaaaaaaaagtatttaaaaaaaatcatttggagCTTTTTCCTCTTGTTTTCTCCTTGGTGATGACAACAGCAAAGACAGTGACCATTGTTTACAGATGTTAAGCATGCTGGTTTTGACATCCTgtgctgtgttgtttttttctttctttatttcttttacttttttcaacaaaaaaaaaagagaacctTCTGGAATGCTGTTGAACTATGTTGCTGTATTGTTACCTCACCATGGGCCTTGTGAAACTGTTGAAGATGTACGAAGTGCTCTTTGGAGTAATGTTTGCTTGTGCATAAGTACACACCTTTTGAGGAACTCAAATTTGCCCTATTGTCAAAATGTGCTATAGTTGTCACAGCCACCTGTGCAAATCTGAAATCACAATTTAGAAATGGTGTGACGTTCGTTCGAAAGCTCGAGATATCGGAACCAATGTTAACCGGACCGGTGCGGCACGAGTAAGTCAATTTCATACAAACACAGCTATCGAAGACTCTTCTGTGGAAATTGGAATAATCACCACTCTCAAGTAAACCAACAGTTCCGAGAAGCTCGGATGATGGAGTAGATGGCAGGATCCTGTATTCATATCTGGAAATGTCAGGTGATAGAGAGAGACAAGCTGATTTGTCTCTTTTAGATGTTTGTGAATTTAAGATTCAGTTCTTATGATTTCTCCTctcttctttgtttttgcacTGTTTGTGCTGCAGAATAAAATGTCTATGTTGACCGTGATAAATGGCAACTTAATGTGTGTTCCTGATTGCTAATGTTTGCTTTTCAtcctaaaagagaaaaaaaaaacgtcagaaACAGTGCCTGAATTaaagtatttgtaaaataaGACATATGAGGTATGTGAAGCATGttaatttttatacataaataatttctaataaagAAATTTTTCAAAACTCATCGTTTTCTGAAAAATCCTCTCTGCAGTGTTGGTGAAGTGTTGGATGTTTATGTGACGTGGCTTGGGCGTACTGCAGTATGGTTTCTGGgttgttctgggtggttgctagggcattgcttGGCTGTTACTATGGTGTGTGCTGTAAATCTGTGGGATTTTACTTGCTTTTCCACCGAAAGTCGGATTGCTTAGAAAAGTGATAGCGCAGCTCTCTTTTATAACCCACACATTTTGAGGGAAGATTCGGGTCTGTGGCTAAAATTTGGCTGCAGGAAGAAAAATCTAACAAACAGTAATACTTATACaagcataataattataataatagacAAACCCTAATCTGAATAAGTAGATTCAATTctattgctttttaatttaaaaattttgtatAAAACCCATGAAACATGCAGTATTTAAAACAACCAAGTTGTATTGTCTCTTATTGTGCTAATACACTAttgtatctattttttattaatattctgagTCAAAAACACAAGAGGAGTGTTCTCAtgcttaaatgaaatataaaatattctcttttgtgcatttaaatttcCTTCAAAAAAGCACTTAGTCTTCAAGATTAGGACACAACCTGACACAAAAGCACGGtggaaattaaaacaaatgtcatttgacaaatttttattttacttttttcttttttttacgaCAGGCAGCCGTCTTTCATAATGTGCATTTCAGAAGGCCCATTATTAAGTGTGAGATGTATCTGCCATCAGTGGCAACAGCGCAGAGGAAGACAGGTGCTATAAAGAAAAGCACCGGTGCTTTGACTCTGTGATGTATAACGGTGTAGCTACCAGACATAAATTATAGGCCATGTTAGGCTTATTTAGGTCTGTCTCGAATACAGCACATAAAACAGGGACTTGATTGGAACGCTACTCCATCTCTCTGACAGTGCTTAGAAACTGATGGAAAGAGCGTACAGTGAAGGGTGGATCAGGATGCTGTGCAAAGGAGGTCATGTTCTCTGAGATCAATACAtctatgtgtgagtgtgtgagtgtgtgtgagagagagagagattgtaaTTTGTCAGCTGAAGAAGATTCTTCCTTATTTATGAGttcaaatttatttgaattttaatgaaatgtactgtatcaaatataaacattgtaaattattattattctctataaatataattattataaagtactaatattatttagtgtgtgtgtgtgtatacagtatatgcatttatataattgtaatatttatattgctgCTTTTATAGcgaaatatgaatattattgtGTCATCCTGAACTGTACATTATCTTGATCATTACACAGCTGCTGAATaagtaaatctaaaatataaataaataaaatgaaaacttgaa
