lrrc8c (LOC107749978,LOC107593158,LOC107698887,LOC107564627,LOC107675427,LOC107730691)


Basic Information

Item Value
gene id lrrc8c
gene name LOC107749978,LOC107593158,LOC107698887,LOC107564627,LOC107675427,LOC107730691
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056704.1
NCBI id CM032073.1
chromosome length 27473687
location 11428874 ~ 11437103 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043240951.1
GCGGAGCTGACTGAGAGCCGCAGACGCAAGGACATGCTCCAGTCCCCGCTAGAATCTTCATCCGAAGACGGAGAACGCGCCTTCGGTCCATCTCTAGGAGGATGATTCCAGTGACTGAATTCCGACAGTTCACGGAACAACAGCCAGCCTTCCGGGTTCTGAAGCCATGGTGGGACGTGTTCACAGACTACCTCTCTGTGGTCATGCTCATGATAGGTGTATTTGGATGCACTCTGCAGGTGATGCAAGACAAAATCATATGCCTTCCTCAAAGGACATTCTCGCCAAACCAGACAGAGCTGATGTGTCCACCTCCTTCCACAAATCATGAATCGATAGTGCCTGTACATGAGTTAAAAGGACTGAAGACAAACTTGGACATTCAGCAGTATAATTACATAAACCAAATGTGCTATGAAAAGGCGCTGCATTGGTATGCTAAGTACTTCCCCTACCTGGTTCTCATCCATACGGTCATTTTCATGGTGTGCAGCAATTTCTGGTTCAAGTTTCCTGGCTCCAGCTCTAAAATTGAGCACTTCATTTCCATCCTGGGCAAGTGCTTTGACTCTCCATGGACTACGAGGGCACTGtcggaagtgtctggggagaatcctgaagagaaagacaacaagaAGAACAGTGCCAGTAGGTCAAACCTTGACACTCCAATTGGCGAGGGCAACCTGGAGAAGACTCAATCTTTAAGATCCATTCCTGAAAAGATTGTTATTGACAAGCCAGCACCAAGTGTCCTTGACAAGAAGGAAGGAGAGCAAGCCAAGGCTTTGTTTGAGAAGGTCAAAAAATTCCGCCTGCATGTAGAGGAGGGTGATATATTGTATATGATGTATGTCCGTCAGACTGTTGTCAAAGTGCTCAAGTTTATCCTTATTATTGCGTACAACAGTGCACTGGTGTCAAAGGTTAAGTTTAGTGTTACCTGTACTGAGAACATGCAGGACATGACGGGTTACCGGTACTTCTGTTGCAATCACACTATGGCCCACTTGTTCTCAAAGCTCTCCTActgttatttgtgttttgttggaGTTTATGGACTTACATGCCTTTATACATCCTACTGGCTGTTCTATATCTCTCTCAAGGAATACTCTTTTGAATATGTCAGGCAAGAGACAGGAATTGATGACATCCCAGATGTAAAGAATGACTTTGCTTTCATGTTGCACATGATCGACCAGTATGATCCCCTATATTCCAAGAGATTTGCAGTGTTTCTCTCAGAGGTGAGTGAAAACAAGCTGAAACAGCTCAACCTCAACCACGAGTGGACAGCCGACAAGCTTCGGCAGAAGCTGCAGACTAACAGCAATAACAGGCTGGAACTTCAGCTCTTCATGCTGTCTGGTCTCCCAGATACCATCTTTGAGGTGACAGAGCTGCAGTCTTTGAAGCTTgagattattaataatgttaccATACCAGCAGCCATTGCCCAACTAGAAGATCTCCAGGAGCTTTCTCTTTACCAGTGCTCACTTAAGATCCACAGCGCCGCCACCTCCTTCCTCAAGGAGACCTTGAAGGTGCTGCGAGTGAAGTTTGATGACGCCCGTGAACTCCCTCAGTGGATGTATGTGTTGCGGAACTTGGAAGAGCTCCATCTGATAGGCTCTTTAAGTTCTGATGCATCAAAGAATGTAACCCTGGACTCTCTACGAGAGCTCAAAGCATTGAAGACACTGACGCTAAAGAGCAACTTCACCAAGATCCCTCAGTCCATTGTGGATGTGGCCAGCCATCTACAGCGCCTCTGTATTTGCAACGATGGCACAAAACTGGTCATGCTGAACAACCTGAAAAAGATGGTGAACCTAGTAGAACTTGAGTTGGTGCACTGTGACCTAGAACGCATACCCCATGCCATTTTCAGCCTGACAAATTTGCAGACGTTGGATCTGAAAGAGAACAATCTACGCACCATTGAAGAGATTGTCAGCTTCCAGCACCTCCGTAAGCTGACCTGTCTTAAGCTTTGGCACAACGGCATCGCTTTTATACCCGAACACATCAAAAAGCTTGGCAGCTTGGAGCGCCTCTACTTCAGCCATAACAAGATAGAGATCCTACCTTCACACTTGTTCCTGTGCAACAAACTGCGCTACCTTGATCTCTCCAACAACGACATCCGTTTTATCCCACCGGAGATAGGCGTTCTCCAAAGCCTTCAGTACTTCTCTGTTAGTTGTAACAAAATCGAAAATATTCCTGATGAGCTCTTCTTCTGTAAGAAGCTGAAAACTCTGAAGTTGGGCAGAAACATGCTGTCTGTCCTCTCACCAAAGATTTCTTTTCTGGGATCACTGACTCATTTGGAGTTAAAGGGTAATCACTTTGAGTTCTTACCAGCTGAACTCGGCTCTTGTCGCGCCTTAAAAAGCAGTGGACTTATCGTAGAAGACACGCTGTTTGAGACGCTGCCTTCAGACATCAGGGAACAAATGCAAGCAGAGTGATGACTGCTTTGCTTCAATGCCAAATATTGTAATCTGACTCCTTAAGAGGCAAGGCTCCAGGTGTTCCGTCCtgtaatatatattgtgatCTATATGGGTGAGTACTTgctatttcatgttttaagcTGGACTTGTGCTTAATGGCCTTTTAATGCAAAAAGAGAGACAAATCTAGGGATGAGTACCTTTTAATGCCTTAcattgtatattattaaaataaatgtacaatgtttttttttttttacctgtaaaTCATGAAAGTAGACAACCTGTGACAGGGAATCATTTACAGTATGTGTGACAGCAATTTAACTGTATGCTTTCACTGACATTTGCTCTCATAATCCATTAAGCTTTTGCAGGTCAAAAACTGTCCAATGTTTTGCACTGGAAACAGCGTTATTAGAATTTGCACTGGAAACTTTAACattccttttattttactttttatctgTATATAGGACTTTGCAAGGATTTGAAGTATAAATGATAGGAAAATAGTTCATGTAATCATTTATACtagtagtattttttatttttttcttcctgcaTATTTActctaatcattttaaatgctttcgGAGAGCAGGATCCATATGCATGTGTTCTCAGGTAGACgttatgtttttctttgcattactgttttaatgttaaacaagTTTGACAGCTGTTGGTAGTAGATCCCGCAGATAAAGGTAACCGCATCGGCTTCAAATGTTGGCGGTTTCTAAAGGGGTCTGCTTTTTTCTGCTGTGGTTTGCTTGGTTTAAACAGTACTTGACTTCTCCAGTCTAAGACAGAATGCAGATGCAGAAGGCATTTCTCTTACCTTAACTTACATTAACACTTTTCTTATAAACCAACAATGTTCTATAAATAGACATTTAGATTTATTGATCGTATTAGTCAACAGTATTTGTCATTTAATCTTTCTATTTTATGcaaattgaaagaaaacatttgacaGAAAAAGCTCTAAGCATATATACAGATGCATTTTAAGAAAAGGATTCTTTTATAATGtc

