LOC122346426 (klhl30,LOC107753621,LOC107694118,LOC107696751,LOC107752665,LOC107593185)


Basic Information

Item Value
gene id LOC122346426
gene name klhl30,LOC107753621,LOC107694118,LOC107696751,LOC107752665,LOC107593185
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056704.1
NCBI id CM032073.1
chromosome length 27473687
location 12464542 ~ 12469417 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043241038.1
CCTAAAAATAGCAGTGTGAAAGACAAGCATGCTGTCCCAGTGACTCTGCAAAAGACGGCGTGTCCCCCATCTCAGACAGCAGCAACAAAAAAGTCTACGTTCTAAACAAgaacttttaaataatgtatgattTCTGCTTTCATTCACAAACAGGTAAACACTGAAAACATCTGTTGGCTGGCCCTGAATGCATTAAGGCCATAGGTCAAAGTGTCGTCATGGTGCGTAATATAGACGATCTAGACTTCTGTCTCTCTTCCCATCCCCAGAGTATCATGGAGGGCCTGCGCTCCCTCTGTTCTCAACCCAAACTTGTGGATGTCACCTTGAGCGCAGGTGGACAAGATTTCCCCTGTCACCGGGGAATCCTTGCTCTCTGCAGCCACTACTTCCGTTCCATGTTCTCAGGAGATTTTGTAGAGAGTATTGCTGCTCGTGTTGAGCTTCATGATGTAGATCCCAATGTGTTGTCATCCTTGCTGGACTTTGCATACACAGGGAAACTCACcatcaataaaaacaatgtagaGGGACTCATCTGCACATCCAGCCAGCTCCAGTTCCACACCGTTCGTACTGTATGCAGTCGATATCTGCAGCACCAGATAGATGCCACAAACTGCTTGGGAATCCTTGAGTTTGGAGAGATCCATGGCTGCCCTGAAGTTGTCGCCAAAGCATGGAGCTTCCTCCTTGAAAATTTTGAGGCAGTGCAGCAACATGAGGAGTTCTTGATGCTGGAGAAAGACAGGTTGGCAGCCTGCCTGAAGGATGAGGATCTGCATATAAGAGATGACAGGTCTTGTGTCGAGGCTGTTCTGGCCTGGGTCGGGCATTGTAGAGACAATCGGATCTGCCATCTTAGAATTGTTGGACTTGGTTAAGCTTTCCTCCTCACAGAATCCTACCTCACTGAGAACTTGCTGAAAGAGTCATTGGTGCAAGACTCACTAGAATCCAAAGAGTTCATAGAGAGAACATGTAGAGAGAAACAAGAAATGAAAGGAGGTGAGTCAGAGCAGAGAGTGACCCAGAATGCCCTCAACCTGCAGGAGGTTTTGTTTGTGATGGGTGGCCGCTCGCTGGATGACTcggatgatgaggatgaggatgaagatgaagacaCAGACAGTAGGGTGCACCCCAGAAATTGTGGTTTCTACAACCCAAAGCTTGGGCAGTGGTTTCAGCTACCTGATTTTCCCAACTACAATAAATGGGGTTATTCTGTCGTCTCCTTAAACAACAATGTGTATGTCACAGGAGGATCAAGAGGGTCTCAGTCCAACACCTGGTCCACCACAGAGACTTGGAAGTACATTACTCGTGAGGGCAAGTGGGTCACAGTCGCTCCGATGTTGCGTCCCAGGACTAACCACTCTTCTGCAACCCTTAATGGAGAGATTTATGTAATTGGGGGAACTACAATGGATTTTGTTGAAGTTGAACATTATGACCCCTTCAGTAATTGCTGGACGCTTACGGGCCCAGCGCTAAAGTATGTGACTAACTTTACAGCCACATCATGTGAAGGAAAGCTTTACCTCATTGGTTCTTGCGCTGTTAAATATAATGCCCTGACTATGCAGTGCTACAATCCTGTCATAGATAGCTGGTGTATCATCTGTTCCCCTTTTATTCCTAAGTATCTCTCATCTCCCCGCTCGGTTTCTATGGAGGGAGTCATTTACCTCGTAGCAGATAACACCAAAAAAGTCTATTTGTATAACCCAGAGGGTAATATGTGGGAAAAAATTCAGTTTTTACACACTCTTCATGAAAATGGGGATTTGGTGGTTCTAGGTGGGAAGATGTACGTGACTGGGGGGCACTGGAAGGGCATGGAGGGCGATTACGGTGTGGAAGTAGAAGTGTACAACCGAGCATCCAACACTTGGAAGGTGGAGTGCTTCCTTCCCAGGCTATGGACTTATAGTGGCTACTGCTCCATCTTTCTGGACACTTCCCAGTGGACAGAATTATTCCCTGAAGAGACTTAATATCTGTGTTGTTCCCCAAATCTTGACATAGGCTTTGGTGCAAAGTTGCATTTTGTATAGTAAGTTTTGGTGATATTATAAATTTTTGATAAGGGatttttagattacatttttttttttacataatttacttaGCTGTTGTTTGCTTTCTTGTGTCCAGTGAAAATCTTTGAATTAAACAacctttaattttacatttaagtatatatata

Function

symbol description
klhl30 Orthologous to human KLHL30 (kelch like family member 30).

