G25187


Basic Information

Item Value
gene id G25187
gene name NA
gene type unknown
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000004
NCBI id null
chromosome length 17451736
location 1604542 ~ 1616470 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU28416
CCAGTAATACTTTATTGAAAAAAAAAAATAGAAAAATGAAATGACAAGTATGACAGTATTCATCCACTCTCCATTCTTTCTTTCTCTTTCTTTCTTTCTTTCTATCTGTCTGTCTCTGTCTTAGATATTGCAGTCAAATACAACAAATATATCTCCTGTGATATTAAGGCACTTCTGCATTTTACCTTTCCAAAAATAAATTTAGGTTAAGTGCTAAGTGTAGGTTGTTGTGTTAACCAATAAGAATACACTGTATAAACAGAGTGTTTTGGAGGTAGGTGATTAACTAGCAATGATTTATAGAGAAAGTAACATGCATGATAGTTCTTAATCCCCGGGTATACTTCACTTTCCGCGCCCGCGCATCTTTTAAAGTATACTAAACCACGGATGCGCGCTGATGACTGAGTTCGACACATGCACAGTGCGCTGTTGCATGCCCACCGGGATGTGCGGCCAGCCGAAAATTACGTCATGCGGACGGTGCACAAACGCAGACGGCCGAAGTATACCCCGGGCTTTAGTATAATGAGGAAGGTATTGAAAAATATAAAATTAATCTGAATTCTGTAGGTGAAACTGATGTGATGAAAGGAAGTTAGATGCTTTCTCTAGAGTGGAGAAACGTAAACTCCTCAGTCAGGCTGCTGAAGTCCACTCTGTTTTCTGGGGCTTGACTCCAGCATCTCTGCATCTGAGTGTACACCATTTCAGGGCATGAATCTGGGCGTGGCATCCTCCAGCCTTTCTCAAGAGCTTCTACCAGTCTGGCCATAGTCATCTGCCCTTGAGACCGACCAATCATCTTCAGGAAAACCTGTGGAGGGCTGCTCTCACGGTCACAGTAGGTCATAATTTCATGGAGGGTGACCCCAAATGACCAAACATCAGATGCCTTGTAGAACTTCCGATTAATCAGACACTCTGGAGCATACCAGTACACAGGACTGTCCTGTTCTTCTGTCACTTTGTAATAATCCTTATCTTCTTTGATGCTCTTTGTCAGACCAAAATCCCCAATCTTCACAAGTGATTCATTCTCCACTAAGATGTTCCTCGCTGCTAGATCCCTGTGGATGTAGTTCTGAGATCCCAGGTATTCCATTCCCTGACATATCTGAAGAGCATAAAGCAGCAGTCTCTTTTGTCCAATGTTGGATTTGTTACGGGGCAGGTATTCTTTCAGACTGCCGGCGGGCAAATACTCCATAATGAGCTTGATGTTTATTCCTCCTTCTTCATTGCAGATGCCTTTGTATTTGACGATATTTTCATGGAAGAGGTTTCTGATGGTGTTGATCTCTCTCCTCAGGTTGCTGCTCTCATTCTCTGATTTCAGAGATTTGACAGCCACCAGCTCACCTGTCTGATCTCCATTAGGATCATACATACACAGTTCCACCATCCCAAAGTTACCCTCTCCAAGTTTTCGGATTTTTTTGAGGAATCTCCTCTTGAAATCTGCAGGATCAGTCTCCTGTGGAGGAATTACCCCTGATATAAGTTCCTGCTCTCGTTGCTCTTTGATGCGGCCCAGCTCTCTTACTATGGCTCTGAAAAACGGTCTCTTCCGGGGGTCATAGTTCATGCACTGGGAGATCAGATCAGCCAGTTCACTGATGCTGGGAGTGACCAGAGTACCGCACACCTCATAGAATCGCTCTTTCTCTGACAGCTTCATTTTAGACAGGGGCACCTCGCCATTGTAGCAGATCTCCCACAACGTGGTCCCAAACCCCCACTTGTCTGCTGCAACGCTTAATGCTTTGGGGTTATTAACACACTCTGGAGCGATCCAGGGGATCCTTTCAATACACTCCCTTCGGCTGAGCACAGAAATGGACAGTCCAGGATCACTCAGTTTAATGAAAGGACCACCCTGTCCTTCCAGACCATCCAGCTTCAACAAGATGTTTTTAGAGCAGACATAGCCGTGGACAAGCTTATTATCCTCCAAATAACTGAGGACACTGGAAAGCTGCTCCGCAACTTGAAACTTCCAAGAGGATGTGAGATCAGAGCGATGGTTTCTCATGAACAGATCCAGAGGGCCGTGCTGAACAAACTCCTCCACCATAAGAATGTCCATGCTGTGCATGCATATGCCATACATCAGAACCATGTGTTTATGGGATATCTTTTGCATTATACTGACTGTGTCCAGGAAGGCAGAAATGTAATTGTGTCCTGCTCCCAGAACCTTCAGAACCACATCCACCACCTCATGGCCTGGAAAACCTTCATCATCCTCATTTCTCAGCTTCAGCTTCCCAGAATAGATGTTTGTGTGAGTGCCTTGACCCAGGTGTTTCTCCTGGGTAATATCCTCTTTGAGGATCTTATGGAAGATTGTAGGATGACTGTAGGAAGAGCGTGATGATTCTGAATCTTTTCTGGTTATCATGACGAGGTTGGATTGCTCTTTTGGCTGGGGTGGGCAGCCACGCTCAAGTCTTAAGCTGGTGTGGTCTGTTGTGAGACACTGGCCAGATAGGTGGTCCGTCAGCTCCCTCAGAGTGGGTTTCACAATATCTGTCCCAGTCAGGAGGTAGCCCTGTGCGCACACTTCAATCTGGAAGTTCTTGAAGGATTTGGTGATGCCGCCATGACAA

