tefm (tefm,LOC107591914)


Basic Information

Item Value
gene id tefm
gene name tefm,LOC107591914
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056704.1
NCBI id CM032073.1
chromosome length 27473687
location 10123815 ~ 10126741 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043240990.1
CACGCCGTGTTTCCACACGAGCCTTTGCGCGTCGGACCTCCGAGGGCAACGCGTAGGGCACTGTCATATgtaagaaaaacacagagctgtGGCGATCAAACATGTGGATCGCAAAACGCCTGCTGTCTTCCGTCTTCCTCAaagGGCACTATAGTCTGTTCTGTCGCCGCCCGAGCTCTTTCCCTAAATATGAGCTCCGATTTTTGCACTGCACCTGTTGCAGAAGGAGCAGAATCATGATCTGTGGGCTTGACAACTTGAATACATCGGTTTCCTCTGAATTATGCCAAGAAAAGCACAAACCCCTGGACTGGTGTTATACCACAGAGCAGCGTGCTGTCATCCTTCAGCACCTCAATACAGCCACAGAGTCAGAACTGGAACAGGTCAAACTGCTACGAGGACGGAAAGCTACTAACATCGTTAAATACAGAACCGCTTACGGACCGTTTAACAGCCTGGAGAGTGTCATGAACGTGCCCTTACTGAAACAGAAGAGTGCTGTCACAGTCTTTAACTCTATCCTTAACCCAGCTGAcaagaaagagaggagaaaaggAAAAGTCCAGCTGGCTAAATTTATAAGGCCGGAGGTCGACCGAGCTCTGCTGGAGaATGCAAGCTCTATAGTGTCCATTGTTTGTGGTACTAATAAAATTGCATGGACACACATGGATCACGCAAGAACCGTCTTAGACTGGCAGCAAGCAGAGTGCAAGAGTTTTATGAAAGGAACATACATGGCGTCCGATTATTTGGAAGATCTCTCCGCTGTTATTTCAAGCTTCCCTCCTGCTGACTTTTTTTTGGTGGAGAAGCCAAACATCTCTCCCCAGAATACTTCTCTTTACCCAGTCTTAGTCCATCTCCGAACAGTAGAGGCCATGTTATTTGCTTTACTAACTGCAGCGAGGGACCCGGAAAGCCCCCCGAAAGTCCTTAACATGATGCGCACGGCTGTCGGCCGCCATTTCAACCTAATAGTGGGGGATTGTCGTACAAGTGGAGCCGAGACGGTGAGGAAGATGATGACGGAGTCCGTGATGAAGCAAGATCCACGCGTTCTTTTTCCTCATGACTTGGTGTTAAAGCACAGAAACTCCTTTAAGATGAGCAGCAGGAACAAAGGAGAAGAGCTGTGCGACGCTCTCCTGCAAGCCGTTGCGTTTTTTGAACTCCTGCATGAGTGAATTTTCTACTGAATGGCTATTTCTGATTTGTTGGACATCTTTACACAGTTCTTTCTCTGAAACAAAggctatatattaaaaacaatttacattGTTTGAACATGACACatgagtttatttaattttcatcttAAACTAGGACTGTCTAGGACTGTCTCCTACTGTCGAGgagaaactttaaaaatgtagaaaggGTAAAAGTTACGGTAACACTCAATTATAAACATTGTTATAGCATTGTTAAAGAGGGAAtcaaccccaaaatgaaaactcaaatTGTACATGTATGAGCTTCATTCTTTGTTCTGTTACACAAAAGAATAGCAAATAGTTGCTGGTAGCCATTTGGTATGGGGAAAAATGATTGGAAACCAGTAGCTTTCAGTAACGGGTTGGTTTCCAGTGATCTTTAGTATATTTATGTGCAGCTGAAGAAAGATATTCATgaaggtttggaatgacttaACGTCTTTTGTGGGGAACTATCCCTGCCAGTGTTGATTCTTGCTGCACTTCTCTTTCAATTAACTAGAGTCTTGGACCTGGATATCCCCAACCCTCGATTCCATGCTGCATCACCTGAACTGGTTGTGTCAGATAAAAGAGACATCCAAAAAGTGTACAGTCAGGGTTACTCCAGGACAAAATGATCAGAACTTATAGAGGTAAATGTGTGTtaattacagtgaaaaaaataaaatactgtgatTATCTTTT

Function

symbol description
tefm Predicted to enable DNA polymerase processivity factor activity. Predicted to be involved in mitochondrial transcription and oxidative phosphorylation. Predicted to act upstream of or within transcription elongation from mitochondrial promoter. Predicted to be located in mitochondrial matrix. Predicted to be part of ribonucleoprotein complex. Predicted to be active in mitochondrial nucleoid. Orthologous to human TEFM (transcription elongation factor, mitochondrial).

