LOC122346427 (her6,LOC107680502,LOC107722674,LOC107711114,LOC107582845,LOC107685314)


Basic Information

Item Value
gene id LOC122346427
gene name her6,LOC107680502,LOC107722674,LOC107711114,LOC107582845,LOC107685314
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056704.1
NCBI id CM032073.1
chromosome length 27473687
location 17553503 ~ 17555239 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043241039.1
CAACACGGCGCTGAGGCAGGCAGTTGCTACGACCGCTGGCAAACGGTGAAATCAGAGACTGTGACATCATTGCCGCACCAGTTGAACTCGGGACACTTCGTGCGGATATCCATTCATATCTGGAACTGTATCTGCGTAAAGCGTTCGCTCCAGTAGAAGATACAAGaggatttctttttaaatacgTCTCAAAGGATACTTCCCAGAGAAGATGCCTGCCGATATCATGGAAAAAAACTCCTCTTCTCCGGTCGCCGCGACTCCGGCGAGCATGAACACTACACCTGATAAACCCAAAACGGCTTCCGAGCATAGAAAGtcTTCTAAACCTATTAtggagaaaagaagaagagcGAGGATCAACGAGAGCTTGGGTCAGCTGAAAACGCTAATCTTGGACGCTCTGAAAAAAGATAGCTCCAGACACTCTAAACTCGAGAAAGCGGACATCCTCGAGATGACAGTGAAACATCTTAGAAACATGCAGCGAGCACAAATGACCGCTGCCCTGAACACGGATCCCACCGTTCTCGGGAAATACAGAGCTGGATTCAGTGAATGCATGAACGAGGTGACCCGGTTCCTGTCCACCTGCGAAGGGGTTAACACCGAGGTCAGGACCCGGCTGCTGGGTCACTTAGCCAGCTGCATGACGCAGATCAACGCCATGAATTATCCGACACAGCACCAGATACCTGCCGGGCCTCCTCACCCATCCTTCAGTCAGCCGATGGTTCAGATCCCCAGCGCGACTCAGCAAGCCAACGTTGTGCCTCGCGGAGTCCCCTGCAAAAGCGGATCTTCCTCCAACTTGACTTCTGACGCAACAAAAGTATACGGAGGTTTCCAGCTCGTGCCGGCAACAGACGGACAATTCGCCTTTTTGATTCCCAACGCTGCCTTTGCTCCAAACGGTCCCGTTATTCCAGTGTACGCCAACAATTCCAACACACCGGTTCCGGTGGCCGTGTCTCCGGGAGCACCGTCCGTCACGTCAGATTCCGTTTGGCGGCCTTGGTAGacaataagaaaaacaaaaaaaactcttacAGACTCTTTAAAGACAAACGAcacttgttttctttgttcagcgttactttttttgttctttttgtatgaaatgtgttttaagagaTGATGCACTATATTTGTATAGATCAAAAGGGAGAGAAGTTCATATTGAAATAAGTTTTGTATTGTTGAATTCCGTTcgatgcattttttatatttgcggTATCTTTTCCACGTTGTGATGCCAAAGATATGTTGAATGCGCTTTCAAGTTTCTTCTTTTTggaagataaataaatgacatattaaaaattaaa

Function

symbol description
her6 Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Acts upstream of or within several processes, including Notch signaling pathway; nervous system development; and somite specification. Predicted to be active in nucleus. Is expressed in several structures, including anterior neural keel; mesoderm; nervous system; neuronal stem cell; and pectoral fin. Orthologous to human HES1 (hes family bHLH transcription factor 1).

