G25672


Basic Information

Item Value
gene id G25672
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000004
NCBI id null
chromosome length 17451736
location 1689359 ~ 1690837 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU28972
TTTCACTCTAAGTAATGAGTGTTTCAACAGTTTCCTTTTAACACTGATTCCAGTAAATCCACTGAATCCATAACCAGTAACCACCCACACTTGTTTAATTCATTTGTTAGAATAATAATAGTTAGCTGGGCCAAATGCCTTTCACCAAGACAACAAACTGGATATAAACTAGGATATTACAATTAATATACATTATTTTAATGTTTCTTATGCAATTATTTGGGTAATAATCAGGCAGTCAATCAAGTTCTCATTACATTCTTTCCTATTGACAGTATAAATGTTTTGCGACAATATATGTAGATCCCACGTCAACAACTCATTAATGACGTTCCCAGTATTAACCTTATCGACATGACTAGACTGTTCAAGAACAACCACATACTCTATTTATGTATCAGCACTAAAAAATCCAGGATTCAAAACTGCATTTGAGAGCTGTGACTGACTAATTCTGGTACACTAAGGAAATAAGATGACTAACATGTTCAGACTGTCTAAGACTGATAATCAAATCCTAGTGATAGACCAAAAGGTACTTCAGTAGTGTTTGCAGAATACCACAAGAGGGTATCAAATCCTCCTTGTTGCATCGAATCTATATTCCAACAAAACTTTGACTTATTAGGCTTTGAAATAACAGACAAATGTGGAAGGCATCAAAAAGTACCATAAAGAAAGTTTGCAGTAAATTCAAATTTGCATCGGCTCAAACGTGCAAACATGCAGAGAGCAGCATTCAAGTTAGTTTTAATAAGCAATGCTCAGGTGAAGAGGAAATAGATGAGCTGCCATCTCACCTTGTTGGAGGCCATGTCACTAACAGAGCGGTAAGTCTGGATGGTCTCCAGCTGGTCCAGGCACCAGTCTAGCTCCTCCATGGTCTCCACAGCCAACTTCTGGTAGGATTCATCTGGTAAGAGACACACGGATATGTATTCAGGATCCAGCCTCTGCTGCATGGCCAGAAAAGGTGGTCCAGCAGGAGCAGTGCAGATAGGGCAGCAGTGATCTTTCATGGTGGGCTGAGTGCTGCTGATGTAGTCATTCTGCACTGATAGCAGCTGGATTAATAGCTCACTGCATAGTCCTTCCCATTGTGTCACAGCCTCAGTCTCCAAACTCACCTACTGTGCAGTCTGTCTGCTAGTCAGTCTCTTTCTCCTCACATCGCCTTGTGCTGATGTGTCAATGAGCCTCAGACCCAGGGGAACTTAGTGGGAGGGACTCTAAAACTCATTCCCAATTTCTCTCCTCTTCTGTTTACTGAAAAATGCATTTAATTGAAACCAAAGTGAGGAGAGAATAATGAAAATGATTAATGCTCAATTATCTTGTTAGTAAATTATTTTGATGGATAAATTAAAAAACATGTTAGGGACACATTTCAACCATTACTCAACATTTAGCGTAAATGAAATAAAGTCTATTTTTGAGACCATAATGCATTTTTTTTTTCATTTATATTAATGTAGATTA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU28972 True 1479 lncRNA 0.42 1 1689359 1690837

Neighbor

gene id symbol gene type direction distance location
CI01000004_01626984_01627238 NA coding downstream 62121 1626216 ~ 1627238 (-)
CI01000004_01605140_01622364 NA coding downstream 66995 1604552 ~ 1622364 (-)
CI01000004_01554696_01564701 NA coding downstream 124658 1554656 ~ 1564701 (-)
CI01000004_01440447_01443088 NA coding downstream 246067 1439771 ~ 1443292 (-)
CI01000004_01404265_01425424 NA coding downstream 263935 1404265 ~ 1425424 (-)
CI01000004_01758554_01762415 NA coding upstream 67585 1758422 ~ 1762415 (-)
CI01000004_01773383_01774888 INSL5B coding upstream 82091 1772928 ~ 1774942 (-)
CI01000004_01814534_01821755 CMPK1, CMPK coding upstream 122945 1813782 ~ 1821755 (-)
CI01000004_01833090_01839923 SLC35A3B, SLC35A3 coding upstream 142177 1833014 ~ 1839923 (-)
CI01000004_01853673_01854481 NA coding upstream 162351 1853188 ~ 1855232 (-)
G25687 NA non-coding downstream 3151 1685172 ~ 1686208 (-)
G25689 NA non-coding downstream 4720 1683373 ~ 1684639 (-)
G25688 NA non-coding downstream 6829 1681971 ~ 1682530 (-)
G25559 NA non-coding downstream 19377 1629346 ~ 1669982 (-)
G25625 NA non-coding downstream 25306 1649988 ~ 1664053 (-)
G25690 NA non-coding upstream 457 1691294 ~ 1692061 (-)
G25700 NA non-coding upstream 37695 1728532 ~ 1730623 (-)
G25712 NA non-coding upstream 62402 1753239 ~ 1753460 (-)
G25661 NA non-coding upstream 64701 1755538 ~ 1757321 (-)
G25666 NA non-coding upstream 214476 1905313 ~ 1907541 (-)
G26788 NA other upstream 1583596 3267683 ~ 3275721 (-)
G27746 NA other upstream 3487390 5178227 ~ 5203724 (-)
CI01000004_05617072_05627369 NA other upstream 3929546 5616644 ~ 5628289 (-)
CI01000004_06539836_06541252 NA other upstream 4843990 6538904 ~ 6541252 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
rainbow trout (Oncorhynchus mykiss) G449929 NA non-coding NC_048569.1 CM023223.2 85711280 ~ 85712220 (+)