NR:

description
transcription elongation factor, mitochondrial-like

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0006390 mitochondrial transcription biological_process
GO:0006119 oxidative phosphorylation biological_process
GO:0050790 regulation of catalytic activity biological_process
GO:0006259 DNA metabolic process biological_process
GO:0042645 mitochondrial nucleoid cellular_component
GO:0030337 DNA polymerase processivity factor activity molecular_function

KEGG:

id description
K17658 TEFM; transcription elongation factor, mitochondrial

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043240990.1 True 1907 mRNA 0.44 4 10123815 10126741

Neighbor

gene id symbol gene type direction distance location
utp6 utp6,LOC107710019 coding downstream 17007 10101483 ~ 10106808 (-)
trim25 trim25,LOC107710025,LOC107553309,LOC107669536 coding downstream 74947 10039427 ~ 10048868 (-)
LOC122346913 nptx1,LOC107750979,LOC107553322,LOC107667295,LOC107701212 coding downstream 341832 9778250 ~ 9781983 (-)
LOC122346819 rptor,LOC107553319 coding downstream 413217 9586425 ~ 9710598 (-)
si:dkey-237i9.1 LOC107567927,LOC107667603,LOC107591922,LOC107667296,LOC107731096,LOC108272757,LOC108424802 coding downstream 771147 9308586 ~ 9352668 (-)
znf207b znf207b,LOC107669543,LOC107710013,LOC107553300 coding upstream 19483 10146224 ~ 10152064 (-)
rhbdl3 rhbdl3,LOC107718708,LOC107701837,LOC107698683,LOC107591910,LOC107754871 coding upstream 40495 10167236 ~ 10202756 (-)
sept9b sept9b,LOC107754867,LOC107566422,LOC107561033,LOC107718712,LOC107674495 coding upstream 169263 10296004 ~ 10335041 (-)
zgc:174863 NA coding upstream 250590 10377331 ~ 10384083 (-)
jpt1a LOC107728178,LOC107659861,LOC107733897,LOC107561029,LOC107573532 coding upstream 263306 10390047 ~ 10394216 (-)
G44105 NA non-coding downstream 25636 10097980 ~ 10098179 (-)
G44095 NA non-coding downstream 39540 10083990 ~ 10084275 (-)
G44065 cbx4,LOC107710010,LOC107669529,LOC107553295 non-coding downstream 105747 10013936 ~ 10018068 (-)
G44040 NA non-coding downstream 180597 9942615 ~ 9943218 (-)
G44037 ppp1r27,LOC107710012,LOC107591937,LOC107553297 non-coding downstream 181809 9941570 ~ 9942006 (-)
G44167 NA non-coding upstream 111678 10238419 ~ 10238618 (-)
G44168 NA non-coding upstream 115469 10242210 ~ 10242509 (-)
G44208 NA non-coding upstream 245899 10372640 ~ 10372852 (-)
G44209 NA non-coding upstream 246429 10373170 ~ 10373568 (-)
G44210 NA non-coding upstream 249399 10376140 ~ 10376578 (-)
c6h17orf67 cunh17orf67,LOC107591943,LOC107669532,LOC107701203,LOC103044666 other downstream 96135 10025453 ~ 10027680 (-)
anapc11 anapc11,LOC107553313 other downstream 174827 9945667 ~ 9948988 (-)
G43900 NA other downstream 851510 9271418 ~ 9272305 (-)
G43899 NA other downstream 852893 9269188 ~ 9270922 (-)
G43896 NA other downstream 856491 9266002 ~ 9267324 (-)
cd7al LOC107710016,LOC107553302,LOC107669545,LOC107698686,LOC107710292,LOC107591915,LOC107553301,LOC107710015 other upstream 12164 10138905 ~ 10145168 (-)
tnrc6c2 LOC107701838,LOC107566423,LOC107754870,LOC107591908,LOC107718711,LOC107698681 other upstream 77876 10204617 ~ 10243425 (-)
LOC122347367 NA other upstream 229136 10355877 ~ 10358850 (-)
usp43a usp43a,LOC107733909,LOC107704008,LOC107555366,LOC107659855,LOC107728176,LOC107561022 other upstream 307463 10434204 ~ 10509003 (-)
ntn1a ntn1a,LOC107555375,LOC107704007,LOC107733905,LOC107569361,LOC107757426,LOC107660463,LOC105903456,LOC106587088,LOC105012279 other upstream 452248 10578989 ~ 10835525 (-)

Expression


Co-expression Network