NR:

description
transcription factor HES-1

GO:

id name namespace
GO:0021794 thalamus development biological_process
GO:0007219 Notch signaling pathway biological_process
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0001757 somite specification biological_process
GO:0045664 regulation of neuron differentiation biological_process
GO:0005634 nucleus cellular_component
GO:0003677 DNA binding molecular_function
GO:0046983 protein dimerization activity molecular_function

KEGG:

id description
K06054 HES1; hairy and enhancer of split 1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043241039.1 True 1328 mRNA 0.47 5 17553503 17555239

Neighbor

gene id symbol gene type direction distance location
LOC122347243 LOC107551033,LOC107711121,LOC107684213,LOC107732445,LOC107692421,LOC107594625 coding downstream 328593 17217987 ~ 17224910 (-)
brinp3a.1 brinp3a.1,LOC107585174,LOC107711117,LOC107732447,LOC107685317,LOC107564080 coding downstream 627135 16898685 ~ 16926368 (-)
rgs16 rgs16,LOC107684360,LOC107711030,LOC107551031,LOC107732438,LOC107564088,LOC107685341 coding downstream 743706 16807611 ~ 16809797 (-)
rgs5a rgs5a,LOC107684230,LOC107732440,LOC107564083,LOC107685321,LOC108441543 coding downstream 757351 16788677 ~ 16796152 (-)
nos1apa nos1ap,LOC107711121,LOC107594625 coding downstream 789229 16687378 ~ 16764274 (-)
LOC122346430 her6,LOC107680502,LOC107722674,LOC107711114,LOC107582845,LOC107685314 coding upstream 112948 17668187 ~ 17669843 (-)
LOC122347583 LOC107711009 coding upstream 438731 17993970 ~ 17996739 (-)
LOC122346727 cth,LOC107582733,LOC107685307,LOC107673555,LOC107585163,LOC107585162 coding upstream 459999 18015238 ~ 18024042 (-)
LOC122346729 cth,LOC107585162,LOC107673554,LOC107673555,LOC107585163,LOC107582733 coding upstream 472815 18028054 ~ 18040353 (-)
LOC122346728 cth,LOC107585162,LOC107673554,LOC107673555,LOC107585163,LOC107582733 coding upstream 490414 18045653 ~ 18060885 (-)
G45930 LOC107582740,LOC107685313,LOC107722678 non-coding downstream 34898 17514638 ~ 17518605 (-)
G45897 NA non-coding downstream 365709 17187456 ~ 17187794 (-)
G45770 NA non-coding downstream 1230698 16320413 ~ 16322805 (-)
G45753 NA non-coding downstream 1282395 16270902 ~ 16271108 (-)
G45752 NA non-coding downstream 1284111 16268915 ~ 16269392 (-)
G45993 NA non-coding upstream 252382 17807621 ~ 17808115 (-)
G46000 NA non-coding upstream 267297 17822536 ~ 17822735 (-)
LOC122346731 nit2,LOC107585165,LOC107673472,LOC107582734,LOC107685305 non-coding upstream 485125 18040364 ~ 18044630 (-)
LOC122346732 nit2 non-coding upstream 507542 18062781 ~ 18066949 (-)
G46074 NA non-coding upstream 541829 18097068 ~ 18097490 (-)
brinp3a.2 brinp3a.2,LOC107711116,LOC107585215,LOC107732449,LOC107667973,LOC107685312 other downstream 139364 17382327 ~ 17414139 (-)
G45910 NA other downstream 245025 17307815 ~ 17308478 (-)
LOC122347244 nos1apb,LOC107715504,LOC107560777,LOC107701337,LOC107593855 other downstream 307117 17235790 ~ 17246386 (-)
G45895 NA other downstream 366185 17186689 ~ 17187318 (-)
rgs8 rgs8,LOC107711118,LOC107551030,LOC107732448,LOC107564081,LOC108441527 other downstream 723242 16816640 ~ 16830261 (-)
opa1 opa1,LOC107585173,LOC107711112,LOC107582739,LOC107673572,LOC107722677 other upstream 188476 17743715 ~ 17774107 (-)
G46420 LOC107752101,LOC107678225,LOC107581302 other upstream 1089067 18644306 ~ 18645134 (-)
LOC122347235 NA other upstream 1151384 18706623 ~ 18707596 (-)
G46423 sec23b,LOC107753900,LOC107752097,LOC107551934,LOC107659946 other upstream 1158935 18714174 ~ 18717488 (-)
G46478 NA other upstream 1499907 19055146 ~ 19056131 (-)

Expression


Co-expression Network