LOC122346414 (uroc1)


Basic Information

Item Value
gene id LOC122346414
gene name uroc1
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056704.1
NCBI id CM032073.1
chromosome length 27473687
location 15594363 ~ 15600846 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043241018.1
CAGAGTGTCAGCAGGGCAGTGTTTATATAAACCTCTGTAATTCTTCCTGTGAAGTACAAACCAATCCAGAGAGAACTTGAGTGATGTCGACCCTAAAAGAGATCTGTGCCGGATTACCACTTGATCCTCTTCCTCCAAACCGTGGCAGAGACCCCAGCATACCGCATGCACCTGTCCGTACTCCAAACCTCACCCCAGCGGAAGAACGGCTGGCTTTGAGGAATGCTTTGAGATACTTTCCTCCTAACCTGCATGCTAGTCTGGCTACAGAGTTTGTGCAGGAGCTCAGACAGTATGGACACATTTACATGTACCGCTTCTGTCCTACGCTACATATGAGAGCCTATCCTATCGATCAGTACCCATGCAGAACAAGACAAGCTGCTTCCATCATGCTTATGATAATGAACAACCTGGATCCTGCTGTAGCACAGTTCCCACAAGAGCTGGTCACATATGGAGGAAACGGACAGGTGTTCATCAACTGGGCACAGtTCTGGTTGGTATTTCACTATCTGAGCACCATGACTGAAGAGCAGACCCTTGTGATGTACAGTGGGCACCCATTGGGACTTTTTCCCAGCCTTCCTTCTTCACCTCGCTGTGTTATCACAAACGGCATGGTCATTCCAAACTATTCTTCCAGAGAGGAATATGAGAAGATGTTTGCTATGGGCATTACAATGTATGGGCAGATGACTGCTGGAAGTTACTGCTACATCGGCCCGCAGGGAATTGTCCACGGCACCATGTTGACAGTGCTCAATGCAGGTCGGAGATACTTGGGTTCAGGTGACCTGAGAGGTCGTGTGTTTGTGACATCCGGTCTGGGAGGCATGAGCGGAGCACAAGCAAAGGCAGCGGTCATTGCTGGCTGTGTTGGGGTCATTGCAGAGGTTGATGAAACTCCACTGAAGAAAAGGCATGAGCAGGGCTGGTTGATGGAGATCACTAGTGACCTGAGCCACTGCATCCAACGCATCAGGGAGGCTAGAAAGGCCAAGATGGCCTTGAGTTTGGGATACCATGGCAACATTGTGGATCTCTGGTAATGCCTGTACCAGGACTATAAGAAGACAGGAGAGTTGTTGGTTGATTTGGGTTCTGATCAGACATCACTTCATAATCCATTCAGTGGAGGATATTATCCAGTGCAACTTGCCTTCAGACAAGCCAATCAGCTCATGAACACTGACCCTGAGCGCTTCAAAACCCTGGTACATGAAAGTCTTCGCAGGCAGGTGGCTGCCATCAATAAATTGTCTGATGCAGGGATGTTCTTCTGGGACTACGGCAATGCTTTTCTGTTAGAAGCCCAGAGAGCAGGTGCGGAGGTAGAGAAGAAAGGAGGAGGAGCTACTGAGTTTAAATATCCTTCATATGTCCAACACATAATGGGAGATATTTTTTCACTGGGTTTTGGGCCATTTCGTTGGGTCTGTACATCTGGTGACCCTGCTGACCTGGCTGAGACCGACTCAATCGCCACTGCTGTACTAGAACAGACAAGTTCCACAGTAACCGAACGTGTCCGACAGCAGTACAGTGACAACATCCGCTGGATCCGTGAAGCAGGAAAACACAAGATGGTTGTTGGTTCGCAGGCCCGTATTCTCTATTCGGACCAGCGAGGAAGAGTATCCATCGCCTTGGCTATAAACCAAGCCATTGCTAAGGGCAGAGTCTCGGCTCCGGTAGTTATCAGTAGAGACCACCATGATGTCAGCGGGACAGACAGCCCCTTCAGGGAAACCTCCAATGTTTATGATGGCTCGGCCTTCTGTGCAGACATGGCAGTGCAGAACTTTGTTGGTGATGCATTCCGTGGTGCCACATGGGTTGCTTTGCACAATGGAGGAGGAGTTGGATGggggGAAGTGATAAATGGTGGTTTTGGATTGGTTCTGGATGGTTCTGAAGAAGCAGGGCAAAAAGCTAAACTAATGCTGAACTGGGATGTCTCTAATGGGGTGGCACGGAGATGCTGGTCTGGCAATGCTAATGCTTATGAGACAATTCAACGTACCATGGAGAACCAGCACCAGCTGAGAGTCACAATGCCCAACCCAGTACAGGACGATCAAATCCTGGACCGTGCACTGCAGTAAAAGactgaacgtttttttttgttttgtttttttaaatatgacattattcattaaaaagcaaCAGAATTAGTGTTtattaacacaatttttttcataccagaaaaaaattgtaaatgtaaagtaataaaaat

Function

symbol description
uroc1 Predicted to enable urocanate hydratase activity. Predicted to be involved in histidine catabolic process. Predicted to act upstream of or within histidine metabolic process. Human ortholog(s) of this gene implicated in urocanase deficiency. Orthologous to human UROC1 (urocanate hydratase 1).