>TU70438
CTACCCTACTCTCACCAAGacgaaaaacaaaagtacaaaaaggcGCTCACTCCTTACCTGGTGTGTCTAACATGAAATTACTACGTGCAAAAATGTGTGTCGTACGTCCTAACCCTGTTCTCTTCTCCCCAAGAGAAAGGACAGAATTCTTAGGCAACAATATCAACCAAGATGCCGGAACTGAATGAGTTAGACATTAGCACACACcagaaaactgaaacaaatcaaTTGTGTCACGAAACACCTGCGTATACTGAACAATGAGCACTGAGCTACAAGCTCTGAGCTACCGACGTAACAAGCAGCGCGCTTTTTAAACTGCCGGAAGACGTCGGGTTGGCTGCACCGGCGACTCCGGAACGATGATGGACAGCCACATCCTCCAATCAGCAAACGCGTACCTGAAAGAACGAGAGATAGGGGGCGGAAGAGAGACCGCTCTcggggaaaacaaacaaaaggacCACACAAACAACCAGACACACACGGCACGTAACATCCTCTCACACGAAAATCCACCAACATAACTGCTTGATTTGTGCATATTTGTCTCCCGATTCAGaggatccattgATGTACATACAAACGACCACGCTGACCATCTCGGTGAGTCTGAGCGCGTCTGTGTCTCTGGGGATGCTCTACATGCCGAAGGTCTATGTGGTGCTCTTCCACCCGGAGCAGAATGTGGCCAAACGCAGCACTCGCAGCCTAAAAGCTGTGGTCACTGCCGCCACCATGTCTAACAAGTTCAACCCCAAGGCCAGCCTGCGCCCAACGGAGAAGCCAAGTCGGAGCTGTGCGAGAACCTGGAAACTCAGGGACTCAGCCCTAAACAAACGTACATCAGCTACAGCAACCACGCAATCTAGGTAAGTGATAAAAGGCCACTACCAAATCCCAGAAGTGACCCCTGGAAGAACGCATTTCAAGATAAATCACTCTCACGTTATGTCACTTATGGAAGTGAGATGGCGGATGGTTGGAAGACCCCCACAGACATGTTTCCATTAATGAAGCTTATGTGAAGTCACACAGGGAGCATCTGGGGAGGCCGAGACTGTTGAGACGGTGTGTCGGAATGACGGTCTGTCACCCAGACTATTCCATTACAGCTTGCTCTATCTATTCCAGATGTCATTGTTAAAGTGATACACACTAATTAAGGACAACATGTCAGTGTCCGCTGTTTCATTGACGCTAACACTCTGTggtggctttaaaaaaaagaagaagaaaaaaaagtatttaaaaaaaatcatttggagCTTTTTCCTCTTGTTTTCTCCTTGGTGATGACAACAGCAAAGACAGTGACCATTGTTTACAGATGTTAAGCATGCTGGTTTTGACATCCTgtgctgtgttgtttttttctttctttatttcttttacttttttcaacaaaaaaaaaagagaacctTCTGGAATGCTGTTGAACTATGTTGCTGTATTGTTACCTCACCATGGGCCTTGTGAAACTGTTGAAGATGTACGAAGTGCTCTTTGGAGTAATGTTTGCTTGTGCATAAGTACACACCTTTTGAGGAACTCAAATTTGCCCTATTGTCAAAATGTGCTATAGTTGTCACAGCCACCTGTGCAAATCTGAAATCACAATTTAGAAATGGTGTGACGTTCGTTCGAAAGCTCGAGATATCGGAACCAATGTTAACCGGACCGGTGCGGCACGAGTAAGTCAATTTCATACAAACACAGCTATCGAAGACTCTTCTGTGGAAATTGGAATAATCACCACTCTCAAGTAAACCAACAGTTCCGAGAAGCTCGGATGATGGAGTAGATGGCAGGATCCTGTATTCATATCTGGAAATGTCAGGTGATAGAGAGAGACAAGCTGATTTGTCTCTTTTAGATGTTTGTGAATTTAAGATTCAGTTCTTATGATTTCTCCTctcttctttgtttttgcacTGTTTGTGCTGCAGAATAAAATGTCTATGTTGACCGTGATAAATGGCAACTTAATGTGTGTTCCTGATTGCTAATGTTTGCTTTTCAtcctaaaagagaaaaaaaaaacgtcagaaACAGTGCCTGAATTaaagtatttgtaaaataaGACATATGAGGTATGTGAAGCATGttaatttttatacataaataatttctaataaagAAATTTTTCAAAACTCATaaaaaaaaaaaaaaaaaaaa

