LOC122346397 (pomgnt1,LOC107675946,LOC107692396)


Basic Information

Item Value
gene id LOC122346397
gene name pomgnt1,LOC107675946,LOC107692396
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056704.1
NCBI id CM032073.1
chromosome length 27473687
location 15746074 ~ 15753735 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043240995.1
CTTCGTCCTGCAATCTGGCTTCACACTACTCATTACCTGCATATGGCCAAGCGCTACTAGACCCGACCTAAACTAAATTACAGTTATATTTTCTGGAGAGTCGGGACGTCGTTTCCGTGCAACATAAAATGCTGCTGAGATGAAGAAGACGTGATCCCAGGCGTTGTCGGATGCAGGCAGGTCTTGTGATCGGGAGCAGCGGGCAGGACTGCAGGAATGGACACCTGGACACCCAACCCGAGAGCCAAACCCTTCATCCCCCGCCAGCAGCGCAGCCTCTACCTCACCTGGAAATACAGACTcaccaacaaaagagcagtgCGGCGGATCTGCCAGGCCAGTGCTGTCCTCTTTCTACTGATCACAGTGATTGTCAATATCAAACTCATTCTTGACACGAGGAGAGTTGCCAGTGAGGACGATGCTGTTCAAGAGTATGATGACGTCCTGCCTAACATGGAAACCCCGCGCAGACCAGCGAGTGGGAGAAAGGTTTTGGATATCGAGGTGTATTCTAGTCGATCTAAGGTTTATGTAGCAGTGGATGGCACCACTGTTCTGGAAGATGAGATGAGGGAGCAGGGCCGAGGCGTGCATGTTATAGTTTTAAATCAGGCAACTGGTCATGTCATGGCCAAAAGAGTGTTCGATACTTATTCTCCCCATGAGGATGAAGCCATGATCCTCTTCCTCAACATGGTCACACGTGGAAGAATCCTCATCTTTACTATTAAGGATGAGGGGACTTTCCACTTGAAGGATGCAGCAAAGAATCTTCTGAAAGGTTTGGGGAGTCAGGTAGCTGTCACTTTAGGTTGGAGAGATATGTGGACTCTGGTTGTAAAGAAGGGAGGTCAGGTGTATGGGGAGAAGCACTCCAAGTCTCCTGCTCTGTCCACATGGGGTGATCCTGTGCTGCTGAAGACTGAGGTCCAGCTGACAGCTTCTGAAGAGGCAGAGTGCCATTGGGCAGACACCGAGCTGAACCGCCGGAGAAAACTCTTTTGCAGTAAAGTGGAAGGATATGGAAGCATTTGTAGTTGCAAAGACCCAGCCCCCATAGAGTTTAACCCAGACCCACTGCCTAGCAACAAAGTCTACAACGTCCCAGTAGCAGTTATAGCTGGAAATAGACCAAACTATCTCTACAGAATGCTGCGCTCTCTTCTTTCGTCCCATGGTGTCAATCCACAGATGATCACTGTTTTCATCGATGGCTACTATGAGGAACCcatggatgtggtggatctctTCGGTCTTAAAGGAGTTCAACATACCCCTATCAGTATTAAGAATGCTAGAGTGTCACAGCACTACAAAGCCAGCTTGACTGCAACCTTCAGTCTGCACccaGATGCAGATTTTGCCATTGTCTTGGAGGAAGACCTGGATATTTCCATAGATTTTTTCAGCTTTCTCAGCCAGACTATCCATTTGTTGCGTGAGGATGACAGTCTGTACTGTATCTCAGCCTGGAATGACCAAGGCTATGAGCACACCGCAGAGGACCCGTCTCTGTTGTACAGAGTGGAGAGTATGCCCGGCCTTGGCTGGGTGCTTAAAAAAAGCCTTTACAAGGATGAACTAGAGCCCAAATGGCCAACTCCTGAGAAGCTATGGGACTGGGACATGTGGATGCGGATGCCAGAACAGAGGAAGGGGAGAGAATGTGTCATTCCTGATGTCTCCCGCTCTTATCACTTTGGCATCATTGGGTTAAATATGAATGGTTACTTCCATgaagtttactttaaaaagcacaaGTTCAACACTATTCCGAATGTTCAGATGAGAAATGTAGATAGCTTGAAGAAAGATGCATATGAGATCGAAATCCAAAACCTGCTACGTGAGGCTGAGGTCCTGGACCACAGTAAAAACCCATGCGAAGACTCATTTATCCCAGACACAGAGGGAAAGACCTTTGTAATGTTCATTAAAATGGAGCAAGAGACGGATACAAACACTTGGACGGAACTGGCGAAGTGCCTGCATGTATGGGACCTGGATGTACGAGGTTATCACAAAGGACTCTGGAGGCTCTTCAGAAAGAAGAACCACGTATTAGTGGTGGCTGTTCCAATCTCACCATACTCTGTTAAGAAGCCCAATAACGTCACTCCCATTCACTTGGAGCCAGCACCTAAAGAGGAGGGACCTCCTGTGGAACAGATTTAGAGCAGTTTTAATCCCACCCAAAGGGCCTTTCCTAACCACTAACAGACAAGGCCCATGTCATGCGGATAATGGGCCTTGTGTTCTTCAGGCCGTTGCAAGACAAAGGGGATAGGATGAACCTGACTGAACCGTCCTGTGCTGGTGCCCTCTAGGAACTGCA

Function

symbol description
pomgnt1 Predicted to enable beta-1,3-galactosyl-O-glycosyl-glycoprotein beta-1,3-N-acetylglucosaminyltransferase activity. Predicted to be involved in O-glycan processing. Predicted to act upstream of or within protein glycosylation. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be integral component of Golgi membrane. Is expressed in several structures, including axis; fin bud; myotome; nervous system; and shield. Human ortholog(s) of this gene implicated in lissencephaly; muscular dystrophy (multiple); and retinitis pigmentosa. Orthologous to human POMGNT1 (protein O-linked mannose N-acetylglucosaminyltransferase 1 (beta 1,2-)).