NR:

description
PREDICTED: urocanate hydratase isoform X1

GO:

id name namespace
GO:0008152 metabolic process biological_process
GO:0016153 urocanate hydratase activity molecular_function

KEGG:

id description
K01712 hutU, UROC1; urocanate hydratase

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043241018.1 True 2239 mRNA 0.48 21 15594363 15600846

Neighbor

gene id symbol gene type direction distance location
sgip1a sgip1,LOC107659047 coding downstream 200240 15344929 ~ 15394123 (-)
LOC122346434 pars2,LOC107659014,LOC107590619,LOC107591164,LOC107709182,LOC107738922,LOC107692369 coding downstream 260430 15331236 ~ 15333933 (-)
LOC122346855 LOC107556984,LOC107731622,LOC107692431,LOC107675940,LOC107594634 coding downstream 338203 15246429 ~ 15256160 (-)
adcyap1r1b adcyap1r1b,LOC107731652,LOC107717143,LOC107692394,LOC107594619 coding downstream 382382 15187162 ~ 15211981 (-)
LOC122346528 LOC107731631,LOC107704508 coding downstream 446278 15144790 ~ 15148085 (-)
LOC122346598 LOC107673517,LOC107711045,LOC107580698 coding upstream 586 15601432 ~ 15603448 (-)
LOC122347277 endou coding upstream 90416 15691262 ~ 15695534 (-)
mast2 mast2,LOC107717134,LOC107692432 coding upstream 551300 16152146 ~ 16253840 (-)
tmem69 tmem69,LOC107731626,LOC107684288,LOC107725194,LOC107594642,LOC107692399,LOC107579605 coding upstream 653795 16254641 ~ 16256080 (-)
LOC122347419 nasp,LOC107551040,LOC107725201,LOC107594614,LOC107731628 coding upstream 671171 16272017 ~ 16277301 (-)
LOC122347411 efcab12 non-coding downstream 2167 15591067 ~ 15592196 (-)
LOC122347378 NA non-coding downstream 6141 15587506 ~ 15588222 (-)
LOC122347074 NA non-coding downstream 13308 15580584 ~ 15581055 (-)
G45554 NA non-coding downstream 105262 15486663 ~ 15489101 (-)
G45579 NA non-coding downstream 109396 15482906 ~ 15484967 (-)
G45602 NA non-coding upstream 43223 15644069 ~ 15645396 (-)
LOC122347156 NA non-coding upstream 242285 15843131 ~ 15877467 (-)
G45709 NA non-coding upstream 301370 15902216 ~ 16118586 (-)
G45751 NA non-coding upstream 666337 16267183 ~ 16267542 (-)
G45752 NA non-coding upstream 668069 16268915 ~ 16269392 (-)
insl5a LOC107692440 other downstream 103678 15489118 ~ 15490685 (-)
LOC122347580 ttc4,LOC107738930,LOC107659046,LOC107709194,LOC107692369 other downstream 263512 15327583 ~ 15330851 (-)
G45257 ttc22,LOC107590622,LOC107692368,LOC107659045,LOC107591163 other downstream 1401197 14160475 ~ 14193166 (-)
pex5la pex5la,LOC107709207,LOC107590632,LOC107659033,LOC107692357,LOC107548659,LOC107732026 other downstream 1808460 13718202 ~ 13785903 (-)
tmem131 tmem131,LOC107659030,LOC107692350,LOC107732007 other downstream 1913069 13655260 ~ 13681294 (-)
G45606 sec61a1,LOC103358725,LOC108436273,LOC108440718,LOC103023094,LOC106518493,LOC102228108 other upstream 3064 15603910 ~ 15605470 (-)
LOC122347279 LOC107556984,LOC107731622,LOC107692431,LOC107675940,LOC107594634,LOC107717133 other upstream 155463 15756309 ~ 15765107 (-)
G45730 pik3r3,LOC107692397,LOC107717145,LOC107675943 other upstream 458122 16058968 ~ 16059767 (-)
G45731 LOC107692397,LOC107556985,LOC107717145,LOC106584012 other upstream 459047 16059893 ~ 16060466 (-)
fam183a fam183a,LOC107551015 other upstream 760321 16361167 ~ 16364020 (-)

Expression


Co-expression Network