Function

NR:

description
PREDICTED: metabotropic glutamate receptor 4-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU70437 True 3085 lncRNA 0.39 3 23133302 23163157
TU70438 False 2178 TUCP 0.43 5 23121783 23153123

Neighbor

gene id symbol gene type direction distance location
igfn1.1 LOC107713542,LOC107667005,LOC107678150 coding downstream 914 23096476 ~ 23120869 (-)
LOC122346420 igfn1.3,LOC107713484,LOC107666972,LOC107708174,LOC107561018,LOC107678151,LOC107549306 coding downstream 26177 23083243 ~ 23095606 (-)
igfn1.4 LOC107667046,LOC107713541,LOC107549308 coding downstream 60754 23051176 ~ 23061029 (-)
LOC122346646 LOC107713540,LOC107667049,LOC107549308 coding downstream 74170 23038696 ~ 23047613 (-)
zgc:66479 LOC107667045,LOC107713539,LOC107549324,LOC107680725,LOC107561004,LOC107576326 coding downstream 83678 23033990 ~ 23038105 (-)
LOC122347531 LOC107716719,LOC107661465,LOC107753586,LOC107696249,LOC107574055 coding upstream 118011 23281168 ~ 23307044 (-)
LOC122347543 adal,LOC107753575 coding upstream 212369 23375526 ~ 23379971 (-)
LOC122347540 LOC107753702,LOC107716657,LOC107576377,LOC107678284,LOC107554944,LOC107661513,LOC103033419 coding upstream 217162 23380319 ~ 23382508 (-)
LOC122347539 csk,LOC107753654,LOC107661474,LOC107554945,LOC107716707,LOC107678300 coding upstream 223819 23386976 ~ 23388877 (-)
im:7151449 NA coding upstream 667688 23830845 ~ 23837357 (-)
G47523 NA non-coding downstream 106170 23014864 ~ 23015613 (-)
G47508 LOC107680689,LOC107561011,LOC107713535 non-coding downstream 209750 22911471 ~ 22912033 (-)
G47435 NA non-coding downstream 236950 22883663 ~ 22884833 (-)
G47412 NA non-coding downstream 411155 22697899 ~ 22710628 (-)
G47334 NA non-coding downstream 710344 22342122 ~ 22411439 (-)
G47863 NA non-coding upstream 882627 24045784 ~ 24048986 (-)
G47860 NA non-coding upstream 895417 24058574 ~ 24059263 (-)
LOC122346445 NA non-coding upstream 912839 24075996 ~ 24077407 (-)
LOC122347497 NA non-coding upstream 917761 24080918 ~ 24088360 (-)
G47904 NA non-coding upstream 1125817 24288974 ~ 24361963 (-)
tardbpb tardbp,LOC107713527,LOC107555974,LOC107666995,LOC107680706,LOC107561006 other downstream 370836 22739972 ~ 22750947 (-)
mdfic2 LOC107667017,LOC107713509,LOC107584472,LOC107680698,LOC107599432 other downstream 1766402 21348619 ~ 21355381 (-)
G46926 NA other downstream 2589949 20529179 ~ 20531834 (-)
G46840 synpr,LOC107658112,LOC107673482,LOC107584506,LOC107712113,LOC107567085,LOC108436247 other downstream 2955504 20161440 ~ 20166279 (-)
srsf3a LOC107712108,LOC107584442,LOC107673487,LOC107721197,LOC107667402 other downstream 3019324 20096024 ~ 20102459 (-)
G47590 NA other upstream 236192 23399349 ~ 23400502 (-)
LOC122347542 grm8b,LOC107659486,LOC107698172,LOC107752348,LOC107575719,LOC107598887,LOC107753676 other upstream 490032 23653189 ~ 23656456 (-)
G47627 NA other upstream 512115 23675272 ~ 23676792 (-)
rap1gapb si:dkey-166d12.2,LOC107708062,LOC107655773,LOC107666145,LOC107729774 other upstream 804364 23967521 ~ 24038319 (-)
ngfb LOC107708095,LOC107596860,LOC107729735,LOC107666043,LOC107554201,LOC107685837 other upstream 1316668 24479825 ~ 24517032 (-)

Expression


Co-expression Network