G25615


Basic Information

Item Value
gene id G25615
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000004
NCBI id null
chromosome length 17451736
location 1592380 ~ 1596013 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU28903
AAAAAACTTCCATCCGGTTGCAGTCTCATATAGCTGGATCTTGGTGGCCCTGGCCACCATGTCTAGAGCTGCACTGGTGGGCATACTCCTAGCAAAACCTCTTACTCCTGTGTGCTGGAAGTAAGGAATGCAGAAGATGTTTGCAGCAATAACGGCAACTGAGTCGGAGGGGGTAACAAAGAATCCATGCTTCCCAAGGATCATATTACGGTCACCGTCACCATCAAAAGCTGCTCCAAAGTCATACTGTCCACTCTTCATTGTTTCAACAAGGTCAGCGGCATAGGTCAAGTTAGGGTCTGGGTGGCAACCTCCAAAGTTCTCCAGAGGTACACAGTTAATGGCTGAATTTGCAGGGGAGCCCAGTTCCTCACACAGGATCTTCTTCACATACGGCCCAATCACTCCATGCATTCCATCTAAACGGATTTGTATGTGGTTGTCTCCTGATAGCAACTCCTTCAAAACAGCAAAATCGAAGATGTTCCTCAGAGAGTTGGCATAAGATTCAATTGGGTCCACAATTTCTACTGTAAAAGGTTTGAATTTGTTCTCCAGGTCGAAGGATTGCTTGCCAATAGTCCCCAGATCGACTCTGAGTTCAGGACAGATGGCATACTCCTCTATGATTCTGCTCATTTGGAAGACTTTGCTTGTGACCGCCTCTGGTGCTGGACCTCCATTGGCAGTATTAAATTTGATGCCGAAGTCTCCGTCAGGTCCTCCAGGGTTGTGACTGGCTGTAAGAATAATCCCTCCAATGGCTTTGATCTTCCTGATCAGACAAGACACAGTCGGCGTCGACATGATGCCATTCTGACCAATCACAACACGACCCACCCCATTAGCAGCAGCCATCTGCACTATGACTTGAATGGCAGTCGAATTGAAGTAGCGTCCATCTCCACCCACCACCATAGTGGAGCCCTGCCTGTCCCGCAGGTCGATGGAGGAGAAGATGCACTGAATGAAGTTGTGCAGGTAGTTTTTTTTAGACTGGAAAACATGGACCTTCTTCCTCAGGCCGCTGGTTCCAGGCCTCTGGTCGGGGTATGGAGAGGTAGGCAATGTCAGCACTTGCAAGGGACTATCGTTCATTGTTGAGGAAACGTTGAGGAAGAATGAAGGAAAAGCTGTTATCTCCTCTCAGAGGAGAGAGAGAGTGACGGGAGGAGAAGG

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

RNA

RNA id representative length rna type GC content exon number start site end site
TU28903 True 1179 lncRNA 0.32 7 1592380 1596013

Neighbor

gene id symbol gene type direction distance location
CI01000004_01554696_01564701 NA coding downstream 27679 1554656 ~ 1564701 (-)
CI01000004_01440447_01443088 NA coding downstream 149088 1439771 ~ 1443292 (-)
CI01000004_01404265_01425424 NA coding downstream 166956 1404265 ~ 1425424 (-)
CI01000004_01394018_01397517 TMEM125B coding downstream 194863 1393969 ~ 1397517 (-)
CI01000004_01352499_01377500 SLC1A7A, SLC1A7 coding downstream 214865 1352073 ~ 1377515 (-)
CI01000004_01605140_01622364 NA coding upstream 8539 1604552 ~ 1622364 (-)
CI01000004_01626984_01627238 NA coding upstream 30203 1626216 ~ 1627238 (-)
CI01000004_01758554_01762415 NA coding upstream 162409 1758422 ~ 1762415 (-)
CI01000004_01773383_01774888 INSL5B coding upstream 176915 1772928 ~ 1774942 (-)
CI01000004_01814534_01821755 CMPK1, CMPK coding upstream 217769 1813782 ~ 1821755 (-)
G25613 NA non-coding downstream 1525 1590620 ~ 1590855 (-)
G25612 NA non-coding downstream 2146 1589770 ~ 1590234 (-)
G25611 NA non-coding downstream 2616 1589536 ~ 1589764 (-)
G25610 NA non-coding downstream 3753 1588283 ~ 1588627 (-)
G25609 NA non-coding downstream 4165 1587555 ~ 1588215 (-)
G25569 NA non-coding upstream 6771 1602784 ~ 1603291 (-)
G25559 NA non-coding upstream 33333 1629346 ~ 1669982 (-)
G25625 NA non-coding upstream 53975 1649988 ~ 1664053 (-)
G25688 NA non-coding upstream 85958 1681971 ~ 1682530 (-)
G25689 NA non-coding upstream 87360 1683373 ~ 1684639 (-)
G26788 NA other upstream 1678420 3267683 ~ 3275721 (-)
G27746 NA other upstream 3582214 5178227 ~ 5203724 (-)
CI01000004_05617072_05627369 NA other upstream 4024370 5616644 ~ 5628289 (-)
CI01000004_06539836_06541252 NA other upstream 4938814 6538904 ~ 6541252 (-)

Expression


Co-expression Network