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

RNA

RNA id representative length rna type GC content exon number start site end site
TU28416 True 2612 TUCP 0.51 15 1604542 1616470
Loading

Neighbor

gene id symbol gene type direction distance location
CI01000004_01592461_01602968 NA coding upstream 1574 1592356 ~ 1602968 (+)
CI01000004_01578642_01584658 NA coding upstream 19734 1578566 ~ 1584808 (+)
CI01000004_01501609_01545725 NA coding upstream 58423 1501609 ~ 1546119 (+)
CI01000004_01446583_01461259 NA coding upstream 142626 1446203 ~ 1465922 (+)
CI01000004_01426795_01429440 EBNA1BP2 coding upstream 175102 1426795 ~ 1429440 (+)
CI01000004_01623427_01625278 LEPROT coding downstream 6957 1623427 ~ 1625340 (+)
CI01000004_01670419_01699238 PDE4BB, PDE4B coding downstream 53949 1670419 ~ 1699238 (+)
CI01000004_01715623_01744133 SGIP1B, SGIP1 coding downstream 99153 1715623 ~ 1744133 (+)
CI01000004_01750322_01754593 TCTEX1D1 coding downstream 133852 1750322 ~ 1755323 (+)
CI01000004_01757017_01757201 NA coding downstream 140547 1756990 ~ 1757864 (+)
G25192 NA non-coding upstream 18922 1585266 ~ 1585620 (+)
G25226 NA non-coding upstream 33664 1570619 ~ 1570878 (+)
G25222 NA non-coding upstream 159146 1445065 ~ 1445396 (+)
G25143 NA non-coding upstream 292951 1311043 ~ 1311591 (+)
G25242 NA non-coding downstream 87787 1704257 ~ 1704558 (+)
G25248 NA non-coding downstream 144060 1760530 ~ 1762263 (+)
G25253 NA non-coding downstream 153355 1769825 ~ 1770177 (+)
G25254 NA non-coding downstream 153925 1770395 ~ 1770704 (+)
CI01000004_01332533_01345585 SCP2 other upstream 256368 1331583 ~ 1346008 (+)
CI01000004_00467911_00469949 AGRP2 other upstream 1132696 467802 ~ 471846 (+)
CI01000004_01867166_01868986 C7H1ORF21 other downstream 247689 1867166 ~ 1868986 (+)
G25329 NA other downstream 466587 2083057 ~ 2085707 (+)
G25882 NA other downstream 931605 2548075 ~ 2573049 (+)
G25992 NA other downstream 1120066 2736536 ~ 2736768 (+)
CI01000004_02745885_02768971 NA other downstream 1141986 2745885 ~ 2769135 (+)

Expression

G25187 Expression in PRJCA010000

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G25187 Expression in each Bioproject

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G25187 Expression in each Sample
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The chart has 1 Y axis displaying Expression. Range: 0 to 2000.
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Co-expression Network