NR:

description
PREDICTED: LOW QUALITY PROTEIN: kelch-like protein 30

GO: NA

KEGG:

id description
K10466 KLHL30; kelch-like protein 30

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043241038.1 True 2212 mRNA 0.45 9 12464542 12469417

Neighbor

gene id symbol gene type direction distance location
LOC122346457 scly,LOC107552249,LOC107552250,LOC107752645 coding upstream 20301 12439100 ~ 12444241 (+)
kif1aa kif1aa,kif1a,LOC107696745,LOC107694128,LOC107552277,LOC108427666,LOC107593169 coding upstream 311578 12097680 ~ 12152964 (+)
atg4b atg4b,LOC107696761,LOC107552278,LOC107593167,LOC107694120 coding upstream 382514 12075450 ~ 12082028 (+)
boka boka,bok,LOC107733256,LOC107752647,LOC107696759,LOC107694130 coding upstream 389978 12065298 ~ 12074564 (+)
farp2 farp2,LOC107694112,LOC107696757 coding upstream 409532 12011095 ~ 12055010 (+)
LOC122347050 tmem131,LOC107659030,LOC107692350 coding downstream 235228 12704645 ~ 12731083 (+)
LOC122346842 LOC107752644,LOC107696763,LOC107593183,LOC107552264,LOC107753650,LOC107694115 coding downstream 271402 12740819 ~ 12760408 (+)
LOC122346411 klhl30,LOC107753621,LOC107694118,LOC107696751,LOC107752665,LOC107593185 coding downstream 291443 12760860 ~ 12765699 (+)
sned1 sned1,LOC107694110,LOC107753672,LOC107696765,LOC107593186 coding downstream 337083 12806500 ~ 12835911 (+)
ryk ryk,LOC107752642,LOC107696766,LOC107694116,LOC107753628 coding downstream 368812 12838229 ~ 12877785 (+)
G44568 sox14,LOC107679857,LOC107756185,LOC107713406,LOC107713405,LOC107694108,LOC103365676 non-coding upstream 199755 11779030 ~ 12264787 (+)
G44575 hdlbp,LOC107733253,LOC107694132,LOC107552253,LOC107696756,LOC107752661 non-coding upstream 470405 11993558 ~ 11994137 (+)
G44574 hdlbpa,hdlbp,LOC107752661,LOC107694132,LOC107733253,LOC107696756 non-coding upstream 487131 11937101 ~ 11977411 (+)
LOC122347449 NA non-coding upstream 758616 11689692 ~ 11705926 (+)
G44521 NA non-coding upstream 820844 11641081 ~ 11643698 (+)
G44604 NA non-coding downstream 7707 12477124 ~ 12482182 (+)
G44606 LOC107593190,LOC107696746,LOC107552261,LOC107753661,LOC107694109,LOC107752664 non-coding downstream 23536 12492953 ~ 12493642 (+)
G44611 NA non-coding downstream 94675 12564092 ~ 12671665 (+)
G44622 NA non-coding downstream 195403 12664820 ~ 12699577 (+)
G44615 NA non-coding downstream 613963 13083380 ~ 13084230 (+)
scly scly,LOC107552249,LOC107552250,LOC107752645 other upstream 304643 12154268 ~ 12159899 (+)
G44588 NA other upstream 372087 12087399 ~ 12092455 (+)
LOC122346564 LOC107733248,LOC107694106,LOC107576895 other upstream 454003 12002147 ~ 12010539 (+)
G44478 LOC107749977,LOC107730703,LOC107675437,LOC107564626,LOC107698886,LOC107555394 other upstream 1044212 11415273 ~ 11420330 (+)
pik3r6a zgc:158654,LOC107733898,LOC107555378,LOC107704002,LOC107757422,LOC105903457 other upstream 1572082 10882960 ~ 10892460 (+)
LOC122347491 LOC107593172,LOC107593170,LOC107694117,LOC107753639,LOC107552274 other downstream 52356 12521773 ~ 12526957 (+)
crocc2 crocc2,LOC107593190,LOC107753661,LOC107694109,LOC107752664,LOC107552261,LOC107696746 other downstream 296404 12765821 ~ 12805700 (+)
smx5 lsm2,LSM2,smx5 other downstream 611148 13080565 ~ 13082119 (+)
G44645 NA other downstream 639318 13108735 ~ 13109366 (+)
G44887 NA other downstream 924812 13394229 ~ 13409912 (+)

Expression


Co-expression Network