NR:

description
PREDICTED: protein O-linked-mannose beta-1,2-N-acetylglucosaminyltransferase 1

GO:

id name namespace
GO:0006486 protein glycosylation biological_process
GO:0000139 Golgi membrane cellular_component
GO:0008375 acetylglucosaminyltransferase activity molecular_function

KEGG:

id description
K09666 POMGNT1; beta-1,2-N-acetylglucosaminyltransferase

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043240995.1 True 2338 mRNA 0.48 22 15746074 15753735

Neighbor

gene id symbol gene type direction distance location
LOC122347482 tsfm,LOC107711018,LOC107585120 coding upstream 48235 15695626 ~ 15697839 (+)
LOC122347276 sumf1,LOC107673603,LOC107585117,LOC107667304 coding upstream 55040 15683566 ~ 15691034 (+)
pfkfb4b pfkfb4b,LOC107711047,LOC107673509,LOC107748389,LOC107585116,LOC108440764,LOC103024058 coding upstream 88886 15646020 ~ 15657188 (+)
LOC122346435 wdr78,LOC107590676 coding upstream 405938 15334030 ~ 15340136 (+)
ghrhrb ghrhrb,LOC107704523,LOC107692395,LOC107556991,LOC107731650,LOC107717144 coding upstream 561408 15162993 ~ 15184666 (+)
LOC122347155 pik3r3,LOC107594617,LOC107717145,LOC107692397,LOC106584012,LOC107731623,LOC107556985 coding downstream 60187 15813922 ~ 15941551 (+)
LOC122347284 mast4,LOC107740425,LOC107684348,LOC108437187,LOC107730326,LOC107681051 coding downstream 320725 16074460 ~ 16104862 (+)
LOC122347577 tmem69,LOC107731626,LOC107684288,LOC107594642,LOC107725194,LOC107692399,LOC107579605 coding downstream 328601 16082336 ~ 16083207 (+)
LOC122347576 mast2,LOC107731624 coding downstream 330574 16084309 ~ 16090289 (+)
pik3r3b pik3r3b,pik3r3,LOC107675943,LOC107717145,LOC107692397,LOC107594617 coding downstream 351326 16105061 ~ 16114730 (+)
G45459 LOC107711016,LOC107673510,LOC107748416 non-coding upstream 100948 15644034 ~ 15645126 (+)
G45470 uroc1 non-coding upstream 107550 15637946 ~ 15638524 (+)
G45456 NA non-coding upstream 162668 15580262 ~ 15583406 (+)
G45447 NA non-coding upstream 169039 15510740 ~ 15577035 (+)
G45421 NA non-coding upstream 258182 15486374 ~ 15487892 (+)
LOC122346530 NA non-coding downstream 50553 15804288 ~ 15805565 (+)
G45635 NA non-coding downstream 135022 15888757 ~ 16117279 (+)
G45643 NA non-coding downstream 398447 16152182 ~ 16155761 (+)
G45684 NA non-coding downstream 541796 16295531 ~ 16298954 (+)
G45794 mier1,LOC107551013,LOC107758364,LOC107724131 non-coding downstream 810219 16563954 ~ 16565233 (+)
G45448 LOC107585177,LOC107673508,LOC107711046,LOC107748403,LOC107582692 other upstream 179406 15564981 ~ 15566668 (+)
G45419 sgip1,sgip1a,LOC107739126 other upstream 286688 15358861 ~ 15459386 (+)
pomgnt1 pomgnt1,LOC107675946,LOC107692396 other upstream 501794 15236165 ~ 15244280 (+)
meltf mfi2,LOC107692364,LOC107709202,LOC107659038,LOC107591189,LOC107739178,LOC107590629 other upstream 1765788 13972173 ~ 13980286 (+)
G44887 NA other upstream 2336162 13394229 ~ 13409912 (+)
G45894 NA other downstream 1432973 17186708 ~ 17187308 (+)
G46022 NA other downstream 2241456 17995191 ~ 17996717 (+)
tubgcp5 tubgcp5,LOC107585157,LOC107673606,LOC107582726,LOC107753407,LOC107685296 other downstream 2402920 18156655 ~ 18166242 (+)
atp10a atp10a,LOC107673579,LOC107711085,LOC107733604,LOC107685287,LOC107585184 other downstream 2823443 18577178 ~ 18616958 (+)
si:dkey-195m11.8 si:dkey-195m11.8,LOC107585129,LOC107673511,LOC107711061,LOC107667357,LOC107733585,LOC107582701,LOC107711063,LOC107673480,LOC107733603,LOC107582828,LOC107667335,LOC107579851 other downstream 3508849 19262584 ~ 19347629 (+)

Expression


Co-expression Network