Function

NR:

description
PREDICTED: leucine-rich repeat-containing protein 8C

GO: NA

KEGG:

id description
K22038 LRRC8; volume-regulated anion channel

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043240951.1 True 3505 mRNA 0.42 3 11428874 11437103

Neighbor

gene id symbol gene type direction distance location
lrrc8db LOC107749977,LOC107730703,LOC107698886,LOC107564626,LOC107675437,LOC107555394 coding downstream 4081 11415268 ~ 11424793 (-)
znf326 znf326,LOC107749979,LOC107698885,LOC107564631,LOC107555393 coding downstream 14256 11410062 ~ 11414618 (-)
ephx4 ephx4,LOC107555389,LOC107564433,LOC107678348,LOC107730701,LOC107749983,LOC107675432 coding downstream 374027 11042046 ~ 11054847 (-)
btbd8 si:ch73-389b16.2,LOC107749984,LOC107678356,LOC107675433,LOC107730686,LOC107555388,LOC107564439 coding downstream 387845 11016892 ~ 11041029 (-)
si:ch73-389b16.1 si:ch73-389b16.1 coding downstream 415530 11010998 ~ 11013344 (-)
pkn2b zgc:153916,LOC107749976,LOC107662805,LOC107564625,LOC107698884,LOC108413223 coding upstream 12734 11449837 ~ 11481193 (-)
lmo4b lmo4,lmo4b,LOC107593176 coding upstream 258545 11695648 ~ 11708480 (-)
hs2st1b hs2st1b,LOC107694133,LOC107679861,LOC107557741,LOC106560611,LOC108427652 coding upstream 297713 11734816 ~ 11786162 (-)
sox14 sox14,LOC107679857,LOC107756185,LOC107713406,LOC107694108,LOC103365676 coding upstream 413155 11850258 ~ 11851231 (-)
trnag-ucc_1 NA coding upstream 535377 11972480 ~ 11972551 (-)
G44501 NA non-coding downstream 111 11428125 ~ 11428763 (-)
G44460 NA non-coding downstream 186368 11242277 ~ 11242506 (-)
G44459 NA non-coding downstream 186842 11241637 ~ 11242032 (-)
G44457 NA non-coding downstream 189410 11239119 ~ 11239464 (-)
G44452 NA non-coding downstream 190676 11237962 ~ 11238198 (-)
G44705 NA non-coding upstream 712731 12149834 ~ 12437749 (-)
G44730 LOC107552274,LOC107593170,LOC107694117,LOC107696767,LOC107753639 non-coding upstream 1086853 12523956 ~ 12525300 (-)
G44737 NA non-coding upstream 1158743 12595846 ~ 12965513 (-)
LOC122347051 tmem131,LOC107659030,LOC107692350,LOC107732007,LOC107548642 non-coding upstream 1291028 12728131 ~ 12730973 (-)
G44773 NA non-coding upstream 1453613 12890716 ~ 12891336 (-)
brdt brdt,LOC107678354,LOC107749988,LOC107675431,LOC107730697,LOC107564432 other downstream 359408 11055035 ~ 11069466 (-)
gng12b LOC107555383,LOC107678346,LOC107705318,LOC107564436,LOC105895117,LOC108271932 other downstream 443742 10948692 ~ 10985132 (-)
ntn1a ntn1a,LOC107555375,LOC107704007,LOC107733905,LOC107569361,LOC107757426,LOC107660463,LOC105903456,LOC106587088,LOC105012279 other downstream 593349 10578989 ~ 10835525 (-)
G44358 zgc:158654,LOC107733898,LOC107555378,LOC107704002,LOC107757422,LOC107660467 other downstream 712133 10710045 ~ 10716741 (-)
usp43a usp43a,LOC107733909,LOC107704008,LOC107555366,LOC107659855,LOC107728176,LOC107561022 other downstream 919871 10434204 ~ 10509003 (-)
LOC122347614 rab6ba,rab6b,LOC107696768,LOC107552273,LOC102207753,LOC100696791,LOC107694122,LOC103354239 other upstream 1088653 12525756 ~ 12897718 (-)
tmem131 tmem131,LOC107659030,LOC107692350,LOC107732007 other upstream 2218157 13655260 ~ 13681294 (-)
pex5la pex5la,LOC107709207,LOC107590632,LOC107659033,LOC107692357,LOC107548659,LOC107732026 other upstream 2281099 13718202 ~ 13785903 (-)
G45257 ttc22,LOC107590622,LOC107692368,LOC107659045,LOC107591163 other upstream 2723372 14160475 ~ 14193166 (-)
LOC122347580 ttc4,LOC107738930,LOC107659046,LOC107709194,LOC107692369 other upstream 3890480 15327583 ~ 15330851 (-)

Expression


Co-expression Network